Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Reverse (-)

17008286 .. 17009999

Gene Structure 1714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCGTATTAAGGCTGATAACGTCATTTTATGTCTTCGACACCGGTCATCGGCTGAAAGCCTGAAAACAGAGGGAGGAGTCGTTGGGAACTTGAAGATATTTTCCAAATTGATAAACCATCATTTTCTTCTCCGATCGATCACGGCGGAAATGGACGGCGGTGGATCTTGCTCCGGCGGCAATTTCAAGCTCTACGAGGAGCTGGAATTGCAGGAGTTTCAGGACCAGTTCGTGATCAAATCCGTCGCGGCTCCGGATCGAGGATTCTCCATCGACCACCGCGACGGCATTATTGAGCCGCTCAACGGCGATTCTTCTTCTTCTTCTGTAAGTCCCTCGAAAACCTCGACGATATACGGAGTGGCGGGATCGATCAGATTGCTTGCAGGAAATTATGTACTTGTAATAACTTCGCGGACGGAAGTCGGGAATTATCTCGGCTTCCCTGTTTACAGAGTAAACTCGATGAGGTTTCTGTCCTGCAATGAGGGTTTGAAGAATTCAACTGCTCAGGAGAAAAAAGATGAGGCTTACTTCATGGCTCTGTTGAAAACAGTCCAATCAACTCCGGGGTTGTACTTCTCGTATGAGACTGATATAACACTCAACTTTCAAAGAAGATGTAAGTTAGTTGAAGGATGGATGGCCAAACCAATATGGAAGCAGGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

225

Amino Acids

24.89

Weight (kDa)

