Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446581.1

Orthogroup ID

OG0000765

Physical Location & Seq

Genomic Coordinates Reverse (-)

317 .. 1345

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446581.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgctcggcgtcggtgcaattccctccgtcttcctcgccctcggcgtcttagccatgccggaatcccctcgctggctcgtcatgcagggccgcctcggcgacgccaagagagtcctcgaccgaacttcagactccatggaagagtccaaactccgactcgctgacatcaaagaagccgccggaatccccgagcactgcaacgaggacgtcgttcaagtcccaaaacgcagccacggtgaagacgtctggaaagagctcatactccgcccgacccccgccgtccgtcacattctcatcgccgccgtcggtatacacttcttccaacaagcctcaggcatcgacgccgtcgttttgtacagcccgagaatcttcacaaaggccggaatcaagaacaaggacaaactcctcctcgccaccatagccgtcggatccgtcaagacagccttcatcctcgtcgcaacgtttcttctggacaggataggacgccgtcctctgcttcttaccagcgtagcagggatgatagcctcactcggctgtctcggtttcagcctcaccatcatcgaccacagcgacgagaagatcatgtgggccattgttctctccatcaccatggtcttattctacgtcgcgttcttctccatcggaatgggccccatcacgtgggtctacagctccgagatcttcccgttaaagctacgagctcaggggtgtagtattggagtcgccgtcaacagagtcgtcagtgggatactctcaatgacttttatatccctgtacgatgccataactattggcggagccttctttcttttcgccggaattgcggcggttggctgggtgttcttctatacaatgctaccggagacacaggggagaacccttgaagatatggaagtcctttttgggaagttccacaagtggaaagaggccaatgccctgctcaaaaataagcaggtggatcctaatagaaatggaaacgacaccgccagcggcggtcaggttcaattaggaacaaaagggcaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

342

Amino Acids

37.28

Weight (kDa)

