Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000765

Physical Location & Seq

Genomic Coordinates Forward (+)

20859404 .. 20860453

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCTCGGCATCGGCGCAATTCCCTCAGTTTTTCTAGCCCTCGGCGTTTTAGCCATGCCCGAGTCACCACGCTGGCTCGTCATGCAAGGGAGACTCGGAGACGCCAAGCGAGTACTAAATAGAACATCATCTTCTGAAGAGGAATCGCAGCTCAGACTAGACGAGATTAAAGAAGCTGCAGGAATCCCCAAAGACTCAAAGGATGAGGTCGTTCAGGTTTCTAAACGCAGCCAAGGTGAAGGTATATGGAAGGAATTGCTCATTCGCCCTACGCCGGCCGTTCGCCACATTTTAATAGCAGCCCTTGGTATCCACTTCTTTCAACAAGTGTCGGGTACAGACTCTGTGGTTTTGTACAGCCCCAGGATCTTCGAGAAAGCGGGAATCACTTCTTACAATGACAAGCTACTTGCAACCGTGGCTGTTGGATTTGTCAAGACCATTGCAATCTTGGTGGCAACATTTCAAGTTGATCGGTTCGGACGTCGTGCTTTGCTTTTAAGCAGCGTGGGTGGAATGGTAGTTTCTTTTACGCTACTCGGTGTGGGTCTTACGCAGGGACGGATCTACAGAGGGTCCTGGGAGGTCCCAGGACCCCTCGGCCATCCTAAAATGTTGCTAGAAATTTTCCGGAGGACCCCTCTCGTACTCGAACACGAGGCCTGTGCTGCTGTGCAGACTGTCTGTGTTGCTGCAGCAGTAGGTTGCAGGTTGCAACGGAGAAGAAGAAAACAGGGGAGAAGAAAGAAAACAGGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

254

Amino Acids

27.73

Weight (kDa)

