Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000565.1

Orthogroup ID

OG0000765

Physical Location & Seq

Genomic Coordinates Forward (+)

224764 .. 228741

Gene Structure 3978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000565.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

atggctgaccggagagctgaagaaaatgtcgtctccggccaacccatccagaaaaccattgcggatttcgatcccgctcccaaacccaagagaaacaagtacgcttttgcttgtgctatgttggcttccatgacttctatcctactcggttatgatattggggtaatgagtggagcggtgatctacatcaaagacgacctccatgtctccgacgtgcagatcgaagttctagtcggaattctgaatctctactccctcatcggctccgccgccgccggcaggacgtccgactggattggacgtcggtataccatagtcctcgccggagccatcttcttcgccggagctcttctcatgggcttcgccaccaactattccttcctcatgtttgggaggtttgttgccggaatcggcgttggttatgccctcatgattgctcctgtctacaccgccgaagtttctccggcgtcgtctcgtggtttcctcacgtctttcccagaggtgtttatcaatgccggaatcttattggggtacatatccaactgggctttctccaagcttgcacttaacctaggctggcgtctcatgctcggcgtcggtgcaattccctccgtcttcctcgccctcggcgtcttagccatgccggaatcccctcgctggctcgtcatgcagggccgcctcggcgacgccaagagagtcctcgaccgaacttcagactccatggaagagtccaaactccgactcgctgacatcaaagaagccgccggaatccccgagcactgcaacgaggacgtcgttcaagtcccaaaacgcagccacggtgaggacgtctggaaagagctcatactccgcccgacccccgccgtccgtcacattctcatcgccgccgtcggtatacacttcttccaacaagcctcaggcatcgacgccgtcgttttgtacagcccgagaatcttcacaaaggccggaatcaagaacaaggacaaactcctcctcgccaccatagccgtcggatccgtcaagacagccttcatcctcgtcgcaacgtttcttctggacaggataggacgccgtcctctgcttcttaccagcgtagcagggatgatagcctcactcggctgtctcggtttcagcctcaccatcatcgaccacagcgacgagaagatcatgtgggccattgttctctccatcaccatggtcttattctacgtcgcgttcttctccatcggaatgggccccatcacgtgggtctacagctccgagatcttcccgttaaagctacgagctcaggggtgtagtattggagtcgccgtcaacagagtcgtcagtgggatactctcaatgacttttatatccctgtacgatgccataactattggcggagccttctttcttttcgccggaattgcggcggttggctgggtgttcttctatacaatgctaccggagacacaggggagaacccttgaagatatggaagtcctttttgggaagttccacaagtggaaagaggccaatgccctgctcaaaaataagcaggtggatcctaatagaaatggaaacgacaccgccagcggcgccttcaaatcccagaaaccaccgccgcccaccttgaagatatcaactccaggagtccagaaccggcggccccgtccccagaaccggccaccggaaatatctttaccctccctgcccggttcgaagccttcctcccggccaactgctaccaaacttcactggaacctgcaaccagaccccagatcaccggatccgaaaaatctccaccggaaccggcctacaacggtccgaaccggccaccagaaaggaccactaccgaaccagcagaaagaagaaaaaaaaaaaggagaagaactcttgcagcccaggcccgtctgcagcccaagcctgcctgcttgcgaacccaagccgcatagccgccaagccgagccgccaagcccaagccgccaagccgccaagccttctgccacgtcagcaagccacgcaggcatccagtcagcagccacgtcagcgttggactgccacgtcagcactcggtcaaccctccggtcaacacttttccggccactttctgcagttttccggccactttttcaggccagctacagtacttttcggtatctacagtacttccggccgctacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

