Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008695

Physical Location & Seq

Genomic Coordinates Forward (+)

26405929 .. 26412975

Gene Structure 7047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCCCCAAATAGAACATAAAAGAAAGATTCAGACGACAAGAAAAGAAGACGTCGGATGTCACGGCCTCACGACTCACGACCTCCTTCGTGAGAGGGTTCTCTCTGTTTTTCCTTTGAAGGTATTGGCATCTCAAAACAGTTGGAAAATAAGTACAAAGCTGCACAACAGTCCTCTCAGGTCTGGCAATGTCAACGGAATCAAGGTCCAAAAAGCACAACTAGCTGTTCAGAGAGGAGAGGAGAATCTTTCACATGAAGCTCTGAAGAGGCGTAAATATTTTGAAATTACTAATTCTCTGAAAACTCAACTTGATCAACAAAATGGTGTTGTTGATAATATTGTGCTTACTTTCGCATCATGTGATTCTTGGCTAGAGAACAAGATACAAGAGGCAAGGTCAAAAGAAGATACACTCAAAGCATGTGCCCAGTCTGCAAGGACTGCTACTGAAGTGAGTGAGATGGTGGGGAATGTTGATATAGGTCATGCCCTTTCTGCTTTTGAAAAGATAGAAGAGAAAGGTAACATCCAGGTGGCTTCATACTTCAAAACAATTAACAATTTCAGACTTTTCTTGCTCGGTCAATTCAGAAACAAGAACTGGGTCAATGGCCTGGTCATATCCTACTTTTCTGAAGAAGAAAAAAAACACCATAAAGTTTGTAAGATGAACTTCCAGAAGGTTCAAGCAATTAGACTGCTACCCGAGGACTTTGCCGGTGCTAACCATTTGGAGACATACTCCTCCCCATCATCGCTGGCCTACGAGAAGGCCAAATACACCATGGAATGTTGGCTTCAACGACTGGCTTCAGGACCAAGCCCCAAAGGACCTGGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

281

Amino Acids

31.87

Weight (kDa)