8.9

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16120 AT2G16130 AT3G18830
fragaria_vesca	FvH4_2g08400 FvH4_2g08400 FvH4_2g08430 FvH4_2g08430 FvH4_2g08430
malus_domestica	MD05G1068600.v1.1 MD05G1068700.v1.1 MD05G1069100.v1.1 MD05G1069700.v1.1 MD10G1078900.v1.1 MD10G1079100.v1.1 MD10G1079200.v1.1 MD10G1079500.v1.1 MD10G1079600.v1.1 MD10G1079700.v1.1 MD10G1079800.v1.1 MD10G1079900.v1.1 MD10G1080000.v1.1 MD10G1080100.v1.1 MD10G1106100.v1.1 MD12G1026200.v1.1 MD17G1247200.v1.1
prunus_persica	Prupe.3G071100_v2.0.a1 Prupe.8G100700_v2.0.a1 Prupe.8G101000_v2.0.a1 Prupe.8G101200_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G105300_v2.0.a1 Prupe.8G105400_v2.0.a1 Prupe.8G105500_v2.0.a1 Prupe.8G105600_v2.0.a1
pyrus_communis	pycom04g19030 pycom04g19050 pycom04g19090 pycom04g19120 pycom05g05990 pycom05g06030 pycom10g06180 pycom10g06270 pycom10g06280 pycom10g06300 pycom10g06330 pycom10g06340 pycom12g02550 pycom17g26280
rosa_chinensis	RchiOBHm_Chr6g0263471 RchiOBHm_Chr6g0263621 RchiOBHm_Chr6g0263691
rosa_laevigata	RLG00000014328 RLG00000014330
rosa_multiflora	Rmu_co8086996.1_g000001 Rmu_co8446581.1_g000001 Rmu_sc0000565.1_g000052 Rmu_sc0010495.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431110 Rroxscaffold_7G00204150
rosa_rugosa	Rorug06G0005300 Rorug06G0005700
rosa_samantha	Rh6AG124800 Rh6BG120900 Rh6CG119100 Rh6DG107300 Rh6DG107500
rosa_wichuraiana	Rw0G005290 Rw0G005320 Rw6G010850 Rw6G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	943
AatII	GACGTC	2 cut(s)	210, 246
Acc36I	ACCTGC	1 cut(s)	943
AccB7I	CCANNNNNTGG	1 cut(s)	660
AccI	GTMKAC	2 cut(s)	310, 666
AccII	CGCG	1 cut(s)	629
AclI	AACGTT	1 cut(s)	461
AclWI	GGATC	4 cut(s)	423, 436, 953, 966
AcuI	CTGAAG	1 cut(s)	111
AcvI	CACGTG	1 cut(s)	660
AcyI	GRCGYC	7 cut(s)	9, 45, 102, 207, 243, 342, 484
AfaI	GTAC	2 cut(s)	356, 776
AfiI	CCNNNNNNNGG	2 cut(s)	72, 660
AgsI	TTSAA	3 cut(s)	215, 884, 1004
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AluBI	AGCT	4 cut(s)	256, 672, 694, 701
AluI	AGCT	4 cut(s)	256, 672, 694, 701
Alw21I	GWGCWC	3 cut(s)	195, 258, 703
Alw26I	GTCTC	2 cut(s)	542, 857
AlwI	GGATC	4 cut(s)	423, 436, 953, 966
Ama87I	CYCGRG	2 cut(s)	188, 361
AoxI	GGCC	5 cut(s)	88, 378, 588, 649, 927
ApaI	GGGCCC	1 cut(s)	653
ApeKI	GCWGC	1 cut(s)	228
AspS9I	GGNCC	4 cut(s)	88, 588, 649, 650
AsuHPI	GGTGA	3 cut(s)	248, 544, 598
AvaI	CYCGRG	2 cut(s)	188, 361
AxyI	CCTNAGG	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	653
BamHI	GGATCC	2 cut(s)	428, 958
BanII	GRGCYC	3 cut(s)	258, 653, 703
BbrPI	CACGTG	1 cut(s)	660
BbsI	GAAGAC	2 cut(s)	22, 246
Bbv12I	GWGCWC	3 cut(s)	195, 258, 703
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	4 cut(s)	563, 611, 647, 662
BceAI	ACGGC	6 cut(s)	263, 287, 329, 407, 471, 710
BciVI	GTATCC	1 cut(s)	741