721

Amino Acids

78.78

Weight (kDa)

9.77

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16120 AT2G16130 AT3G18830
fragaria_vesca	FvH4_2g08400 FvH4_2g08400 FvH4_2g08430 FvH4_2g08430 FvH4_2g08430
malus_domestica	MD05G1068600.v1.1 MD05G1068700.v1.1 MD05G1069100.v1.1 MD05G1069700.v1.1 MD10G1078900.v1.1 MD10G1079100.v1.1 MD10G1079200.v1.1 MD10G1079500.v1.1 MD10G1079600.v1.1 MD10G1079700.v1.1 MD10G1079800.v1.1 MD10G1079900.v1.1 MD10G1080000.v1.1 MD10G1080100.v1.1 MD10G1106100.v1.1 MD12G1026200.v1.1 MD17G1247200.v1.1
prunus_persica	Prupe.3G071100_v2.0.a1 Prupe.8G100700_v2.0.a1 Prupe.8G101000_v2.0.a1 Prupe.8G101200_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G105300_v2.0.a1 Prupe.8G105400_v2.0.a1 Prupe.8G105500_v2.0.a1 Prupe.8G105600_v2.0.a1
pyrus_communis	pycom04g19030 pycom04g19050 pycom04g19090 pycom04g19120 pycom05g05990 pycom05g06030 pycom10g06180 pycom10g06270 pycom10g06280 pycom10g06300 pycom10g06330 pycom10g06340 pycom12g02550 pycom17g26280
rosa_chinensis	RchiOBHm_Chr6g0263471 RchiOBHm_Chr6g0263621 RchiOBHm_Chr6g0263691
rosa_laevigata	RLG00000014328 RLG00000014330
rosa_multiflora	Rmu_co8086996.1_g000001 Rmu_co8446581.1_g000001 Rmu_sc0000565.1_g000052 Rmu_sc0010495.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431110 Rroxscaffold_7G00204150
rosa_rugosa	Rorug06G0005300 Rorug06G0005700
rosa_samantha	Rh6AG124800 Rh6BG120900 Rh6CG119100 Rh6DG107300 Rh6DG107500
rosa_wichuraiana	Rw0G005290 Rw0G005320 Rw6G010850 Rw6G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1528
AasI	GACNNNNNNGTC	2 cut(s)	203, 2042
AatII	GACGTC	4 cut(s)	287, 304, 795, 831
Acc36I	ACCTGC	2 cut(s)	1528, 1752
AccB1I	GGYRCC	1 cut(s)	1577
AccB7I	CCANNNNNTGG	1 cut(s)	1245
AccBSI	CCGCTC	2 cut(s)	77, 176
AccI	GTMKAC	4 cut(s)	308, 444, 895, 1251
AccII	CGCG	1 cut(s)	1214
AclI	AACGTT	1 cut(s)	1046
AclWI	GGATC	7 cut(s)	65, 1008, 1021, 1538, 1551, 1763, 1776
AcoI	YGGCCR	7 cut(s)	37, 1664, 1715, 1813, 2081, 2102, 2153
