Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008695

Physical Location & Seq

Genomic Coordinates Reverse (-)

30052316 .. 30057468

Gene Structure 5153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG137000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTGTCTCATGAGTATGACAGTTATTGGCTAGCTTGTCAAGATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAGTCTTGGGAGCAAGCACTTCTTCAGAAATGGATGATGAATTGACGAAGATGCTTCAGGCCACAGCCCAAGCAAAATTAGTAGTGGTATTGGCATCTCAAAACAGTTGGAAAATAAGTACAAAGCTGCACAACAGTCCTCTCAGGTCTGGCAATGTCGATGGAATCAAGGTCCAAAAAGCACAACTAGCTGTTCAGAGAGGAGAGGAGAATCTTTCACATGAAGCTCTGAAGAGGCGTAAATATTTTGAAATTGCTAATTCTTTGAAAACTCAACTTGATCAACAAAATGGTGTTGTTGATAATATTGTGCTTACTTTCGCATCATGTGATTCTTGGCTACTACAACCTCTTCGATTCGATTCAGTCATATCCTACTTTTCTGAAGAAGAAAAAAAACACCATAAAGTTTGTAAGATGAACTTCCAGAAGGTGAGTAGCCTCTTCATCGTCTTGGTCATAACAGTAGCAATCTTGGGTCATTCTCAGGTTCAAGCAATTAGACTGCTACCCGAGGACTTTGCCGGTGCTAACCATTTGGAGACATTCTCCTCCCCATCATCGCTGGCCTACGAGAAGGCCAAATACACCATGGAATGTTGGCTTCAACGACTGGCTTCAGGACCAAGCCCCAAAGGACCTGGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.94

Weight (kDa)