BcoDI	GTCTC	2 cut(s)	542, 857
BfmI	CTRYAG	1 cut(s)	667
BfuAI	ACCTGC	1 cut(s)	943
BfuI	GTATCC	1 cut(s)	741
BglI	GCCNNNNNGGC	1 cut(s)	96
BglII	AGATCT	1 cut(s)	678
BisI	GCNGC	6 cut(s)	91, 177, 229, 300, 825, 991
BlsI	GCNGC	6 cut(s)	92, 178, 230, 301, 826, 992
BmeT110I	CYCGRG	2 cut(s)	188, 361
BmgT120I	GGNCC	4 cut(s)	88, 588, 649, 650
BmiI	GGNNCC	5 cut(s)	430, 651, 652, 799, 960
BmsI	GCATC	2 cut(s)	345, 769
BpiI	GAAGAC	2 cut(s)	22, 246
Bpu10I	CCTNAGC	1 cut(s)	702
BsaAI	YACGTR	1 cut(s)	660
BsaHI	GRCGYC	7 cut(s)	9, 45, 102, 207, 243, 342, 484
BsaJI	CCNNGG	5 cut(s)	40, 94, 135, 232, 609
BsaWI	WCCGGW	1 cut(s)	859
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 660
Bse21I	CCTNAGG	1 cut(s)	331
BseDI	CCNNGG	5 cut(s)	40, 94, 135, 232, 609
BseGI	GGATG	2 cut(s)	447, 522
BseLI	CCNNNNNNNGG	2 cut(s)	72, 660
BseMII	CTCAG	2 cut(s)	345, 716
BseRI	GAGGAG	2 cut(s)	395, 398
BseSI	GKGCMC	1 cut(s)	653
BseXI	GCAGC	1 cut(s)	240
BseYI	CCCAGC	1 cut(s)	834
Bsh1236I	CGCG	1 cut(s)	629
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	5 cut(s)	90, 380, 590, 651, 929
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	3 cut(s)	195, 258, 703
BsiHKCI	CYCGRG	2 cut(s)	188, 361
BsiSI	CCGG	5 cut(s)	59, 180, 381, 816, 860
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	72, 660
BsmAI	GTCTC	2 cut(s)	542, 857
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	5 cut(s)	90, 380, 590, 651, 929
BsoBI	CYCGRG	2 cut(s)	188, 361
Bsp120I	GGGCCC	1 cut(s)	649
Bsp1286I	GDGCHC	4 cut(s)	195, 258, 653, 703
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	4 cut(s)	428, 579, 678, 958
Bsp19I	CCATGG	2 cut(s)	135, 609
BspANI	GGCC	5 cut(s)	90, 380, 590, 651, 929
BspCNI	CTCAG	2 cut(s)	344, 715
BspFNI	CGCG	1 cut(s)	629
BspLI	GGNNCC	5 cut(s)	430, 651, 652, 799, 960
BspMI	ACCTGC	1 cut(s)	943
BspPI	GGATC	4 cut(s)	423, 436, 953, 966
BsrGI	TGTACA	1 cut(s)	354
BssECI	CCNNGG	5 cut(s)	40, 94, 135, 232, 609
BssMI	GATC	4 cut(s)	428, 579, 678, 958
BssNAI	GTATAC	1 cut(s)	311
BssNI	GRCGYC	7 cut(s)	9, 45, 102, 207, 243, 342, 484
BssT1I	CCWWGG	2 cut(s)	135, 609
Bst1107I	GTATAC	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	7 cut(s)	9, 45, 102, 207, 243, 342, 484
BstAUI	TGTACA	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	660
BstC8I	GCNNGC	2 cut(s)	74, 988
BstDEI	CTNAG	3 cut(s)	49, 331, 702
BstDSI	CCRYGG	3 cut(s)	135, 232, 609
BstF5I	GGATG	2 cut(s)	447, 522
BstFNI	CGCG	1 cut(s)	629
BstKTI	GATC	4 cut(s)	431, 582, 681, 961
BstMAI	GTCTC	2 cut(s)	542, 857
BstMBI	GATC	4 cut(s)	428, 579, 678, 958
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 96, 419, 821
BstSFI	CTRYAG	1 cut(s)	667
BstSLI	GKGCMC	1 cut(s)	653
BstUI	CGCG	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	240
BstV2I	GAAGAC	2 cut(s)	22, 246
BstX2I	RGATCY	3 cut(s)	428, 678, 958