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	2 cut(s)	39, 696
AcvI	CACGTG	1 cut(s)	1245
AfaI	GTAC	6 cut(s)	101, 533, 941, 1361, 2128, 2147
AfiI	CCNNNNNNNGG	6 cut(s)	279, 657, 823, 1245, 1662, 1669
AgsI	TTSAA	4 cut(s)	800, 1469, 1585, 1615
AjiI	CACGTC	5 cut(s)	214, 489, 1989, 2025, 2044
AjnI	CCWGG	2 cut(s)	1627, 1883
AjuI	GAANNNNNNNTTGG	6 cut(s)	362, 394, 533, 565, 1470, 1502
AluBI	AGCT	8 cut(s)	17, 347, 559, 841, 1257, 1279, 1286, 2121
AluI	AGCT	8 cut(s)	17, 347, 559, 841, 1257, 1279, 1286, 2121
Alw21I	GWGCWC	4 cut(s)	349, 780, 843, 1288
Alw26I	GTCTC	6 cut(s)	37, 211, 477, 587, 1127, 1442
AlwI	GGATC	7 cut(s)	65, 1008, 1021, 1538, 1551, 1763, 1776
Ama87I	CYCGRG	2 cut(s)	773, 946
ApaI	GGGCCC	1 cut(s)	1238
ApeKI	GCWGC	4 cut(s)	813, 1879, 1896, 2018
ApoI	RAATTY	1 cut(s)	237
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspA2I	CCTAGG	1 cut(s)	571
AspLEI	GCGC	1 cut(s)	1580
AspS9I	GGNCC	8 cut(s)	673, 1173, 1234, 1235, 1647, 1804, 1826, 1887
AsuC2I	CCSGG	2 cut(s)	1695, 1714
AsuHPI	GGTGA	5 cut(s)	190, 833, 1129, 1183, 1755
AsuII	TTCGAA	1 cut(s)	1700
AvaI	CYCGRG	2 cut(s)	773, 946
AvaII	GGWCC	2 cut(s)	1804, 1826
AvrII	CCTAGG	1 cut(s)	571
AxyI	CCTNAGG	1 cut(s)	916
BaeGI	GKGCMC	1 cut(s)	1238
BamHI	GGATCC	3 cut(s)	1013, 1543, 1768
BanI	GGYRCC	1 cut(s)	1577
BanII	GRGCYC	4 cut(s)	349, 843, 1238, 1288
BauI	CACGAG	1 cut(s)	474
BbrPI	CACGTG	1 cut(s)	1245
BbsI	GAAGAC	1 cut(s)	607
Bbv12I	GWGCWC	4 cut(s)	349, 780, 843, 1288
BbvI	GCAGC	4 cut(s)	825, 1891, 1908, 2030
BccI	CCATC	6 cut(s)	53, 338, 1148, 1196, 1232, 1247
BceAI	ACGGC	6 cut(s)	848, 872, 914, 992, 1056, 1295
BciT130I	CCWGG	2 cut(s)	1629, 1885
BciVI	GTATCC	1 cut(s)	1326
BcnI	CCSGG	2 cut(s)	1695, 1714
BcoDI	GTCTC	6 cut(s)	37, 211, 477, 587, 1127, 1442
BfaI	CTAG	2 cut(s)	230, 572
BfmI	CTRYAG	6 cut(s)	1252, 1894, 2091, 2122, 2141, 2159
BfoI	RGCGCY	1 cut(s)	1581
BfuAI	ACCTGC	2 cut(s)	1528, 1752
BfuI	GTATCC	1 cut(s)	1326
BglI	GCCNNNNNGGC	2 cut(s)	681, 2004
BglII	AGATCT	1 cut(s)	1263
BlnI	CCTAGG	1 cut(s)	571
BmcAI	AGTACT	2 cut(s)	2128, 2147
Bme1390I	CCNGG	4 cut(s)	1629, 1695, 1714, 1885
Bme18I	GGWCC	2 cut(s)	1804, 1826
BmeT110I	CYCGRG	2 cut(s)	773, 946
BmgBI	CACGTC	5 cut(s)	214, 489, 1989, 2025, 2044
BmgT120I	GGNCC	8 cut(s)	673, 1173, 1234, 1235, 1647, 1804, 1826, 1887