8.61

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	119 - 209	2e-16	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	655
AccBSI	CCGCTC	1 cut(s)	301
AccII	CGCG	3 cut(s)	248, 282, 415
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	8 cut(s)	146, 159, 177, 248, 280, 299, 365, 415
AclWI	GGATC	3 cut(s)	172, 264, 376
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	499
AfaI	GTAC	2 cut(s)	399, 578
AfiI	CCNNNNNNNGG	3 cut(s)	49, 260, 305
AgeI	ACCGGT	1 cut(s)	42
AgsI	TTSAA	7 cut(s)	94, 187, 496, 504, 550, 614, 635
AluBI	AGCT	3 cut(s)	190, 202, 672
AluI	AGCT	3 cut(s)	190, 202, 672
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	3 cut(s)	172, 264, 376
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	1 cut(s)	645
ApoI	RAATTY	1 cut(s)	499
AsiGI	ACCGGT	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	1 cut(s)	570
AvaII	GGWCC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	647
BbsI	GAAGAC	1 cut(s)	26
BccI	CCATC	4 cut(s)	126, 278, 633, 637
BceAI	ACGGC	4 cut(s)	159, 172, 301, 322
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BclI	TGATCA	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	3 cut(s)	178, 249, 299
BlsI	GCNGC	3 cut(s)	179, 250, 300
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	570
BoxI	GACNNNNGTC	2 cut(s)	43, 422
BpiI	GAAGAC	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	570
Bsa29I	ATCGAT	2 cut(s)	137, 371
BsaJI	CCNNGG	1 cut(s)	569
BsaWI	WCCGGW	2 cut(s)	42, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 260, 305
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	490
BseAI	TCCGGA	1 cut(s)	253
BseCI	ATCGAT	2 cut(s)	137, 371
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	2 cut(s)	644, 648
BseLI	CCNNNNNNNGG	3 cut(s)	49, 260, 305
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	2 cut(s)	90, 212
Bsh1236I	CGCG	3 cut(s)	248, 282, 415
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	647
BshTI	ACCGGT	1 cut(s)	42
BshVI	ATCGAT	2 cut(s)	137, 371
BsiEI	CGRYCG	1 cut(s)	137
BsiSI	CCGG	4 cut(s)	43, 174, 254, 569
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	3 cut(s)	49, 260, 305
BsmAI	GTCTC	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	647
Bsp13I	TCCGGA	1 cut(s)	253
Bsp143I	GATC	7 cut(s)	134, 138, 164, 234, 256, 368, 372
BspACI	CCGC	8 cut(s)	146, 159, 177, 248, 280, 299, 365, 415
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	1 cut(s)	523
BspDI	ATCGAT	2 cut(s)	137, 371
BspEI	TCCGGA	1 cut(s)	253
BspFNI	CGCG	3 cut(s)	248, 282, 415
BspLI	GGNNCC	1 cut(s)	252
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	3 cut(s)	172, 264, 376
BsrBI	CCGCTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	7 cut(s)	134, 138, 164, 234, 256, 368, 372
Bst4CI	ACNGT	1 cut(s)	556
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	510
BstF5I	GGATG	2 cut(s)	644, 648
BstFNI	CGCG	3 cut(s)	248, 282, 415
BstKTI	GATC	7 cut(s)	137, 141, 167, 237, 259, 371, 375
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	7 cut(s)	134, 138, 164, 234, 256, 368, 372
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 208
BstPAI	GACNNNNGTC	2 cut(s)	43, 422
BstSCI	CCNGG	1 cut(s)	568
BstUI	CGCG	3 cut(s)	248, 282, 415
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
Bsu15I	ATCGAT	2 cut(s)	137, 371
BsuRI	GGCC	1 cut(s)	647
BsuTUI	ATCGAT	2 cut(s)	137, 371
BtsCI	GGATG	2 cut(s)	644, 648
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	223
ClaI	ATCGAT	2 cut(s)	137, 371
Csp6I	GTAC	2 cut(s)	398, 577
CspAI	ACCGGT	1 cut(s)	42
CviAII	CATG	1 cut(s)	538
CviQI	GTAC	2 cut(s)	398, 577
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	7 cut(s)	136, 140, 166, 236, 258, 370, 374
DpnII	GATC	7 cut(s)	134, 138, 164, 234, 256, 368, 372
EaeI	YGGCCR	1 cut(s)	645
EciI	GGCGGA	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	499
FaeI	CATG	1 cut(s)	541
FaiI	YATR	7 cut(s)	31, 355, 396, 539, 588, 599, 658
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	1 cut(s)	537
FauI	CCCGC	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	178, 249, 299
FokI	GGATG	2 cut(s)	651, 655
Fsp4HI	GCNGC	3 cut(s)	178, 249, 299
GluI	GCNGC	3 cut(s)	178, 249, 299
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	4 cut(s)	43, 174, 254, 569
Hin1II	CATG	1 cut(s)	541
HinfI	GANTC	3 cut(s)	78, 264, 311
HpaII	CCGG	4 cut(s)	43, 174, 254, 569
Hpy166II	GTNNAC	2 cut(s)	451, 460
Hpy188I	TCNGA	2 cut(s)	134, 377
Hpy188III	TCNNGA	5 cut(s)	221, 232, 254, 427, 512
Hpy8I	GTNNAC	2 cut(s)	451, 460
Hpy99I	CGWCG	3 cut(s)	248, 287, 352
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	211, 386, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 208
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	541
Kpn2I	TCCGGA	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	7 cut(s)	134, 138, 164, 234, 256, 368, 372
LmnI	GCTCC	3 cut(s)	176, 199, 256
MaeII	ACGT	1 cut(s)	21
MalI	GATC	7 cut(s)	136, 140, 166, 236, 258, 370, 374
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	7 cut(s)	134, 138, 164, 234, 256, 368, 372
MboII	GAAGA	9 cut(s)	26, 106, 119, 306, 309, 312, 315, 508, 630
MflI	RGATCY	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	6 cut(s)	107, 181, 206, 391, 430, 499
MluNI	TGGCCA	1 cut(s)	647
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	9 cut(s)	64, 68, 190, 254, 346, 355, 462, 481, 520
Mox20I	TGGCCA	1 cut(s)	647
MroI	TCCGGA	1 cut(s)	253
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	647
MspI	CCGG	4 cut(s)	43, 174, 254, 569
MspR9I	CCNGG	1 cut(s)	570
MvnI	CGCG	3 cut(s)	248, 282, 415
MwoI	GCNNNNNNNGC	2 cut(s)	177, 208
NciI	CCSGG	1 cut(s)	570
NdeII	GATC	7 cut(s)	134, 138, 164, 234, 256, 368, 372
NlaIII	CATG	1 cut(s)	541
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 344
PfeI	GAWTC	2 cut(s)	264, 311
PinAI	ACCGGT	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	179, 250, 300
Ple19I	CGATCG	1 cut(s)	137
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PshAI	GACNNNNGTC	2 cut(s)	43, 422
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	164
PvuI	CGATCG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	399, 578
RsaNI	GTAC	2 cut(s)	398, 577
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	3 cut(s)	178, 249, 299
Sau3AI	GATC	7 cut(s)	134, 138, 164, 234, 256, 368, 372
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	570
SetI	ASST	7 cut(s)	24, 192, 204, 347, 473, 669, 674
SinI	GGWCC	1 cut(s)	223
Sse9I	AATT	6 cut(s)	107, 181, 206, 391, 430, 499
SsiI	CCGC	8 cut(s)	146, 159, 177, 248, 280, 299, 365, 415
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	8 cut(s)	37, 137, 259, 273, 338, 347, 371, 464
TasI	AATT	6 cut(s)	107, 181, 206, 391, 430, 499
TatI	WGTACW	2 cut(s)	397, 576
TauI	GCSGC	3 cut(s)	180, 251, 301
TfiI	GAWTC	2 cut(s)	264, 311
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	526
TspGWI	ACGGA	3 cut(s)	232, 372, 434
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.