Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8086996.1

Orthogroup ID

OG0000765

Physical Location & Seq

Genomic Coordinates Forward (+)

25 .. 589

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8086996.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 565 bp

atgccggaatcccctcgctggctggtcatgcagggccgcctcggcgacgccaagcaagtcctcaaccgaacctcagactccatggaagagtccaaactccgactcgccgacatcaaagaagccgctggaatccccgaacactgcaacgacgacgtcgttcaagtcccaaaacgcagccaaggcgaagacgtctggaaagggctcatcctccaccccacccccgccgtccgtcacattctcatcgccgccgtcggtatgcacttcttccaacaagcctccggcattgacgccgtcgttttatacagcccgagaatcttcaaaaaggccggaatcacgtccaagaacaaactcctcagcgccaccatagccgtcggatccgtcaagacagtcgtcatcctcgtcccaacgtttttcctggacaggataggacgtcgtcctttgcttctttgcagcgtagcagggatgatagcctcactcggctgtctcggtttcggcctcaccatcatcaaccacagcaacgaaaagatcatgtgggccattgtgctctgcatcaccatggtcttat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

188

Amino Acids

20.54

Weight (kDa)

9.35

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16120 AT2G16130 AT3G18830
fragaria_vesca	FvH4_2g08400 FvH4_2g08400 FvH4_2g08430 FvH4_2g08430 FvH4_2g08430
malus_domestica	MD05G1068600.v1.1 MD05G1068700.v1.1 MD05G1069100.v1.1 MD05G1069700.v1.1 MD10G1078900.v1.1 MD10G1079100.v1.1 MD10G1079200.v1.1 MD10G1079500.v1.1 MD10G1079600.v1.1 MD10G1079700.v1.1 MD10G1079800.v1.1 MD10G1079900.v1.1 MD10G1080000.v1.1 MD10G1080100.v1.1 MD10G1106100.v1.1 MD12G1026200.v1.1 MD17G1247200.v1.1
prunus_persica	Prupe.3G071100_v2.0.a1 Prupe.8G100700_v2.0.a1 Prupe.8G101000_v2.0.a1 Prupe.8G101200_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G105300_v2.0.a1 Prupe.8G105400_v2.0.a1 Prupe.8G105500_v2.0.a1 Prupe.8G105600_v2.0.a1
pyrus_communis	pycom04g19030 pycom04g19050 pycom04g19090 pycom04g19120 pycom05g05990 pycom05g06030 pycom10g06180 pycom10g06270 pycom10g06280 pycom10g06300 pycom10g06330 pycom10g06340 pycom12g02550 pycom17g26280
rosa_chinensis	RchiOBHm_Chr6g0263471 RchiOBHm_Chr6g0263621 RchiOBHm_Chr6g0263691
rosa_laevigata	RLG00000014328 RLG00000014330
rosa_multiflora	Rmu_co8086996.1_g000001 Rmu_co8446581.1_g000001 Rmu_sc0000565.1_g000052 Rmu_sc0010495.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431110 Rroxscaffold_7G00204150
rosa_rugosa	Rorug06G0005300 Rorug06G0005700
rosa_samantha	Rh6AG124800 Rh6BG120900 Rh6CG119100 Rh6DG107300 Rh6DG107500
rosa_wichuraiana	Rw0G005290 Rw0G005320 Rw6G010850 Rw6G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	156, 192, 433
AciI	CCGC	4 cut(s)	37, 123, 222, 246
AclI	AACGTT	1 cut(s)	407
AclWI	GGATC	2 cut(s)	369, 382
AcyI	GRCGYC	5 cut(s)	48, 153, 189, 288, 430
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	161, 319
AjiI	CACGTC	1 cut(s)	336
AjnI	CCWGG	1 cut(s)	414
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	2 cut(s)	369, 382
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	4 cut(s)	34, 324, 493, 534
ApeKI	GCWGC	2 cut(s)	174, 450
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	34, 534
AsuHPI	GGTGA	2 cut(s)	490, 544
AvaI	CYCGRG	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	546
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	186, 462
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	4 cut(s)	209, 233, 275, 353
BciT130I	CCWGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	488
BfoI	RGCGCY	1 cut(s)	360
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	5 cut(s)	37, 123, 175, 246, 451
BlsI	GCNGC	5 cut(s)	38, 124, 176, 247, 452
Bme1390I	CCNGG	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	307
BmgBI	CACGTC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	34, 534
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	558
BoxI	GACNNNNGTC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	353
BsaHI	GRCGYC	5 cut(s)	48, 153, 189, 288, 430
BsaJI	CCNNGG	4 cut(s)	40, 81, 178, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	4 cut(s)	40, 81, 178, 555
BseGI	GGATG	3 cut(s)	204, 393, 468
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	87, 367
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	186, 462
BshFI	GGCC	4 cut(s)	36, 326, 495, 536
BsiHKAI	GWGCWC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	3 cut(s)	5, 279, 327
BslFI	GGGAC	2 cut(s)	149, 386
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	2 cut(s)	149, 386
BsnI	GGCC	4 cut(s)	36, 326, 495, 536
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	204, 546
Bsp143I	GATC	2 cut(s)	374, 525
Bsp19I	CCATGG	2 cut(s)	81, 555
BspACI	CCGC	4 cut(s)	37, 123, 222, 246
BspANI	GGCC	4 cut(s)	36, 326, 495, 536
BspCNI	CTCAG	2 cut(s)	86, 366
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	369, 382
BssECI	CCNNGG	4 cut(s)	40, 81, 178, 555
BssMI	GATC	2 cut(s)	374, 525
BssNI	GRCGYC	5 cut(s)	48, 153, 189, 288, 430