BmrFI	CCNGG	4 cut(s)	1629, 1695, 1714, 1885
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	3 cut(s)	930, 1354, 2016
BmuI	ACTGGG	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	607
BplI	GAGNNNNNCTC	4 cut(s)	336, 368, 1857, 1889
BpmI	CTGGAG	1 cut(s)	1611
Bpu10I	CCTNAGC	1 cut(s)	1287
Bpu14I	TTCGAA	1 cut(s)	1700
BpuMI	CCSGG	2 cut(s)	1695, 1714
BsaAI	YACGTR	1 cut(s)	1245
BsaBI	GATNNNNATC	2 cut(s)	69, 185
BsaJI	CCNNGG	7 cut(s)	571, 625, 679, 720, 817, 1194, 1883
BsaWI	WCCGGW	6 cut(s)	9, 1444, 1669, 1765, 1785, 2064
BsaXI	ACNNNNNCTCC	2 cut(s)	1296, 1326
Bsc4I	CCNNNNNNNGG	6 cut(s)	279, 657, 823, 1245, 1662, 1669
Bse118I	RCCGGY	5 cut(s)	275, 1641, 1662, 1791, 1811
Bse1I	ACTGG	4 cut(s)	296, 548, 1742, 2011
Bse21I	CCTNAGG	1 cut(s)	916
Bse3DI	GCAATG	1 cut(s)	57
Bse8I	GATNNNNATC	2 cut(s)	69, 185
BseBI	CCWGG	2 cut(s)	1629, 1885
BseDI	CCNNGG	7 cut(s)	571, 625, 679, 720, 817, 1194, 1883
BseGI	GGATG	4 cut(s)	45, 1032, 1107, 2007
BseJI	GATNNNNATC	2 cut(s)	69, 185
BseLI	CCNNNNNNNGG	6 cut(s)	279, 657, 823, 1245, 1662, 1669
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	930, 1301
BseNI	ACTGG	4 cut(s)	296, 548, 1742, 2011
BseRI	GAGGAG	2 cut(s)	980, 983
BseSI	GKGCMC	1 cut(s)	1238
BseX3I	CGGCCG	1 cut(s)	2153
BseXI	GCAGC	4 cut(s)	825, 1891, 1908, 2030
BseYI	CCCAGC	1 cut(s)	1419
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	1214
Bsh1285I	CGRYCG	2 cut(s)	706, 2156
BshNI	GGYRCC	1 cut(s)	1577
BsiEI	CGRYCG	2 cut(s)	706, 2156
BsiHKAI	GWGCWC	4 cut(s)	349, 780, 843, 1288
BsiHKCI	CYCGRG	2 cut(s)	773, 946
BslFI	GGGAC	2 cut(s)	788, 1638
BslI	CCNNNNNNNGG	6 cut(s)	279, 657, 823, 1245, 1662, 1669
BsmAI	GTCTC	6 cut(s)	37, 211, 477, 587, 1127, 1442
BsmBI	CGTCTC	3 cut(s)	37, 477, 587
BsmFI	GGGAC	2 cut(s)	788, 1638
BsoBI	CYCGRG	2 cut(s)	773, 946
Bsp119I	TTCGAA	1 cut(s)	1700
Bsp120I	GGGCCC	1 cut(s)	1234
Bsp1286I	GDGCHC	5 cut(s)	349, 780, 843, 1238, 1288
Bsp1407I	TGTACA	1 cut(s)	939
Bsp143I	GATC	9 cut(s)	70, 180, 219, 1013, 1164, 1263, 1543, 1760, 1768
Bsp19I	CCATGG	2 cut(s)	720, 1194
BspCNI	CTCAG	2 cut(s)	929, 1300
BspFNI	CGCG	1 cut(s)	1214
BspHI	TCATGA	1 cut(s)	429
BspMAI	CTGCAG	2 cut(s)	1898, 2095
BspMI	ACCTGC	2 cut(s)	1528, 1752
BspPI	GGATC	7 cut(s)	65, 1008, 1021, 1538, 1551, 1763, 1776
BspQI	GCTCTTC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	1700