6.45

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28460
prunus_persica	Prupe.1G203300_v2.0.a1 Prupe.1G203400_v2.0.a1
pyrus_communis	pycom04g04230 pycom04g04240
rosa_laevigata	RLG00000008779 RLG00000008780
rosa_multiflora	Rmu_sc0007014.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121640 Rroxscaffold_5G00351020 Rroxscaffold_5G00351030
rosa_rugosa	Rorug02G0237900 Rorug04G0067600
rosa_samantha	Rh2AG297300 Rh2BG306100 Rh2CG284400 Rh2DG321100 Rh4AG137000 Rh4BG134600 Rh4CG145200 Rh4DG132100
rosa_wichuraiana	Rw0G006880 Rw4G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	5 cut(s)	84, 116, 326, 480, 678
AfaI	GTAC	1 cut(s)	196
AgsI	TTSAA	5 cut(s)	65, 326, 343, 569, 683
AjnI	CCWGG	1 cut(s)	715
AluBI	AGCT	4 cut(s)	35, 202, 266, 302
AluI	AGCT	4 cut(s)	35, 202, 266, 302
Alw26I	GTCTC	2 cut(s)	12, 611
AlwI	GGATC	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	587
AoxI	GGCC	3 cut(s)	135, 642, 654
ApeKI	GCWGC	1 cut(s)	202
AspS9I	GGNCC	3 cut(s)	247, 698, 713
AsuHPI	GGTGA	1 cut(s)	520
AsuNHI	GCTAGC	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	3 cut(s)	247, 698, 713
BarI	GAAGNNNNNNTAC	2 cut(s)	644, 676
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	2 cut(s)	230, 640
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BciT130I	CCWGG	1 cut(s)	717
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	12, 611
BfaI	CTAG	3 cut(s)	32, 263, 724
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	717
Bme18I	GGWCC	3 cut(s)	247, 698, 713
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	3 cut(s)	247, 698, 713
BmrFI	CCNGG	1 cut(s)	717
BmsI	GCATC	4 cut(s)	34, 117, 179, 407
BmtI	GCTAGC	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BsaJI	CCNNGG	2 cut(s)	588, 666
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	693
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	2 cut(s)	588, 666
BseGI	GGATG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	3 cut(s)	63, 232, 575
BseNI	ACTGG	1 cut(s)	693
BseRI	GAGGAG	3 cut(s)	291, 296, 616
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	137, 644, 656
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	1 cut(s)	600
BsmAI	GTCTC	2 cut(s)	12, 611
BsnI	GGCC	3 cut(s)	137, 644, 656
BsoBI	CYCGRG	1 cut(s)	587
Bsp143I	GATC	2 cut(s)	67, 355
Bsp19I	CCATGG	1 cut(s)	666
BspANI	GGCC	3 cut(s)	137, 644, 656
BspCNI	CTCAG	3 cut(s)	64, 231, 574
BspHI	TCATGA	1 cut(s)	10
BspOI	GCTAGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	693
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	2 cut(s)	588, 666
BssMI	GATC	2 cut(s)	67, 355
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	4 cut(s)	23, 182, 212, 541
Bst6I	CTCTTC	3 cut(s)	302, 432, 524
BstC8I	GCNNGC	3 cut(s)	33, 91, 642
BstDEI	CTNAG	3 cut(s)	72, 218, 561
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	70, 358
BstMAI	GTCTC	2 cut(s)	12, 611
BstMBI	GATC	2 cut(s)	67, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	717
BstSCI	CCNGG	1 cut(s)	715
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	137, 644, 656
BtgI	CCRYGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	621
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	3 cut(s)	33, 91, 642
CciI	TCATGA	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	3 cut(s)	247, 698, 713
CsiI	ACCWGGT	1 cut(s)	715
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	4 cut(s)	11, 296, 402, 667
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	3 cut(s)	72, 218, 561
DpnI	GATC	2 cut(s)	69, 357
DpnII	GATC	2 cut(s)	67, 355
Eam1104I	CTCTTC	3 cut(s)	302, 432, 524
EarI	CTCTTC	3 cut(s)	302, 432, 524
Eco130I	CCWWGG	1 cut(s)	666
Eco47I	GGWCC	3 cut(s)	247, 698, 713
Eco57I	CTGAAG	5 cut(s)	84, 116, 326, 480, 678
Eco88I	CYCGRG	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	715
EcoT14I	CCWWGG	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	4 cut(s)	14, 299, 405, 670
FaiI	YATR	9 cut(s)	12, 18, 53, 297, 403, 446, 480, 536, 668
FalI	AAGNNNNNCTT	4 cut(s)	82, 114, 482, 514
FatI	CATG	4 cut(s)	10, 295, 401, 666
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	3 cut(s)	32, 263, 724
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	137, 644, 656
HapII	CCGG	1 cut(s)	600
Hin1II	CATG	4 cut(s)	14, 299, 405, 670
HinfI	GANTC	5 cut(s)	240, 286, 407, 432, 437
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	1 cut(s)	520
Hpy188I	TCNGA	4 cut(s)	103, 273, 306, 460
Hpy188III	TCNNGA	5 cut(s)	11, 41, 71, 502, 696
HpyAV	CCTTC	2 cut(s)	499, 646
HpyCH4III	ACNGT	4 cut(s)	23, 182, 212, 541
HpyCH4V	TGCA	2 cut(s)	47, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	3 cut(s)	72, 218, 561
Hsp92II	CATG	4 cut(s)	14, 299, 405, 670
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	67, 355
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	4 cut(s)	34, 117, 179, 407
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	3 cut(s)	32, 263, 724
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	2 cut(s)	69, 357
MboI	GATC	2 cut(s)	67, 355
MboII	GAAGA	8 cut(s)	77, 90, 136, 319, 419, 473, 476, 511
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	5 cut(s)	116, 152, 327, 334, 573
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	8 cut(s)	225, 269, 274, 303, 435, 527, 583, 637
MslI	CAYNNNNRTG	1 cut(s)	15
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	717
MwoI	GCNNNNNNNGC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	2 cut(s)	67, 355
NheI	GCTAGC	1 cut(s)	31
NlaIII	CATG	4 cut(s)	14, 299, 405, 670
NmuCI	GTSAC	1 cut(s)	719
PagI	TCATGA	1 cut(s)	10
PfeI	GAWTC	5 cut(s)	240, 286, 407, 432, 437
PflFI	GACNNNGTC	1 cut(s)	717
PkrI	GCNGC	1 cut(s)	204
PpuMI	RGGWCCY	1 cut(s)	713
Psp5II	RGGWCCY	1 cut(s)	713
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspPI	GGNCC	3 cut(s)	247, 698, 713
PspPPI	RGGWCCY	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	717
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	15
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	67, 355
Sau96I	GGNCC	3 cut(s)	247, 698, 713
ScrFI	CCNGG	1 cut(s)	717
SexAI	ACCWGGT	1 cut(s)	715
SfaNI	GCATC	4 cut(s)	34, 117, 179, 407
SinI	GGWCC	3 cut(s)	247, 698, 713
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	5 cut(s)	116, 152, 327, 334, 573
SspI	AATATT	2 cut(s)	320, 382
SspMI	CTAG	3 cut(s)	32, 263, 724
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	4 cut(s)	23, 182, 212, 541
TaqI	TCGA	3 cut(s)	234, 430, 435
TasI	AATT	5 cut(s)	116, 152, 327, 334, 573
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	5 cut(s)	240, 286, 407, 432, 437
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	4 cut(s)	129, 312, 509, 511
Tth111I	GACNNNGTC	1 cut(s)	717
VpaK11BI	GGWCC	3 cut(s)	247, 698, 713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XspI	CTAG	3 cut(s)	32, 263, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.