9.33

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	70 - 174	3.5e-14	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28460
prunus_persica	Prupe.1G203300_v2.0.a1 Prupe.1G203400_v2.0.a1
pyrus_communis	pycom04g04230 pycom04g04240
rosa_laevigata	RLG00000008779 RLG00000008780
rosa_multiflora	Rmu_sc0007014.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121640 Rroxscaffold_5G00351020 Rroxscaffold_5G00351030
rosa_rugosa	Rorug02G0237900 Rorug04G0067600
rosa_samantha	Rh2AG297300 Rh2BG306100 Rh2CG284400 Rh2DG321100 Rh4AG137000 Rh4BG134600 Rh4CG145200 Rh4DG132100
rosa_wichuraiana	Rw0G006880 Rw4G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AcuI	CTGAAG	4 cut(s)	284, 471, 657, 798
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	6 cut(s)	118, 284, 506, 550, 689, 803
AjnI	CCWGG	3 cut(s)	531, 615, 835
AluBI	AGCT	3 cut(s)	160, 224, 260
AluI	AGCT	3 cut(s)	160, 224, 260
Alw26I	GTCTC	1 cut(s)	731
Ama87I	CYCGRG	1 cut(s)	707
AoxI	GGCC	4 cut(s)	64, 613, 762, 774
ApeKI	GCWGC	1 cut(s)	160
AspS9I	GGNCC	3 cut(s)	205, 818, 833
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	3 cut(s)	205, 818, 833
BaeGI	GKGCMC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	764, 796
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	2 cut(s)	457, 760
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	3 cut(s)	533, 617, 837
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	731
BfaI	CTAG	3 cut(s)	221, 374, 844
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	3 cut(s)	533, 617, 837
Bme18I	GGWCC	3 cut(s)	205, 818, 833
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	3 cut(s)	205, 818, 833
BmrFI	CCNGG	3 cut(s)	533, 617, 837
BmrI	ACTGGG	2 cut(s)	424, 613
BmsI	GCATC	2 cut(s)	137, 365
BmuI	ACTGGG	2 cut(s)	424, 613
BpiI	GAAGAC	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	708, 786
Bse118I	RCCGGY	1 cut(s)	719
Bse1I	ACTGG	3 cut(s)	430, 608, 813
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	3 cut(s)	533, 617, 837
BseDI	CCNNGG	2 cut(s)	708, 786
BseGI	GGATG	2 cut(s)	62, 528
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	3 cut(s)	430, 608, 813
BseRI	GAGGAG	3 cut(s)	249, 254, 736
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	4 cut(s)	66, 615, 764, 776
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	1 cut(s)	720
BsmAI	GTCTC	1 cut(s)	731
BsnI	GGCC	4 cut(s)	66, 615, 764, 776
BsoBI	CYCGRG	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	1 cut(s)	313
Bsp19I	CCATGG	1 cut(s)	786
BspANI	GGCC	4 cut(s)	66, 615, 764, 776
BspCNI	CTCAG	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	719
BsrI	ACTGG	3 cut(s)	430, 608, 813
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	2 cut(s)	708, 786
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	3 cut(s)	533, 617, 837
Bst4CI	ACNGT	2 cut(s)	140, 170
Bst6I	CTCTTC	2 cut(s)	260, 510
BstACI	GRCGYC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	2 cut(s)	62, 528
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	731
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 434, 443, 497
BstNI	CCWGG	3 cut(s)	533, 617, 837
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	3 cut(s)	531, 615, 835
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	4 cut(s)	66, 615, 764, 776
BtgI	CCRYGG	1 cut(s)	786
BtgZI	GCGATG	1 cut(s)	741
BtsCI	GGATG	2 cut(s)	62, 528
Cac8I	GCNNGC	1 cut(s)	762
Cfr10I	RCCGGY	1 cut(s)	719
Cfr13I	GGNCC	3 cut(s)	205, 818, 833
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	5 cut(s)	254, 360, 423, 488, 787
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	260, 510
EarI	CTCTTC	2 cut(s)	260, 510
Eco130I	CCWWGG	1 cut(s)	786
Eco47I	GGWCC	3 cut(s)	205, 818, 833
Eco57I	CTGAAG	4 cut(s)	284, 471, 657, 798
Eco88I	CYCGRG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	833
EcoRII	CCWGG	3 cut(s)	531, 615, 835
EcoT14I	CCWWGG	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	5 cut(s)	257, 363, 426, 491, 790
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FatI	CATG	5 cut(s)	253, 359, 422, 487, 786
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	2 cut(s)	69, 515
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	3 cut(s)	221, 374, 844
GluI	GCNGC	1 cut(s)	161
HaeIII	GGCC	4 cut(s)	66, 615, 764, 776
HapII	CCGG	1 cut(s)	720
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	5 cut(s)	257, 363, 426, 491, 790
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	5 cut(s)	28, 73, 198, 244, 365
HpaII	CCGG	1 cut(s)	720
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	8 cut(s)	33, 56, 231, 264, 300, 569, 593, 637
Hpy188III	TCNNGA	5 cut(s)	70, 77, 89, 679, 816
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	95, 112, 676, 766
HpyCH4III	ACNGT	2 cut(s)	140, 170
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	163, 437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 434, 443, 497
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	5 cut(s)	257, 363, 426, 491, 790
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	313
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	2 cut(s)	137, 365
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	3 cut(s)	221, 374, 844
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	3 cut(s)	59, 524, 839
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	6 cut(s)	59, 277, 419, 527, 650, 653
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	6 cut(s)	285, 292, 555, 562, 587, 693
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	2 cut(s)	34, 122
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	533
MspI	CCGG	1 cut(s)	720
MspR9I	CCNGG	3 cut(s)	533, 617, 837
MvaI	CCWGG	3 cut(s)	533, 617, 837
MwoI	GCNNNNNNNGC	4 cut(s)	221, 434, 443, 497
NcoI	CCATGG	1 cut(s)	786
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	5 cut(s)	257, 363, 426, 491, 790
NmuCI	GTSAC	2 cut(s)	59, 839
NspI	RCATGY	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	28, 198, 244, 365
PflFI	GACNNNGTC	1 cut(s)	837
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	833
Psp5II	RGGWCCY	1 cut(s)	833
Psp6I	CCWGG	3 cut(s)	531, 615, 835
PspGI	CCWGG	3 cut(s)	531, 615, 835
PspPI	GGNCC	3 cut(s)	205, 818, 833
PspPPI	RGGWCCY	1 cut(s)	833
PsyI	GACNNNGTC	1 cut(s)	837
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	3 cut(s)	205, 818, 833
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	3 cut(s)	533, 617, 837
SduI	GDGCHC	1 cut(s)	430
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	2 cut(s)	137, 365
SinI	GGWCC	3 cut(s)	205, 818, 833
SmiMI	CAYNNNNRTG	1 cut(s)	533
Sse9I	AATT	6 cut(s)	285, 292, 555, 562, 587, 693
SspI	AATATT	2 cut(s)	278, 340
SspMI	CTAG	3 cut(s)	221, 374, 844
StyD4I	CCNGG	3 cut(s)	531, 615, 835
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	2 cut(s)	140, 170
TaiI	ACGT	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	6 cut(s)	285, 292, 555, 562, 587, 693
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	4 cut(s)	28, 198, 244, 365
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TseFI	GTSAC	2 cut(s)	59, 839
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	2 cut(s)	59, 839
TspDTI	ATGAA	3 cut(s)	270, 531, 686
TspGWI	ACGGA	1 cut(s)	210
Tth111I	GACNNNGTC	1 cut(s)	837
VpaK11BI	GGWCC	3 cut(s)	205, 818, 833
XceI	RCATGY	1 cut(s)	426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	784
XspI	CTAG	3 cut(s)	221, 374, 844
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.