BspT107I	GGYRCC	1 cut(s)	1577
BsrBI	CCGCTC	2 cut(s)	77, 176
BsrDI	GCAATG	1 cut(s)	57
BsrFI	RCCGGY	5 cut(s)	275, 1641, 1662, 1791, 1811
BsrGI	TGTACA	1 cut(s)	939
BsrI	ACTGG	4 cut(s)	296, 548, 1742, 2011
BssAI	RCCGGY	5 cut(s)	275, 1641, 1662, 1791, 1811
BssECI	CCNNGG	7 cut(s)	571, 625, 679, 720, 817, 1194, 1883
BssMI	GATC	9 cut(s)	70, 180, 219, 1013, 1164, 1263, 1543, 1760, 1768
BssNAI	GTATAC	2 cut(s)	309, 896
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	3 cut(s)	571, 720, 1194
Bst1107I	GTATAC	2 cut(s)	309, 896
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	1629, 1885
Bst4CI	ACNGT	5 cut(s)	821, 1804, 2126, 2145, 2163
Bst6I	CTCTTC	2 cut(s)	354, 720
BstAUI	TGTACA	1 cut(s)	939
BstBAI	YACGTR	1 cut(s)	1245
BstBI	TTCGAA	1 cut(s)	1700
BstDEI	CTNAG	3 cut(s)	634, 916, 1287
BstDSI	CCRYGG	3 cut(s)	720, 817, 1194
BstF5I	GGATG	4 cut(s)	45, 1032, 1107, 2007
BstFNI	CGCG	1 cut(s)	1214
BstH2I	RGCGCY	1 cut(s)	1581
BstHHI	GCGC	1 cut(s)	1580
BstKTI	GATC	9 cut(s)	73, 183, 222, 1016, 1167, 1266, 1546, 1763, 1771
BstMAI	GTCTC	6 cut(s)	37, 211, 477, 587, 1127, 1442
BstMBI	GATC	9 cut(s)	70, 180, 219, 1013, 1164, 1263, 1543, 1760, 1768
BstMCI	CGRYCG	2 cut(s)	706, 2156
BstNI	CCWGG	2 cut(s)	1629, 1885
BstSCI	CCNGG	4 cut(s)	1627, 1693, 1712, 1883
BstSFI	CTRYAG	6 cut(s)	1252, 1894, 2091, 2122, 2141, 2159
BstSLI	GKGCMC	1 cut(s)	1238
BstUI	CGCG	1 cut(s)	1214
BstV1I	GCAGC	4 cut(s)	825, 1891, 1908, 2030
BstV2I	GAAGAC	1 cut(s)	607
BstX2I	RGATCY	4 cut(s)	1013, 1263, 1543, 1768
BstXI	CCANNNNNNTGG	2 cut(s)	1195, 1231
BstYI	RGATCY	4 cut(s)	1013, 1263, 1543, 1768
BstZ17I	GTATAC	2 cut(s)	309, 896
BstZI	CGGCCG	1 cut(s)	2153
Bsu36I	CCTNAGG	1 cut(s)	916
BsuI	GTATCC	1 cut(s)	1326
BtgI	CCRYGG	3 cut(s)	720, 817, 1194
BtgZI	GCGATG	1 cut(s)	865
BtrI	CACGTC	5 cut(s)	214, 489, 1989, 2025, 2044
BtsCI	GGATG	4 cut(s)	45, 1032, 1107, 2007
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	3 cut(s)	778, 1333, 1735
BveI	ACCTGC	2 cut(s)	1528, 1752
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	1580
Cfr10I	RCCGGY	5 cut(s)	275, 1641, 1662, 1791, 1811
Cfr13I	GGNCC	8 cut(s)	673, 1173, 1234, 1235, 1647, 1804, 1826, 1887
CpoI	CGGWCCG	1 cut(s)	1804
CseI	GACGC	7 cut(s)	456, 569, 583, 619, 695, 935, 1077
