pycom04g13190

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0005403
Physical Location & Seq
Reverse (-)
16182410 .. 16185054
2645 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
ATGAGTGCCAAGGCCCAAACTACAAACAGCTTCTCTTGCAGACTACGACGCCGTTTCAACCCCCCACGCATTTGCTTTATCCGGTCTCAGCCTTCACATCCATCCACTGGTCGTCGTCCCGGAGCATCTTTCTCCATGGCAGAGTCAATTCTCGAGCAGCTAAGGAATGGAACTGCTCGGTTCGAGCTCGCCGCCTCCCCCGTCCTTTCAATTTCAACTTCCAATTCTCCGGTGAACCCAACGGCGTCGTTCGGGGACCACAGCCACCGGTTCTTCGCTAGAATTGGACCGCCACTAGGCAGAGGATCGTCGGCGATGAAGAAAGTTGAACGTTTTTCGGTTCAGAAAGTTACCGGCGACGGACGCTGTTTATTTCGTGCTCTGGTGAAAGGAATGGCTTTGAATAAAGGGGTTCCTCTTAGCCCAAGGCAAGAGAAAGATGATGCAGACGAACTACGGATGGCTGTGAAAGAGGTTATATGCGAAGATGAGGAAGAGCGTGTTAAGTATGAACCTGCTCTGGTTGCAATCACTGTCGATGAGTCCTTAAAGCGTTACTGCCAGCGCATCAATAGACCAGATTTCTGGGGAGGAGAGTCCGAGCTGCTGGTTCTGTCAAAGTTATGTGGGCAGCCAATCACTGTTTACATACCGGAGCATGAGCATACAAATGGTGGACGGGGTTCTGGTTTCATTCCGATTGCAGAATATGGAAGCGAGTTTACTAAAGGTTCTAGAAACAAAAAGCCCAGAAAGGTTGTGAGACTCCTATACAGTGGCAGGAACCATTATGATCTGCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

269

Amino Acids

29.9

Weight (kDa)

