Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008695

Physical Location & Seq

Genomic Coordinates Reverse (-)

28974593 .. 29023696

Gene Structure 49104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTGTCTCATGAGTATGACAGTTATTGGCTAGCTTGTCAAGATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAGTCTTGGGAGCAAGCACTTCTTCAGAAATGGATGATGAATTGACGAAGATGCTTCAGGCCACAGCCCAAGCAAAATTAGTAGTGGTATTGGCATCTCAAAACAGTTGGAAAATAAGTACAAAGCTGCACAACAGTCCTCTCAGGTCTGGCAATGTCGATGGAATCAAGGTCCAAAAAGCACAACTAGCTGTTCAGAGAGGAGAGGAGAATCTTTCACATGAAGCTCTGAAGAGGCGTAAATATTTTGTGCTTTTAGCTAGAGAAGAAGATACACTCAAAACATGTGCCCAGTCTGCAAGGACTGCTACTGAAGTGAGTGAGATGGTGGGGAATGTTGATATAGGTCATGCCCTTTCTGCTTTTGAAAAGATAGAAGAGAAAGGTCACATCCAGACGAGCTATCGGATCTTCCACATTAAAAGCACAGACATGATTAAGTATCTGGAAAAATTTAATTATTATTATTTTTCATGTTATATATGGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

188

Amino Acids

21.42

Weight (kDa)

6.08

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28460
prunus_persica	Prupe.1G203300_v2.0.a1 Prupe.1G203400_v2.0.a1
pyrus_communis	pycom04g04230 pycom04g04240
rosa_laevigata	RLG00000008779 RLG00000008780
rosa_multiflora	Rmu_sc0007014.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121640 Rroxscaffold_5G00351020 Rroxscaffold_5G00351030
rosa_rugosa	Rorug02G0237900 Rorug04G0067600
rosa_samantha	Rh2AG297300 Rh2BG306100 Rh2CG284400 Rh2DG321100 Rh4AG137000 Rh4BG134600 Rh4CG145200 Rh4DG132100
rosa_wichuraiana	Rw0G006880 Rw4G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	62, 491
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	4 cut(s)	84, 116, 326, 408
AfaI	GTAC	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	65, 443
AluBI	AGCT	6 cut(s)	35, 202, 266, 302, 335, 477
AluI	AGCT	6 cut(s)	35, 202, 266, 302, 335, 477
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	62, 491
AoxI	GGCC	2 cut(s)	135, 560
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	247, 561
AsuNHI	GCTAGC	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	2 cut(s)	230, 394
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	4 cut(s)	32, 263, 336, 565
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	247, 561
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	3 cut(s)	34, 117, 179
BmtI	GCTAGC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	235
BseGI	GGATG	2 cut(s)	115, 465
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	63, 232
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	2 cut(s)	291, 296
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	137, 562
BsmAI	GTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	137, 562
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	67, 483
BspANI	GGCC	2 cut(s)	137, 562
BspCNI	CTCAG	2 cut(s)	64, 231
BspHI	TCATGA	1 cut(s)	10
BspOI	GCTAGC	1 cut(s)	35
BspPI	GGATC	2 cut(s)	62, 491
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	367
BssMI	GATC	2 cut(s)	67, 483
Bst4CI	ACNGT	3 cut(s)	23, 182, 212
Bst6I	CTCTTC	2 cut(s)	302, 447
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	33, 91
BstDEI	CTNAG	2 cut(s)	72, 218
BstF5I	GGATG	2 cut(s)	115, 465
BstKTI	GATC	2 cut(s)	70, 486
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	67, 483
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 371, 380, 434
BstNSI	RCATGY	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	67, 483
BstYI	RGATCY	2 cut(s)	67, 483
BsuRI	GGCC	2 cut(s)	137, 562
BtsCI	GGATG	2 cut(s)	115, 465
Cac8I	GCNNGC	2 cut(s)	33, 91
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	247, 561
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	6 cut(s)	11, 296, 360, 425, 508, 549
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	2 cut(s)	72, 218
DpnI	GATC	2 cut(s)	69, 485
DpnII	GATC	2 cut(s)	67, 483
Eam1104I	CTCTTC	2 cut(s)	302, 447
EarI	CTCTTC	2 cut(s)	302, 447
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	4 cut(s)	84, 116, 326, 408
FaeI	CATG	6 cut(s)	14, 299, 363, 428, 511, 552
FalI	AAGNNNNNCTT	2 cut(s)	82, 114
FatI	CATG	6 cut(s)	10, 295, 359, 424, 507, 548
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	122, 452
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	4 cut(s)	32, 263, 336, 565
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	137, 562
Hin1II	CATG	6 cut(s)	14, 299, 363, 428, 511, 552
HinfI	GANTC	2 cut(s)	240, 286
Hpy188I	TCNGA	4 cut(s)	103, 273, 306, 483
Hpy188III	TCNNGA	5 cut(s)	11, 41, 71, 469, 521
HpyCH4III	ACNGT	3 cut(s)	23, 182, 212
HpyCH4V	TGCA	3 cut(s)	47, 205, 374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 371, 380, 434
HpyF3I	CTNAG	2 cut(s)	72, 218
Hsp92II	CATG	6 cut(s)	14, 299, 363, 428, 511, 552
Kzo9I	GATC	2 cut(s)	67, 483
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	7 cut(s)	84, 119, 205, 210, 380, 482, 506
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	3 cut(s)	34, 117, 179
MaeI	CTAG	4 cut(s)	32, 263, 336, 565
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	2 cut(s)	69, 485
MboI	GATC	2 cut(s)	67, 483
MboII	GAAGA	8 cut(s)	77, 90, 136, 319, 353, 356, 464, 478
MflI	RGATCY	2 cut(s)	67, 483
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	4 cut(s)	116, 152, 527, 532
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	4 cut(s)	225, 269, 274, 303
MseI	TTAA	3 cut(s)	495, 513, 531
MslI	CAYNNNNRTG	2 cut(s)	15, 506
MwoI	GCNNNNNNNGC	4 cut(s)	263, 371, 380, 434
NdeII	GATC	2 cut(s)	67, 483
NheI	GCTAGC	1 cut(s)	31
NlaIII	CATG	6 cut(s)	14, 299, 363, 428, 511, 552
NmuCI	GTSAC	1 cut(s)	461
NspI	RCATGY	1 cut(s)	363
PagI	TCATGA	1 cut(s)	10
PciI	ACATGT	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	240, 286
PkrI	GCNGC	1 cut(s)	204
PscI	ACATGT	1 cut(s)	359
PspPI	GGNCC	2 cut(s)	247, 561
PsuI	RGATCY	2 cut(s)	67, 483
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	2 cut(s)	15, 506
SaqAI	TTAA	3 cut(s)	495, 513, 531
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	67, 483
Sau96I	GGNCC	2 cut(s)	247, 561
SduI	GDGCHC	1 cut(s)	367
SfaNI	GCATC	3 cut(s)	34, 117, 179
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	2 cut(s)	15, 506
Sse9I	AATT	4 cut(s)	116, 152, 527, 532
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	4 cut(s)	32, 263, 336, 565
TaaI	ACNGT	3 cut(s)	23, 182, 212
TaqI	TCGA	1 cut(s)	234
TasI	AATT	4 cut(s)	116, 152, 527, 532
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	240, 286
Tru1I	TTAA	3 cut(s)	495, 513, 531
Tru9I	TTAA	3 cut(s)	495, 513, 531
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	3 cut(s)	129, 312, 537
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	1 cut(s)	363
XspI	CTAG	4 cut(s)	32, 263, 336, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.