Csp6I	GTAC	6 cut(s)	100, 532, 940, 1360, 2127, 2146
CspI	CGGWCCG	1 cut(s)	1804
CviQI	GTAC	6 cut(s)	100, 532, 940, 1360, 2127, 2146
DdeI	CTNAG	3 cut(s)	634, 916, 1287
DinI	GGCGCC	1 cut(s)	1579
DpnI	GATC	9 cut(s)	72, 182, 221, 1015, 1166, 1265, 1545, 1762, 1770
DpnII	GATC	9 cut(s)	70, 180, 219, 1013, 1164, 1263, 1543, 1760, 1768
DrdI	GACNNNNNNGTC	2 cut(s)	203, 2042
DseDI	GACNNNNNNGTC	2 cut(s)	203, 2042
EaeI	YGGCCR	7 cut(s)	37, 1664, 1715, 1813, 2081, 2102, 2153
EagI	CGGCCG	1 cut(s)	2153
Eam1104I	CTCTTC	2 cut(s)	354, 720
EarI	CTCTTC	2 cut(s)	354, 720
EciI	GGCGGA	3 cut(s)	256, 839, 1395
Ecl136II	GAGCTC	3 cut(s)	347, 841, 1286
EclXI	CGGCCG	1 cut(s)	2153
Eco130I	CCWWGG	3 cut(s)	571, 720, 1194
Eco24I	GRGCYC	4 cut(s)	349, 843, 1238, 1288
Eco32I	GATATC	1 cut(s)	1620
Eco47I	GGWCC	2 cut(s)	1804, 1826
Eco52I	CGGCCG	1 cut(s)	2153
Eco53kI	GAGCTC	3 cut(s)	347, 841, 1286
Eco57I	CTGAAG	2 cut(s)	39, 696
Eco72I	CACGTG	1 cut(s)	1245
Eco81I	CCTNAGG	1 cut(s)	916
Eco88I	CYCGRG	2 cut(s)	773, 946
EcoICRI	GAGCTC	3 cut(s)	347, 841, 1286
EcoO109I	RGGNCCY	1 cut(s)	1235
EcoRI	GAATTC	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	1627, 1883
EcoRV	GATATC	1 cut(s)	1620
EcoT14I	CCWWGG	3 cut(s)	571, 720, 1194
EcoT38I	GRGCYC	4 cut(s)	349, 843, 1238, 1288
EgeI	GGCGCC	1 cut(s)	1579
EheI	GGCGCC	1 cut(s)	1579
ErhI	CCWWGG	3 cut(s)	571, 720, 1194
Esp3I	CGTCTC	3 cut(s)	37, 477, 587
FalI	AAGNNNNNCTT	2 cut(s)	1013, 1045
FaqI	GGGAC	2 cut(s)	788, 1638
FauI	CCCGC	2 cut(s)	82, 868
FblI	GTMKAC	4 cut(s)	308, 444, 895, 1251
FokI	GGATG	4 cut(s)	32, 1019, 1114, 1994
FriOI	GRGCYC	4 cut(s)	349, 843, 1238, 1288
FspBI	CTAG	2 cut(s)	230, 572
GlaI	GCGC	1 cut(s)	1579
GsaI	CCCAGC	1 cut(s)	1423
GsuI	CTGGAG	1 cut(s)	1611
HaeII	RGCGCY	1 cut(s)	1581
HgaI	GACGC	7 cut(s)	456, 569, 583, 619, 695, 935, 1077
HhaI	GCGC	1 cut(s)	1580
Hin6I	GCGC	1 cut(s)	1578
HinP1I	GCGC	1 cut(s)	1578
HincII	GTYRAC	3 cut(s)	1315, 2058, 2070
HindII	GTYRAC	3 cut(s)	1315, 2058, 2070
HindIII	AAGCTT	1 cut(s)	557
HphI	GGTGA	5 cut(s)	190, 833, 1129, 1183, 1755
Hpy166II	GTNNAC	7 cut(s)	309, 445, 896, 1252, 1315, 2058, 2070
Hpy188III	TCNNGA	7 cut(s)	49, 430, 832, 973, 1021, 1055, 1636
Hpy8I	GTNNAC	7 cut(s)	309, 445, 896, 1252, 1315, 2058, 2070
HpyAV	CCTTC	6 cut(s)	388, 1039, 1396, 1591, 1716, 1989