BstXI	CCANNNNNNTGG	2 cut(s)	610, 646
BstYI	RGATCY	3 cut(s)	428, 678, 958
BstZ17I	GTATAC	1 cut(s)	311
Bsu36I	CCTNAGG	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	741
BsuRI	GGCC	5 cut(s)	90, 380, 590, 651, 929
BtgI	CCRYGG	3 cut(s)	135, 232, 609
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	447, 522
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	193, 748
BveI	ACCTGC	1 cut(s)	943
Cac8I	GCNNGC	2 cut(s)	74, 988
Cfr13I	GGNCC	4 cut(s)	88, 588, 649, 650
CseI	GACGC	4 cut(s)	34, 110, 350, 492
Csp6I	GTAC	2 cut(s)	355, 775
CviAII	CATG	5 cut(s)	55, 82, 136, 583, 610
CviQI	GTAC	2 cut(s)	355, 775
DdeI	CTNAG	3 cut(s)	49, 331, 702
DpnI	GATC	4 cut(s)	430, 581, 680, 960
DpnII	GATC	4 cut(s)	428, 579, 678, 958
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
EciI	GGCGGA	2 cut(s)	254, 810
Ecl136II	GAGCTC	2 cut(s)	256, 701
Eco130I	CCWWGG	2 cut(s)	135, 609
Eco24I	GRGCYC	3 cut(s)	258, 653, 703
Eco53kI	GAGCTC	2 cut(s)	256, 701
Eco57I	CTGAAG	1 cut(s)	111
Eco72I	CACGTG	1 cut(s)	660
Eco81I	CCTNAGG	1 cut(s)	331
Eco88I	CYCGRG	2 cut(s)	188, 361
EcoICRI	GAGCTC	2 cut(s)	256, 701
EcoO109I	RGGNCCY	1 cut(s)	650
EcoT14I	CCWWGG	2 cut(s)	135, 609
EcoT38I	GRGCYC	3 cut(s)	258, 653, 703
ErhI	CCWWGG	2 cut(s)	135, 609
FaeI	CATG	5 cut(s)	58, 85, 139, 586, 613
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	5 cut(s)	54, 81, 135, 582, 609
FauI	CCCGC	1 cut(s)	283
FblI	GTMKAC	2 cut(s)	310, 666
Fnu4HI	GCNGC	6 cut(s)	91, 177, 229, 300, 825, 991
FokI	GGATG	2 cut(s)	434, 529
FriOI	GRGCYC	3 cut(s)	258, 653, 703
Fsp4HI	GCNGC	6 cut(s)	91, 177, 229, 300, 825, 991
GluI	GCNGC	6 cut(s)	91, 177, 229, 300, 825, 991
GsaI	CCCAGC	1 cut(s)	838
HaeIII	GGCC	5 cut(s)	90, 380, 590, 651, 929
HapII	CCGG	5 cut(s)	59, 180, 381, 816, 860
HgaI	GACGC	4 cut(s)	34, 110, 350, 492
Hin1I	GRCGYC	7 cut(s)	9, 45, 102, 207, 243, 342, 484
Hin1II	CATG	5 cut(s)	58, 85, 139, 586, 613
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HpaII	CCGG	5 cut(s)	59, 180, 381, 816, 860
HphI	GGTGA	3 cut(s)	248, 544, 598
Hpy166II	GTNNAC	3 cut(s)	311, 667, 730
Hpy188I	TCNGA	5 cut(s)	130, 155, 428, 644, 676
Hpy188III	TCNNGA	4 cut(s)	247, 388, 436, 470
Hpy8I	GTNNAC	3 cut(s)	311, 667, 730
HpyAV	CCTTC	2 cut(s)	454, 811
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	5 cut(s)	207, 243, 461, 624, 659
HpyCH4V	TGCA	3 cut(s)	17, 85, 198
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 96, 419, 821
HpyF3I	CTNAG	3 cut(s)	49, 331, 702
HpySE526I	ACGT	5 cut(s)	207, 243, 461, 624, 659
Hsp92I	GRCGYC	7 cut(s)	9, 45, 102, 207, 243, 342, 484
Hsp92II	CATG	5 cut(s)	58, 85, 139, 586, 613
Kzo9I	GATC	4 cut(s)	428, 579, 678, 958
LmnI	GCTCC	2 cut(s)	677, 797
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	2 cut(s)	345, 769
MaeII	ACGT	5 cut(s)	207, 243, 461, 624, 659
