Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000765

Physical Location & Seq

Genomic Coordinates Forward (+)

682721 .. 683201

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0005300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCGCTGCTGAGACCCACCATAGCTTCCGGCAATGCCAACTTGGTCTCGAGCTTGATCAACGCCGGAGGAAATGTGAATCGAAAAGTTTCAAATTCCGGGTGTTTGTTGTCTCTGGCTGTTCTGAACAAAAATTTTGAAGCTGTGAAGATTCTTATAGCATGCAGCTGTAAAGTTGATAACTCGGTTTTGCACGACGCGGCGGCGATGAACAGGGTTGATTTGGTGGAGATTTTGTGCAAGAATTTCCCGGAAAACGTTGGTTTCGGGTTGGATGATAAGGATTATGGTGTTCTTTGTGGAGAGGAACTCATCCTGAGGAAGGGACTGTTATATTTTATTTATGGGATCAGGAAGGCTATTCAGAATTATATTTGGCTTGGCCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

130

Amino Acids

14.11

Weight (kDa)

8.29

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	10 - 82	1.7e-08	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16120 AT2G16130 AT3G18830
fragaria_vesca	FvH4_2g08400 FvH4_2g08400 FvH4_2g08430 FvH4_2g08430 FvH4_2g08430
malus_domestica	MD05G1068600.v1.1 MD05G1068700.v1.1 MD05G1069100.v1.1 MD05G1069700.v1.1 MD10G1078900.v1.1 MD10G1079100.v1.1 MD10G1079200.v1.1 MD10G1079500.v1.1 MD10G1079600.v1.1 MD10G1079700.v1.1 MD10G1079800.v1.1 MD10G1079900.v1.1 MD10G1080000.v1.1 MD10G1080100.v1.1 MD10G1106100.v1.1 MD12G1026200.v1.1 MD17G1247200.v1.1
prunus_persica	Prupe.3G071100_v2.0.a1 Prupe.8G100700_v2.0.a1 Prupe.8G101000_v2.0.a1 Prupe.8G101200_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G105300_v2.0.a1 Prupe.8G105400_v2.0.a1 Prupe.8G105500_v2.0.a1 Prupe.8G105600_v2.0.a1
pyrus_communis	pycom04g19030 pycom04g19050 pycom04g19090 pycom04g19120 pycom05g05990 pycom05g06030 pycom10g06180 pycom10g06270 pycom10g06280 pycom10g06300 pycom10g06330 pycom10g06340 pycom12g02550 pycom17g26280
rosa_chinensis	RchiOBHm_Chr6g0263471 RchiOBHm_Chr6g0263621 RchiOBHm_Chr6g0263691
rosa_laevigata	RLG00000014328 RLG00000014330
rosa_multiflora	Rmu_co8086996.1_g000001 Rmu_co8446581.1_g000001 Rmu_sc0000565.1_g000052 Rmu_sc0010495.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431110 Rroxscaffold_7G00204150
rosa_rugosa	Rorug06G0005300 Rorug06G0005700
rosa_samantha	Rh6AG124800 Rh6BG120900 Rh6CG119100 Rh6DG107300 Rh6DG107500
rosa_wichuraiana	Rw0G005290 Rw0G005320 Rw6G010850 Rw6G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	200, 203
AclI	AACGTT	1 cut(s)	258
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	3 cut(s)	94, 133, 244
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	93, 140
AluBI	AGCT	4 cut(s)	26, 54, 143, 168
AluI	AGCT	4 cut(s)	26, 54, 143, 168
Alw26I	GTCTC	3 cut(s)	7, 52, 117
AlwI	GGATC	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	7, 165
ApoI	RAATTY	3 cut(s)	94, 133, 244
Asp700I	GAANNNNTTC	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	2 cut(s)	100, 251
AvaI	CYCGRG	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	2 cut(s)	100, 251
BcoDI	GTCTC	3 cut(s)	7, 52, 117
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	4 cut(s)	8, 166, 201, 204
BlsI	GCNGC	4 cut(s)	9, 167, 202, 205
Bme1390I	CCNGG	2 cut(s)	100, 251
BmeT110I	CYCGRG	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	100, 251
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
BpuMI	CCSGG	2 cut(s)	100, 251
BsaI	GGTCTC	2 cut(s)	7, 52
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse21I	CCTNAGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	40
BseGI	GGATG	2 cut(s)	280, 312
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	4 cut(s)	30, 66, 99, 251