HpyCH4III	ACNGT	5 cut(s)	821, 1804, 2126, 2145, 2163
HpyCH4V	TGCA	9 cut(s)	217, 563, 602, 670, 783, 1747, 1879, 1896, 2093
HpyF3I	CTNAG	3 cut(s)	634, 916, 1287
HspAI	GCGC	1 cut(s)	1578
KasI	GGCGCC	1 cut(s)	1577
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	9 cut(s)	70, 180, 219, 1013, 1164, 1263, 1543, 1760, 1768
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	8 cut(s)	82, 173, 269, 326, 344, 442, 1262, 1382
Lsp1109I	GCAGC	4 cut(s)	825, 1891, 1908, 2030
LweI	GCATC	3 cut(s)	930, 1354, 2016
MaeI	CTAG	2 cut(s)	230, 572
MaeIII	GTNAC	1 cut(s)	869
MalI	GATC	9 cut(s)	72, 182, 221, 1015, 1166, 1265, 1545, 1762, 1770
MbiI	CCGCTC	2 cut(s)	77, 176
MboI	GATC	9 cut(s)	70, 180, 219, 1013, 1164, 1263, 1543, 1760, 1768
MflI	RGATCY	4 cut(s)	1013, 1263, 1543, 1768
MhlI	GDGCHC	5 cut(s)	349, 780, 843, 1238, 1288
MluCI	AATT	3 cut(s)	237, 603, 1404
Mly113I	GGCGCC	1 cut(s)	1578
MlyI	GAGTC	7 cut(s)	705, 710, 735, 737, 1314, 1329, 1641
MmeI	TCCRAC	8 cut(s)	214, 234, 312, 564, 763, 931, 991, 2013
MroNI	GCCGGC	1 cut(s)	275
MseI	TTAA	2 cut(s)	567, 1274
MslI	CAYNNNNRTG	2 cut(s)	1193, 1229
MspA1I	CMGCKG	1 cut(s)	1575
MspR9I	CCNGG	4 cut(s)	1629, 1695, 1714, 1885
MvaI	CCWGG	2 cut(s)	1629, 1885
MvnI	CGCG	1 cut(s)	1214
NaeI	GCCGGC	1 cut(s)	277
NarI	GGCGCC	1 cut(s)	1578
NciI	CCSGG	2 cut(s)	1695, 1714
NcoI	CCATGG	2 cut(s)	720, 1194
NdeII	GATC	9 cut(s)	70, 180, 219, 1013, 1164, 1263, 1543, 1760, 1768
NgoMIV	GCCGGC	1 cut(s)	275
NmeAIII	GCCGAG	5 cut(s)	570, 606, 660, 1095, 1969
NmuCI	GTSAC	1 cut(s)	869
NspV	TTCGAA	1 cut(s)	1700
PagI	TCATGA	1 cut(s)	429
PaqCI	CACCTGC	1 cut(s)	1528
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	6 cut(s)	219, 627, 792, 825, 930, 1152
PdiI	GCCGGC	1 cut(s)	277
PfeI	GAWTC	7 cut(s)	244, 408, 519, 647, 768, 951, 969
PflFI	GACNNNGTC	2 cut(s)	929, 1071
PflMI	CCANNNNNTGG	1 cut(s)	1245
PfoI	TCCNGGA	1 cut(s)	1627
PleI	GAGTC	7 cut(s)	704, 710, 735, 736, 1313, 1328, 1640
PluTI	GGCGCC	1 cut(s)	1581
PmaCI	CACGTG	1 cut(s)	1245
PmlI	CACGTG	1 cut(s)	1245
PpsI	GAGTC	7 cut(s)	704, 710, 735, 736, 1313, 1328, 1640
Ppu21I	YACGTR	1 cut(s)	1245
Psp124BI	GAGCTC	3 cut(s)	349, 843, 1288
Psp1406I	AACGTT	1 cut(s)	1046
Psp6I	CCWGG	2 cut(s)	1627, 1883
PspCI	CACGTG	1 cut(s)	1245
PspFI	CCCAGC	1 cut(s)	1419