10.3

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	1 - 182	7.7e-37	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16120 AT2G16130 AT3G18830
fragaria_vesca	FvH4_2g08400 FvH4_2g08400 FvH4_2g08430 FvH4_2g08430 FvH4_2g08430
malus_domestica	MD05G1068600.v1.1 MD05G1068700.v1.1 MD05G1069100.v1.1 MD05G1069700.v1.1 MD10G1078900.v1.1 MD10G1079100.v1.1 MD10G1079200.v1.1 MD10G1079500.v1.1 MD10G1079600.v1.1 MD10G1079700.v1.1 MD10G1079800.v1.1 MD10G1079900.v1.1 MD10G1080000.v1.1 MD10G1080100.v1.1 MD10G1106100.v1.1 MD12G1026200.v1.1 MD17G1247200.v1.1
prunus_persica	Prupe.3G071100_v2.0.a1 Prupe.8G100700_v2.0.a1 Prupe.8G101000_v2.0.a1 Prupe.8G101200_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G105300_v2.0.a1 Prupe.8G105400_v2.0.a1 Prupe.8G105500_v2.0.a1 Prupe.8G105600_v2.0.a1
pyrus_communis	pycom04g19030 pycom04g19050 pycom04g19090 pycom04g19120 pycom05g05990 pycom05g06030 pycom10g06180 pycom10g06270 pycom10g06280 pycom10g06300 pycom10g06330 pycom10g06340 pycom12g02550 pycom17g26280
rosa_chinensis	RchiOBHm_Chr6g0263471 RchiOBHm_Chr6g0263621 RchiOBHm_Chr6g0263691
rosa_laevigata	RLG00000014328 RLG00000014330
rosa_multiflora	Rmu_co8086996.1_g000001 Rmu_co8446581.1_g000001 Rmu_sc0000565.1_g000052 Rmu_sc0010495.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431110 Rroxscaffold_7G00204150
rosa_rugosa	Rorug06G0005300 Rorug06G0005700
rosa_samantha	Rh6AG124800 Rh6BG120900 Rh6CG119100 Rh6DG107300 Rh6DG107500
rosa_wichuraiana	Rw0G005290 Rw0G005320 Rw6G010850 Rw6G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	699
AccIII	TCCGGA	1 cut(s)	630
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	2 cut(s)	374, 572
AcoI	YGGCCR	2 cut(s)	276, 601
AcsI	RAATTY	1 cut(s)	624
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	2 cut(s)	102, 484
AfaI	GTAC	4 cut(s)	114, 337, 356, 648
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	323, 467
AjnI	CCWGG	3 cut(s)	362, 578, 589
AluBI	AGCT	3 cut(s)	151, 176, 406
AluI	AGCT	3 cut(s)	151, 176, 406
Alw26I	GTCTC	2 cut(s)	85, 93
AlwI	GGATC	2 cut(s)	374, 572
AlwNI	CAGNNNCTG	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	59
Aor13HI	TCCGGA	1 cut(s)	630
AoxI	GGCC	3 cut(s)	276, 601, 660
ApeKI	GCWGC	8 cut(s)	148, 176, 228, 299, 504, 668, 692, 695
ApoI	RAATTY	1 cut(s)	624
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	4 cut(s)	576, 586, 593, 636
AsuHPI	GGTGA	2 cut(s)	57, 248
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	4 cut(s)	576, 586, 593, 636
BauI	CACGAG	1 cut(s)	656
BbvI	GCAGC	8 cut(s)	160, 163, 240, 311, 516, 655, 679, 707
BccI	CCATC	1 cut(s)	612
BceAI	ACGGC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	3 cut(s)	364, 580, 591
BciVI	GTATCC	1 cut(s)	320
BcoDI	GTCTC	2 cut(s)	85, 93
BfaI	CTAG	3 cut(s)	35, 158, 620
BfmI	CTRYAG	3 cut(s)	177, 568, 693
BfuAI	ACCTGC	1 cut(s)	699
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	8 cut(s)	149, 177, 229, 300, 505, 669, 693, 696
BlsI	GCNGC	8 cut(s)	150, 178, 230, 301, 506, 670, 694, 697
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	3 cut(s)	364, 580, 591
Bme18I	GGWCC	4 cut(s)	576, 586, 593, 636
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	4 cut(s)	576, 586, 593, 636
BmiI	GGNNCC	4 cut(s)	577, 588, 595, 638
BmrFI	CCNGG	3 cut(s)	364, 580, 591
BmsI	GCATC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	625, 657
BsaHI	GRCGYC	2 cut(s)	102, 484
BsaJI	CCNNGG	8 cut(s)	40, 232, 304, 362, 417, 579, 589, 598
BsaWI	WCCGGW	1 cut(s)	630
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	630
BseBI	CCWGG	3 cut(s)	364, 580, 591
BseDI	CCNNGG	8 cut(s)	40, 232, 304, 362, 417, 579, 589, 598
BseGI	GGATG	2 cut(s)	208, 604
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	39, 166