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	3 cut(s)	7, 52, 117
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	2 cut(s)	7, 52
BsoBI	CYCGRG	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	57, 348
BspACI	CCGC	2 cut(s)	200, 203
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	200
BspPI	GGATC	1 cut(s)	356
BspTNI	GGTCTC	2 cut(s)	7, 52
BsrDI	GCAATG	1 cut(s)	40
BssMI	GATC	2 cut(s)	57, 348
Bst4CI	ACNGT	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	2 cut(s)	11, 317
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	280, 312
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	60, 351
BstMAI	GTCTC	3 cut(s)	7, 52, 117
BstMBI	GATC	2 cut(s)	57, 348
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	98, 249
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	384
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	280, 312
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	206
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	8 cut(s)	26, 54, 119, 143, 168, 359, 379, 384
CviKI_1	RGCY	8 cut(s)	26, 54, 119, 143, 168, 359, 379, 384
DdeI	CTNAG	2 cut(s)	11, 317
DpnI	GATC	2 cut(s)	59, 350
DpnII	GATC	2 cut(s)	57, 348
Eco31I	GGTCTC	2 cut(s)	7, 52
Eco81I	CCTNAGG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	165
FaiI	YATR	7 cut(s)	23, 158, 163, 288, 334, 345, 372
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	8, 166, 201, 204
FokI	GGATG	2 cut(s)	287, 299
Fsp4HI	GCNGC	4 cut(s)	8, 166, 201, 204
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	8, 166, 201, 204
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	4 cut(s)	30, 66, 99, 251
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	79, 151
HpaII	CCGG	4 cut(s)	30, 66, 99, 251
Hpy188I	TCNGA	2 cut(s)	126, 366
Hpy188III	TCNNGA	3 cut(s)	49, 316, 352
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	316, 349
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	165, 193, 240
HpyF3I	CTNAG	2 cut(s)	11, 317
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	57, 348
LpnPI	CCDG	8 cut(s)	43, 79, 101, 112, 199, 264, 329, 337
Lsp1109I	GCAGC	1 cut(s)	177
MaeII	ACGT	1 cut(s)	258
MalI	GATC	2 cut(s)	59, 350
MboI	GATC	2 cut(s)	57, 348
MboII	GAAGA	1 cut(s)	160
MluCI	AATT	4 cut(s)	94, 133, 244, 367
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	62, 298, 312
MroXI	GAANNNNTTC	1 cut(s)	88
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	4 cut(s)	30, 66, 99, 251
MspR9I	CCNGG	2 cut(s)	100, 251
MvnI	CGCG	1 cut(s)	200
NciI	CCSGG	2 cut(s)	100, 251
NdeII	GATC	2 cut(s)	57, 348
NlaIII	CATG	1 cut(s)	165
NspI	RCATGY	1 cut(s)	165
PaeI	GCATGC	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	79, 151
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	9, 167, 202, 205
Psp1406I	AACGTT	1 cut(s)	258
PvuII	CAGCTG	1 cut(s)	168
SatI	GCNGC	4 cut(s)	8, 166, 201, 204
Sau3AI	GATC	2 cut(s)	57, 348
ScrFI	CCNGG	2 cut(s)	100, 251
SetI	ASST	5 cut(s)	28, 56, 145, 170, 261
Sfr274I	CTCGAG	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	4 cut(s)	94, 133, 244, 367
SsiI	CCGC	2 cut(s)	200, 203
StyD4I	CCNGG	2 cut(s)	98, 249
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	50, 82
TasI	AATT	4 cut(s)	94, 133, 244, 367
TauI	GCSGC	2 cut(s)	203, 206
TfiI	GAWTC	2 cut(s)	79, 151
TseI	GCWGC	2 cut(s)	7, 165
TspDTI	ATGAA	1 cut(s)	224
XagI	CCTNNNNNAGG	1 cut(s)	320
XapI	RAATTY	3 cut(s)	94, 133, 244
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.