PspGI	CCWGG	2 cut(s)	1627, 1883
PspOMI	GGGCCC	1 cut(s)	1234
PspPI	GGNCC	8 cut(s)	673, 1173, 1234, 1235, 1647, 1804, 1826, 1887
PstI	CTGCAG	2 cut(s)	1898, 2095
PsuI	RGATCY	4 cut(s)	1013, 1263, 1543, 1768
PsyI	GACNNNGTC	2 cut(s)	929, 1071
RsaI	GTAC	6 cut(s)	101, 533, 941, 1361, 2128, 2147
RsaNI	GTAC	6 cut(s)	100, 532, 940, 1360, 2127, 2146
RseI	CAYNNNNRTG	2 cut(s)	1193, 1229
Rsr2I	CGGWCCG	1 cut(s)	1804
RsrII	CGGWCCG	1 cut(s)	1804
SacI	GAGCTC	3 cut(s)	349, 843, 1288
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	567, 1274
Sau3AI	GATC	9 cut(s)	70, 180, 219, 1013, 1164, 1263, 1543, 1760, 1768
Sau96I	GGNCC	8 cut(s)	673, 1173, 1234, 1235, 1647, 1804, 1826, 1887
ScaI	AGTACT	2 cut(s)	2128, 2147
SchI	GAGTC	7 cut(s)	705, 710, 735, 737, 1314, 1329, 1641
ScrFI	CCNGG	4 cut(s)	1629, 1695, 1714, 1885
SduI	GDGCHC	5 cut(s)	349, 780, 843, 1238, 1288
SfaNI	GCATC	3 cut(s)	930, 1354, 2016
SfcI	CTRYAG	6 cut(s)	1252, 1894, 2091, 2122, 2141, 2159
SfoI	GGCGCC	1 cut(s)	1579
SfuI	TTCGAA	1 cut(s)	1700
SinI	GGWCC	2 cut(s)	1804, 1826
SmiMI	CAYNNNNRTG	2 cut(s)	1193, 1229
Sse9I	AATT	3 cut(s)	237, 603, 1404
SspDI	GGCGCC	1 cut(s)	1577
SspMI	CTAG	2 cut(s)	230, 572
SstI	GAGCTC	3 cut(s)	349, 843, 1288
StyD4I	CCNGG	4 cut(s)	1627, 1693, 1712, 1883
StyI	CCWWGG	3 cut(s)	571, 720, 1194
TaaI	ACNGT	5 cut(s)	821, 1804, 2126, 2145, 2163
TaqI	TCGA	6 cut(s)	69, 222, 702, 924, 1146, 1700
TaqII	GACCGA	2 cut(s)	720, 2043
TasI	AATT	3 cut(s)	237, 603, 1404
TatI	WGTACW	3 cut(s)	939, 2126, 2145
TfiI	GAWTC	7 cut(s)	244, 408, 519, 647, 768, 951, 969
Tru1I	TTAA	2 cut(s)	567, 1274
Tru9I	TTAA	2 cut(s)	567, 1274
TscAI	CASTG	3 cut(s)	785, 1333, 1742
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	4 cut(s)	813, 1879, 1896, 2018
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	1 cut(s)	1021
TspGWI	ACGGA	3 cut(s)	601, 857, 1006
TspRI	CASTG	3 cut(s)	785, 1333, 1742
Tth111I	GACNNNGTC	2 cut(s)	929, 1071
Van91I	CCANNNNNTGG	1 cut(s)	1245
VpaK11BI	GGWCC	2 cut(s)	1804, 1826
XapI	RAATTY	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2029
XmaJI	CCTAGG	1 cut(s)	571
XmiI	GTMKAC	4 cut(s)	308, 444, 895, 1251
XspI	CTAG	2 cut(s)	230, 572
ZraI	GACGTC	4 cut(s)	285, 302, 793, 829
ZrmI	AGTACT	2 cut(s)	2128, 2147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.