BseX3I	CGGCCG	1 cut(s)	276
BseXI	GCAGC	8 cut(s)	160, 163, 240, 311, 516, 655, 679, 707
BsgI	GTGCAG	1 cut(s)	695
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	278, 603, 662
BsiEI	CGRYCG	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	275, 631
BslFI	GGGAC	2 cut(s)	572, 573
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	85, 93
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	2 cut(s)	572, 573
BsnI	GGCC	3 cut(s)	278, 603, 662
BsoBI	CYCGRG	1 cut(s)	59
Bsp13I	TCCGGA	1 cut(s)	630
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	366, 472, 564
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	3 cut(s)	278, 603, 662
BspCNI	CTCAG	2 cut(s)	38, 165
BspEI	TCCGGA	1 cut(s)	630
BspLI	GGNNCC	4 cut(s)	577, 588, 595, 638
BspMAI	CTGCAG	2 cut(s)	181, 697
BspMI	ACCTGC	1 cut(s)	699
BspPI	GGATC	2 cut(s)	374, 572
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	274
BsrGI	TGTACA	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	8 cut(s)	40, 232, 304, 362, 417, 579, 589, 598
BssMI	GATC	3 cut(s)	366, 472, 564
BssNI	GRCGYC	2 cut(s)	102, 484
BssSI	CACGAG	1 cut(s)	656
BssT1I	CCWWGG	2 cut(s)	232, 304
Bst2BI	CACGAG	1 cut(s)	656
Bst2UI	CCWGG	3 cut(s)	364, 580, 591
Bst4CI	ACNGT	2 cut(s)	418, 682
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	2 cut(s)	102, 484
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	74, 276
BstDEI	CTNAG	2 cut(s)	25, 152
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	208, 604
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	3 cut(s)	369, 475, 567
BstMAI	GTCTC	2 cut(s)	85, 93
BstMBI	GATC	3 cut(s)	366, 472, 564
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 419, 668
BstNI	CCWGG	3 cut(s)	364, 580, 591
BstSCI	CCNGG	3 cut(s)	362, 578, 589
BstSFI	CTRYAG	3 cut(s)	177, 568, 693
BstV1I	GCAGC	8 cut(s)	160, 163, 240, 311, 516, 655, 679, 707
BstX2I	RGATCY	2 cut(s)	366, 564
BstYI	RGATCY	2 cut(s)	366, 564
BstZI	CGGCCG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	3 cut(s)	278, 603, 662
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	208, 604
BveI	ACCTGC	1 cut(s)	699
Cac8I	GCNNGC	2 cut(s)	74, 276
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	4 cut(s)	576, 586, 593, 636
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	4 cut(s)	113, 336, 355, 647
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	2 cut(s)	55, 82
CviQI	GTAC	4 cut(s)	113, 336, 355, 647
DdeI	CTNAG	2 cut(s)	25, 152
DpnI	GATC	3 cut(s)	368, 474, 566
DpnII	GATC	3 cut(s)	366, 472, 564
EaeI	YGGCCR	2 cut(s)	276, 601
EagI	CGGCCG	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
EclXI	CGGCCG	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	232, 304
Eco147I	AGGCCT	1 cut(s)	662
Eco47I	GGWCC	4 cut(s)	576, 586, 593, 636
Eco52I	CGGCCG	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	59
EcoO109I	RGGNCCY	4 cut(s)	576, 586, 593, 636
EcoRII	CCWGG	3 cut(s)	362, 578, 589
EcoT14I	CCWWGG	2 cut(s)	232, 304
ErhI	CCWWGG	2 cut(s)	232, 304
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	2 cut(s)	58, 85
FaiI	YATR	4 cut(s)	56, 83, 245, 247
FaqI	GGGAC	2 cut(s)	572, 573
FatI	CATG	2 cut(s)	54, 81
FauI	CCCGC	1 cut(s)	373
Fnu4HI	GCNGC	8 cut(s)	149, 177, 229, 300, 505, 669, 693, 696
FokI	GGATG	2 cut(s)	215, 591
Fsp4HI	GCNGC	8 cut(s)	149, 177, 229, 300, 505, 669, 693, 696
FspBI	CTAG	3 cut(s)	35, 158, 620
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	8 cut(s)	149, 177, 229, 300, 505, 669, 693, 696
HaeIII	GGCC	3 cut(s)	278, 603, 662
HapII	CCGG	2 cut(s)	275, 631
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	17
Hin1I	GRCGYC	2 cut(s)	102, 484
Hin1II	CATG	2 cut(s)	58, 85