BssT1I	CCWWGG	3 cut(s)	81, 178, 555
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	5 cut(s)	48, 153, 189, 288, 430
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	73, 353
BstDSI	CCRYGG	2 cut(s)	81, 555
BstF5I	GGATG	3 cut(s)	204, 393, 468
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	2 cut(s)	377, 528
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	2 cut(s)	374, 525
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 42, 180, 365
BstNI	CCWGG	1 cut(s)	416
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	186, 462
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	36, 326, 495, 536
BtgI	CCRYGG	2 cut(s)	81, 555
BtgZI	GCGATG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	336
BtsCI	GGATG	3 cut(s)	204, 393, 468
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	34, 534
CseI	GACGC	2 cut(s)	56, 296
CviAII	CATG	4 cut(s)	28, 82, 529, 556
DdeI	CTNAG	2 cut(s)	73, 353
DpnI	GATC	2 cut(s)	376, 527
DpnII	GATC	2 cut(s)	374, 525
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	3 cut(s)	81, 178, 555
Eco24I	GRGCYC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	3 cut(s)	81, 178, 555
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	3 cut(s)	81, 178, 555
FaeI	CATG	4 cut(s)	31, 85, 532, 559
FaiI	YATR	7 cut(s)	29, 83, 257, 301, 365, 530, 557
FaqI	GGGAC	2 cut(s)	149, 386
FatI	CATG	4 cut(s)	27, 81, 528, 555
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	5 cut(s)	37, 123, 175, 246, 451
FokI	GGATG	3 cut(s)	191, 380, 475
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	5 cut(s)	37, 123, 175, 246, 451
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	5 cut(s)	37, 123, 175, 246, 451
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	4 cut(s)	36, 326, 495, 536
HapII	CCGG	3 cut(s)	5, 279, 327
HgaI	GACGC	2 cut(s)	56, 296
HhaI	GCGC	1 cut(s)	359
Hin1I	GRCGYC	5 cut(s)	48, 153, 189, 288, 430
Hin1II	CATG	4 cut(s)	31, 85, 532, 559
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	7 cut(s)	8, 77, 89, 102, 129, 312, 330
HpaII	CCGG	3 cut(s)	5, 279, 327
HphI	GGTGA	2 cut(s)	490, 544
Hpy188I	TCNGA	3 cut(s)	76, 101, 374
Hpy188III	TCNNGA	2 cut(s)	193, 382
Hpy99I	CGWCG	8 cut(s)	50, 152, 155, 158, 254, 296, 374, 435
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	5 cut(s)	153, 189, 335, 407, 430
HpyCH4V	TGCA	5 cut(s)	31, 144, 259, 450, 549
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 42, 180, 365
HpyF3I	CTNAG	2 cut(s)	73, 353
HpySE526I	ACGT	5 cut(s)	153, 189, 335, 407, 430
Hsp92I	GRCGYC	5 cut(s)	48, 153, 189, 288, 430
Hsp92II	CATG	4 cut(s)	31, 85, 532, 559
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	374, 525
Lsp1109I	GCAGC	2 cut(s)	186, 462
LweI	GCATC	1 cut(s)	558
MaeII	ACGT	5 cut(s)	153, 189, 335, 407, 430
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	376, 527
MboI	GATC	2 cut(s)	374, 525
MboII	GAAGA	4 cut(s)	98, 197, 256, 307
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	2 cut(s)	204, 546
MlyI	GAGTC	3 cut(s)	71, 96, 98
MmeI	TCCRAC	3 cut(s)	124, 292, 352
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	3 cut(s)	5, 279, 327
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	28, 42, 180, 365
NcoI	CCATGG	2 cut(s)	81, 555
NdeII	GATC	2 cut(s)	374, 525
NlaIII	CATG	4 cut(s)	31, 85, 532, 559
NlaIV	GGNNCC	1 cut(s)	376
NmeAIII	GCCGAG	2 cut(s)	21, 456
NmuCI	GTSAC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 396
PfeI	GAWTC	4 cut(s)	8, 129, 312, 330
PflFI	GACNNNGTC	3 cut(s)	152, 290, 432
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	5 cut(s)	38, 124, 176, 247, 452
PleI	GAGTC	3 cut(s)	71, 96, 97
PpsI	GAGTC	3 cut(s)	71, 96, 97
PshAI	GACNNNNGTC	1 cut(s)	389
Psp1406I	AACGTT	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	34, 534
PsuI	RGATCY	1 cut(s)	374
PsyI	GACNNNGTC	3 cut(s)	152, 290, 432
RseI	CAYNNNNRTG	1 cut(s)	554
SatI	GCNGC	5 cut(s)	37, 123, 175, 246, 451
Sau3AI	GATC	2 cut(s)	374, 525
Sau96I	GGNCC	2 cut(s)	34, 534
SchI	GAGTC	3 cut(s)	71, 96, 98
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	2 cut(s)	204, 546
SetI	ASST	6 cut(s)	74, 156, 192, 338, 410, 433
SfaNI	GCATC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	554
SsiI	CCGC	4 cut(s)	37, 123, 222, 246
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	3 cut(s)	81, 178, 555
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	5 cut(s)	156, 192, 338, 410, 433
TauI	GCSGC	3 cut(s)	39, 125, 248
TfiI	GAWTC	4 cut(s)	8, 129, 312, 330
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	2 cut(s)	174, 450
Tsp45I	GTSAC	1 cut(s)	230
TspGWI	ACGGA	2 cut(s)	218, 367
TspRI	CASTG	1 cut(s)	146
Tth111I	GACNNNGTC	3 cut(s)	152, 290, 432
ZraI	GACGTC	3 cut(s)	154, 190, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.