9.76

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 119 - 264 1.1e-11 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 523
AccB7I CCANNNNNTGG 1 cut(s) 107
AciI CCGC 2 cut(s) 192, 290
AclI AACGTT 1 cut(s) 331
AclWI GGATC 1 cut(s) 313
AcyI GRCGYC 2 cut(s) 49, 245
AfiI CCNNNNNNNGG 2 cut(s) 107, 296
AgeI ACCGGT 1 cut(s) 267
AgsI TTSAA 5 cut(s) 58, 210, 216, 329, 403
AluBI AGCT 4 cut(s) 30, 160, 187, 604
AluI AGCT 4 cut(s) 30, 160, 187, 604
Alw21I GWGCWC 2 cut(s) 189, 382
Alw26I GTCTC 2 cut(s) 90, 757
AlwI GGATC 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 3 cut(s) 157, 604, 631
AsiGI ACCGGT 1 cut(s) 267
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 3 cut(s) 13, 256, 287
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 244, 397
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 2 cut(s) 256, 287
BanII GRGCYC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 706, 738
Bbv12I GWGCWC 2 cut(s) 189, 382
BbvI GCAGC 3 cut(s) 169, 591, 643
BccI CCATC 2 cut(s) 109, 454
BceAI ACGGC 2 cut(s) 36, 258
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 90, 757
BfaI CTAG 3 cut(s) 279, 296, 735
BfuAI ACCTGC 1 cut(s) 523
BisI GCNGC 4 cut(s) 158, 192, 605, 632
BlsI GCNGC 4 cut(s) 159, 193, 606, 633
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 2 cut(s) 256, 287
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 3 cut(s) 13, 256, 287
BmiI GGNNCC 3 cut(s) 257, 414, 785
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 3 cut(s) 134, 433, 576
Bpu10I CCTNAGC 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 120
BsaHI GRCGYC 2 cut(s) 49, 245
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 9, 135, 425
BsaWI WCCGGW 4 cut(s) 81, 229, 267, 652
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 296
Bse118I RCCGGY 2 cut(s) 267, 353
Bse1I ACTGG 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 9, 135, 425
BseGI GGATG 3 cut(s) 97, 101, 465
BseLI CCNNNNNNNGG 2 cut(s) 107, 296
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 606
BseXI GCAGC 3 cut(s) 169, 591, 643
BshFI GGCC 1 cut(s) 14
BshTI ACCGGT 1 cut(s) 267
BsiHKAI GWGCWC 2 cut(s) 189, 382
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 6 cut(s) 82, 120, 230, 268, 354, 653
BslFI GGGAC 2 cut(s) 102, 269
BslI CCNNNNNNNGG 2 cut(s) 107, 296
BsmAI GTCTC 2 cut(s) 90, 757
BsmFI GGGAC 2 cut(s) 102, 269
BsnI GGCC 1 cut(s) 14
Bso31I GGTCTC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 189, 382
Bsp143I GATC 2 cut(s) 305, 793
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 2 cut(s) 192, 290
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 3 cut(s) 257, 414, 785
BspMI ACCTGC 1 cut(s) 523
BspPI GGATC 1 cut(s) 313
BspQI GCTCTTC 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 90
BsrFI RCCGGY 2 cut(s) 267, 353
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 2 cut(s) 267, 353
BssECI CCNNGG 3 cut(s) 9, 135, 425
BssMI GATC 2 cut(s) 305, 793
BssNI GRCGYC 2 cut(s) 49, 245
BssT1I CCWWGG 3 cut(s) 9, 135, 425
Bst4CI ACNGT 3 cut(s) 535, 643, 776
Bst6I CTCTTC 1 cut(s) 489
BstACI GRCGYC 2 cut(s) 49, 245
BstC8I GCNNGC 2 cut(s) 189, 563
BstDEI CTNAG 3 cut(s) 87, 161, 419
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 3 cut(s) 97, 101, 465
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 2 cut(s) 308, 796
BstMAI GTCTC 2 cut(s) 90, 757
BstMBI GATC 2 cut(s) 305, 793
BstMWI GCNNNNNNNGC 3 cut(s) 36, 363, 524
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 169, 591, 643
BstXI CCANNNNNNTGG 1 cut(s) 585
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 329
BtsCI GGATG 3 cut(s) 97, 101, 465
BtsIMutI CAGTG 4 cut(s) 105, 531, 639, 781
BveI ACCTGC 1 cut(s) 523
Cac8I GCNNGC 2 cut(s) 189, 563
CfoI GCGC 1 cut(s) 567
Cfr10I RCCGGY 2 cut(s) 267, 353
Cfr13I GGNCC 3 cut(s) 13, 256, 287
CseI GACGC 3 cut(s) 57, 234, 372
CspAI ACCGGT 1 cut(s) 267
CviAII CATG 2 cut(s) 136, 659
DdeI CTNAG 3 cut(s) 87, 161, 419
DpnI GATC 2 cut(s) 307, 795
DpnII GATC 2 cut(s) 305, 793
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 3 cut(s) 9, 135, 425
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 256, 287