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	7 cut(s)	62, 93, 143, 183, 194, 341, 384
HpaII	CCGG	2 cut(s)	275, 631
HphI	GGTGA	2 cut(s)	57, 248
Hpy188I	TCNGA	4 cut(s)	98, 136, 155, 482
Hpy188III	TCNNGA	3 cut(s)	373, 436, 631
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	2 cut(s)	233, 244
HpyCH4III	ACNGT	2 cut(s)	418, 682
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	8 cut(s)	85, 179, 413, 446, 676, 695, 708, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 419, 668
HpyF3I	CTNAG	2 cut(s)	25, 152
HpySE526I	ACGT	1 cut(s)	484
Hsp92I	GRCGYC	2 cut(s)	102, 484
Hsp92II	CATG	2 cut(s)	58, 85
HspAI	GCGC	1 cut(s)	15
Kpn2I	TCCGGA	1 cut(s)	630
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	366, 472, 564
Lsp1109I	GCAGC	8 cut(s)	160, 163, 240, 311, 516, 655, 679, 707
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	3 cut(s)	35, 158, 620
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	3 cut(s)	368, 474, 566
MboI	GATC	3 cut(s)	366, 472, 564
MboII	GAAGA	6 cut(s)	123, 149, 361, 735, 738, 753
MflI	RGATCY	2 cut(s)	366, 564
MluCI	AATT	3 cut(s)	18, 254, 624
MlyI	GAGTC	4 cut(s)	71, 87, 188, 335
MmeI	TCCRAC	1 cut(s)	406
MroI	TCCGGA	1 cut(s)	630
MroNI	GCCGGC	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	4 cut(s)	168, 293, 500, 760
MspI	CCGG	2 cut(s)	275, 631
MspR9I	CCNGG	3 cut(s)	364, 580, 591
MvaI	CCWGG	3 cut(s)	364, 580, 591
MwoI	GCNNNNNNNGC	3 cut(s)	82, 419, 668
NaeI	GCCGGC	1 cut(s)	276
NdeII	GATC	3 cut(s)	366, 472, 564
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	58, 85
NlaIV	GGNNCC	4 cut(s)	577, 588, 595, 638
NmeAIII	GCCGAG	2 cut(s)	21, 579
NmuCI	GTSAC	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	662
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PdiI	GCCGGC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	143, 183, 384
PkrI	GCNGC	8 cut(s)	150, 178, 230, 301, 506, 670, 694, 697
PleI	GAGTC	4 cut(s)	70, 87, 188, 335
PpsI	GAGTC	4 cut(s)	70, 87, 188, 335
PpuMI	RGGWCCY	4 cut(s)	576, 586, 593, 636
Psp5II	RGGWCCY	4 cut(s)	576, 586, 593, 636
Psp6I	CCWGG	3 cut(s)	362, 578, 589
PspGI	CCWGG	3 cut(s)	362, 578, 589
PspN4I	GGNNCC	4 cut(s)	577, 588, 595, 638
PspPI	GGNCC	4 cut(s)	576, 586, 593, 636
PspPPI	RGGWCCY	4 cut(s)	576, 586, 593, 636
PstI	CTGCAG	2 cut(s)	181, 697
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	366, 564
RsaI	GTAC	4 cut(s)	114, 337, 356, 648
RsaNI	GTAC	4 cut(s)	113, 336, 355, 647
SaqAI	TTAA	4 cut(s)	168, 293, 500, 760
SatI	GCNGC	8 cut(s)	149, 177, 229, 300, 505, 669, 693, 696
Sau3AI	GATC	3 cut(s)	366, 472, 564
Sau96I	GGNCC	4 cut(s)	576, 586, 593, 636
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	4 cut(s)	71, 87, 188, 335
ScrFI	CCNGG	3 cut(s)	364, 580, 591
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	3 cut(s)	177, 568, 693
SinI	GGWCC	4 cut(s)	576, 586, 593, 636
Sse9I	AATT	3 cut(s)	18, 254, 624
SseBI	AGGCCT	1 cut(s)	662
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	3 cut(s)	35, 158, 620
StuI	AGGCCT	1 cut(s)	662
StyD4I	CCNGG	3 cut(s)	362, 578, 589
StyI	CCWWGG	2 cut(s)	232, 304
TaaI	ACNGT	2 cut(s)	418, 682
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	2 cut(s)	372, 651
TasI	AATT	3 cut(s)	18, 254, 624
TatI	WGTACW	2 cut(s)	112, 354
TfiI	GAWTC	3 cut(s)	143, 183, 384
Tru1I	TTAA	4 cut(s)	168, 293, 500, 760
Tru9I	TTAA	4 cut(s)	168, 293, 500, 760
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	8 cut(s)	148, 176, 228, 299, 504, 668, 692, 695
Tsp45I	GTSAC	1 cut(s)	63
TspGWI	ACGGA	2 cut(s)	577, 733
VpaK11BI	GGWCC	4 cut(s)	576, 586, 593, 636
XapI	RAATTY	1 cut(s)	624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	3 cut(s)	35, 158, 620
ZraI	GACGTC	1 cut(s)	485
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.