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	4 cut(s)	430, 581, 680, 960
MboI	GATC	4 cut(s)	428, 579, 678, 958
MflI	RGATCY	3 cut(s)	428, 678, 958
MhlI	GDGCHC	4 cut(s)	195, 258, 653, 703
MluCI	AATT	3 cut(s)	18, 819, 1004
MlyI	GAGTC	6 cut(s)	120, 125, 150, 152, 729, 744
MmeI	TCCRAC	3 cut(s)	178, 346, 406
MseI	TTAA	1 cut(s)	689
MslI	CAYNNNNRTG	2 cut(s)	608, 644
MspA1I	CMGCKG	1 cut(s)	990
MspI	CCGG	5 cut(s)	59, 180, 381, 816, 860
MvnI	CGCG	1 cut(s)	629
MwoI	GCNNNNNNNGC	4 cut(s)	82, 96, 419, 821
NcoI	CCATGG	2 cut(s)	135, 609
NdeII	GATC	4 cut(s)	428, 579, 678, 958
NlaIII	CATG	5 cut(s)	58, 85, 139, 586, 613
NlaIV	GGNNCC	5 cut(s)	430, 651, 652, 799, 960
NmeAIII	GCCGAG	3 cut(s)	21, 75, 510
NmuCI	GTSAC	1 cut(s)	284
PaqCI	CACCTGC	1 cut(s)	943
PcsI	WCGNNNNNNNCGW	5 cut(s)	42, 207, 240, 345, 567
PfeI	GAWTC	4 cut(s)	62, 183, 366, 384
PflFI	GACNNNGTC	2 cut(s)	344, 486
PflMI	CCANNNNNTGG	1 cut(s)	660
PkrI	GCNGC	6 cut(s)	92, 178, 230, 301, 826, 992
PleI	GAGTC	6 cut(s)	119, 125, 150, 151, 728, 743
PmaCI	CACGTG	1 cut(s)	660
PmlI	CACGTG	1 cut(s)	660
PpsI	GAGTC	6 cut(s)	119, 125, 150, 151, 728, 743
Ppu21I	YACGTR	1 cut(s)	660
Psp124BI	GAGCTC	2 cut(s)	258, 703
Psp1406I	AACGTT	1 cut(s)	461
PspCI	CACGTG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	834
PspN4I	GGNNCC	5 cut(s)	430, 651, 652, 799, 960
PspOMI	GGGCCC	1 cut(s)	649
PspPI	GGNCC	4 cut(s)	88, 588, 649, 650
PsuI	RGATCY	3 cut(s)	428, 678, 958
PsyI	GACNNNGTC	2 cut(s)	344, 486
RsaI	GTAC	2 cut(s)	356, 776
RsaNI	GTAC	2 cut(s)	355, 775
RseI	CAYNNNNRTG	2 cut(s)	608, 644
SacI	GAGCTC	2 cut(s)	258, 703
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	6 cut(s)	91, 177, 229, 300, 825, 991
Sau3AI	GATC	4 cut(s)	428, 579, 678, 958
Sau96I	GGNCC	4 cut(s)	88, 588, 649, 650
SchI	GAGTC	6 cut(s)	120, 125, 150, 152, 729, 744
SduI	GDGCHC	4 cut(s)	195, 258, 653, 703
SfaNI	GCATC	2 cut(s)	345, 769
SfcI	CTRYAG	1 cut(s)	667
SmiMI	CAYNNNNRTG	2 cut(s)	608, 644
Sse9I	AATT	3 cut(s)	18, 819, 1004
SstI	GAGCTC	2 cut(s)	258, 703
StyI	CCWWGG	2 cut(s)	135, 609
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	5 cut(s)	210, 246, 464, 627, 662
TaqI	TCGA	3 cut(s)	117, 339, 561
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	18, 819, 1004
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	5 cut(s)	93, 179, 302, 827, 993
TfiI	GAWTC	4 cut(s)	62, 183, 366, 384
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TscAI	CASTG	2 cut(s)	200, 748
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	228
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	436
TspGWI	ACGGA	3 cut(s)	16, 272, 421
TspRI	CASTG	2 cut(s)	200, 748
Tth111I	GACNNNGTC	2 cut(s)	344, 486
Van91I	CCANNNNNTGG	1 cut(s)	660
XmiI	GTMKAC	2 cut(s)	310, 666
ZraI	GACGTC	2 cut(s)	208, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.