Eco53kI GAGCTC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 187
EcoT14I CCWWGG 3 cut(s) 9, 135, 425
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 3 cut(s) 9, 135, 425
FaeI CATG 2 cut(s) 139, 662
FaqI GGGAC 2 cut(s) 102, 269
FatI CATG 2 cut(s) 135, 658
Fnu4HI GCNGC 4 cut(s) 158, 192, 605, 632
FokI GGATG 3 cut(s) 84, 88, 472
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 4 cut(s) 158, 192, 605, 632
FspBI CTAG 3 cut(s) 279, 296, 735
GlaI GCGC 1 cut(s) 566
GluI GCNGC 4 cut(s) 158, 192, 605, 632
HaeIII GGCC 1 cut(s) 14
HapII CCGG 6 cut(s) 82, 120, 230, 268, 354, 653
HgaI GACGC 3 cut(s) 57, 234, 372
HhaI GCGC 1 cut(s) 567
Hin1I GRCGYC 2 cut(s) 49, 245
Hin1II CATG 2 cut(s) 139, 662
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HinfI GANTC 4 cut(s) 143, 542, 596, 765
HpaII CCGG 6 cut(s) 82, 120, 230, 268, 354, 653
HphI GGTGA 2 cut(s) 244, 397
Hpy166II GTNNAC 4 cut(s) 235, 646, 677, 723
Hpy188I TCNGA 3 cut(s) 345, 601, 699
Hpy188III TCNNGA 2 cut(s) 152, 735
Hpy8I GTNNAC 4 cut(s) 235, 646, 677, 723
Hpy99I CGWCG 5 cut(s) 51, 117, 250, 313, 362
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 3 cut(s) 535, 643, 776
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 4 cut(s) 39, 446, 527, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 363, 524
HpyF3I CTNAG 3 cut(s) 87, 161, 419
HpySE526I ACGT 1 cut(s) 331
Hsp92I GRCGYC 2 cut(s) 49, 245
Hsp92II CATG 2 cut(s) 139, 662
HspAI GCGC 1 cut(s) 565
Kzo9I GATC 2 cut(s) 305, 793
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 2 cut(s) 122, 655
Lsp1109I GCAGC 3 cut(s) 169, 591, 643
LweI GCATC 3 cut(s) 134, 433, 576
MaeI CTAG 3 cut(s) 279, 296, 735
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 2 cut(s) 349, 554
MalI GATC 2 cut(s) 307, 795
MboI GATC 2 cut(s) 305, 793
MboII GAAGA 4 cut(s) 265, 331, 497, 506
MhlI GDGCHC 2 cut(s) 189, 382
MluCI AATT 4 cut(s) 147, 210, 223, 282
MlyI GAGTC 4 cut(s) 152, 551, 605, 759
MnlI CCTC 6 cut(s) 205, 296, 426, 466, 484, 584
MseI TTAA 2 cut(s) 504, 548
MslI CAYNNNNRTG 1 cut(s) 669
MspI CCGG 6 cut(s) 82, 120, 230, 268, 354, 653
MspR9I CCNGG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 36, 363, 524
NciI CCSGG 1 cut(s) 120
NcoI CCATGG 1 cut(s) 135
NdeII GATC 2 cut(s) 305, 793
NlaIII CATG 2 cut(s) 139, 662
NlaIV GGNNCC 3 cut(s) 257, 414, 785
PaeR7I CTCGAG 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 489
PflMI CCANNNNNTGG 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 267
PkrI GCNGC 4 cut(s) 159, 193, 606, 633
PleI GAGTC 4 cut(s) 151, 550, 604, 759
PpsI GAGTC 4 cut(s) 151, 550, 604, 759
Psp124BI GAGCTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 331
PspN4I GGNNCC 3 cut(s) 257, 414, 785
PspPI GGNCC 3 cut(s) 13, 256, 287
RseI CAYNNNNRTG 1 cut(s) 669
SacI GAGCTC 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 2 cut(s) 504, 548
SatI GCNGC 4 cut(s) 158, 192, 605, 632
Sau3AI GATC 2 cut(s) 305, 793
Sau96I GGNCC 3 cut(s) 13, 256, 287
SchI GAGTC 4 cut(s) 152, 551, 605, 759
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 2 cut(s) 189, 382
SetI ASST 9 cut(s) 32, 162, 189, 334, 477, 517, 606, 733, 759
SfaNI GCATC 3 cut(s) 134, 433, 576
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 2 cut(s) 256, 287
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 4 cut(s) 147, 210, 223, 282
SsiI CCGC 2 cut(s) 192, 290
SspMI CTAG 3 cut(s) 279, 296, 735
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 3 cut(s) 9, 135, 425
TaaI ACNGT 3 cut(s) 535, 643, 776
TaiI ACGT 1 cut(s) 334
TaqI TCGA 3 cut(s) 153, 183, 537
TasI AATT 4 cut(s) 147, 210, 223, 282
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 504, 548
Tru9I TTAA 2 cut(s) 504, 548
TscAI CASTG 4 cut(s) 112, 538, 646, 781
TseI GCWGC 3 cut(s) 157, 604, 631
TspDTI ATGAA 3 cut(s) 332, 525, 682
TspGWI ACGGA 2 cut(s) 375, 472
TspRI CASTG 4 cut(s) 112, 538, 646, 781
Van91I CCANNNNNTGG 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 256, 287
XbaI TCTAGA 1 cut(s) 734
XhoI CTCGAG 1 cut(s) 152
XspI CTAG 3 cut(s) 279, 296, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.