RchiOBHm_Chr6g0263621
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
18510376 .. 18512389
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23642

Sequence Viewer

Length: 1098 bp
ATGACCGGACACTTCGTAGTTGTTTATCAATGTCGGAATCTTATTGGGGTACATATCCAACTGGGCCTTTTCCAAGCTCGCACTCTCATGCTTGGCGTCGGCGCCATCCCCTCCGTCTTCCTTGCCATTGGCGTCTTAGCCATGCCGGAATCCCCTCACTGGCTGGTCATGCAGGGCCGCCTCGGTGACGCCAAGCCAGTCCTCGACCGTACCTCAGACTCCATGGAAGAGTCCAAACTCCGACTCGCCGACATCAAAGAAGCCGCTGGAATCCCCGAACACTGCAACGACGACGTCGTTCAAGTCCCAATACGCAGCCATGGCGAAGACGTGTGGAAAGGGCTCATTCTCCATCCCACCCCCGCCGTCCGTCACATTCTCATCGCCGCCGTCGGTATGCACTTCTTCCAACAAGCCTCCGGCATTGACGCCGTCGTTTTATACAGCCCGAGAATCTTCAACAAGGCCGGAATCACGTCCAAGAACAAACTCCTCATCGCCACCATAGCCGTCGGATCCGTCAAGACAGTCTTCATCCTCGTCCCAACTTTTTTCCTGGACAGGATAGGACGTCGTCCTTTGCTTCTTTGCAGCGTAGCAGGGATGATAGCCTCACTCGGCTGTCTCGGTTTCGGCCTCACCATCATCGACCACAGCAACGAAAAGATCATGTGGGCCATTGTGCTCTGTATCACCATGGTCTTATTCTACGACGTCGCGTTCTTCTCCATTGGAATGGGCCCCATCACGTGGGTCTACAGCTCCGAGATCTTCCCGTTAAATCTACGAGCTCAGGGATGTAGTATTGGAGTCGCCGTCAACAGAGTCGCAAGTGGGATAGTCTCAATGACTTTTATATCCCTGTACAAGGCCATAACTATTGGCGGAGCCTTCTTTCTTTATGCTGGAATAGCGGCGGTTGGCTGGGTGTTCTTATGCACAATGCTACCGGAGACACAGGGGAGAACCCTTGAAGATATCGAAGTCCTCTTTGGGAAGTTCCACAAGTGGAAACAGGCCAATGCCCTGCTCAAGAATAAGCAGGTGGATCCTAATAGTAATGGAAACAACACCGCCAACGGTGGTCGGTTCAGTTAG

Protein Analysis

365

Amino Acids

39.7

Weight (kDa)

8.95

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 29 - 331 2.6e-64 Sugar (and other) transporter
MFS_1 PF07690 37 - 280 5.9e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1033
AatII GACGTC 3 cut(s) 297, 574, 717
Acc36I ACCTGC 1 cut(s) 1033
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 750
AccI GTMKAC 1 cut(s) 756
AccII CGCG 1 cut(s) 719
AciI CCGC 8 cut(s) 178, 264, 363, 387, 885, 914, 917, 1074
AclWI GGATC 4 cut(s) 510, 523, 1043, 1056
AcvI CACGTG 1 cut(s) 750
AcyI GRCGYC 8 cut(s) 96, 102, 132, 189, 294, 429, 571, 714
AfaI GTAC 3 cut(s) 51, 211, 866
AfiI CCNNNNNNNGG 3 cut(s) 159, 750, 868
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 3 cut(s) 302, 460, 974
AjiI CACGTC 2 cut(s) 331, 477
AjnI CCWGG 1 cut(s) 555
AjuI GAANNNNNNNTTGG 2 cut(s) 975, 1007
AluBI AGCT 3 cut(s) 77, 762, 791
AluI AGCT 3 cut(s) 77, 762, 791
Alw21I GWGCWC 2 cut(s) 687, 793
Alw26I GTCTC 3 cut(s) 629, 847, 947
AlwI GGATC 4 cut(s) 510, 523, 1043, 1056
Ama87I CYCGRG 1 cut(s) 448
AoxI GGCC 8 cut(s) 64, 175, 465, 634, 675, 739, 870, 1017
ApaI GGGCCC 1 cut(s) 743
ApeKI GCWGC 2 cut(s) 315, 591
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 5 cut(s) 64, 175, 675, 739, 740
AsuHPI GGTGA 3 cut(s) 197, 631, 685
AvaI CYCGRG 1 cut(s) 448
BaeGI GKGCMC 1 cut(s) 743
BamHI GGATCC 2 cut(s) 515, 1048
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 3 cut(s) 345, 743, 793
BbrPI CACGTG 1 cut(s) 750
BbsI GAAGAC 3 cut(s) 109, 333, 523
Bbv12I GWGCWC 2 cut(s) 687, 793
BbvI GCAGC 2 cut(s) 327, 603
BccI CCATC 4 cut(s) 113, 360, 650, 752
BceAI ACGGC 5 cut(s) 350, 374, 416, 494, 800
BciT130I CCWGG 1 cut(s) 557
BcoDI GTCTC 3 cut(s) 629, 847, 947
BfmI CTRYAG 1 cut(s) 757
BfoI RGCGCY 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 1033
BglII AGATCT 1 cut(s) 768
BisI GCNGC 6 cut(s) 178, 264, 316, 387, 592, 915
BlsI GCNGC 6 cut(s) 179, 265, 317, 388, 593, 916
Bme1390I CCNGG 1 cut(s) 557
BmeT110I CYCGRG 1 cut(s) 448
BmgBI CACGTC 2 cut(s) 331, 477
BmgT120I GGNCC 5 cut(s) 64, 175, 675, 739, 740
BmiI GGNNCC 6 cut(s) 103, 517, 741, 742, 889, 1050
BmrFI CCNGG 1 cut(s) 557
BmrI ACTGGG 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 3 cut(s) 109, 333, 523
Bpu10I CCTNAGC 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 1016
BsaAI YACGTR 1 cut(s) 750
BsaHI GRCGYC 8 cut(s) 96, 102, 132, 189, 294, 429, 571, 714
BsaJI CCNNGG 4 cut(s) 181, 222, 319, 696
BsaWI WCCGGW 2 cut(s) 5, 949
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 750, 868
Bse1I ACTGG 3 cut(s) 66, 164, 197
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 4 cut(s) 181, 222, 319, 696
BseGI GGATG 5 cut(s) 105, 352, 534, 609, 803
BseLI CCNNNNNNNGG 3 cut(s) 159, 750, 868
BseMII CTCAG 2 cut(s) 228, 806
BseNI ACTGG 3 cut(s) 66, 164, 197
BseRI GAGGAG 1 cut(s) 482
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 2 cut(s) 327, 603
BseYI CCCAGC 1 cut(s) 924
Bsh1236I CGCG 1 cut(s) 719
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 8 cut(s) 66, 177, 467, 636, 677, 741, 872, 1019
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 2 cut(s) 687, 793
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 5 cut(s) 6, 146, 420, 468, 950
BslFI GGGAC 2 cut(s) 290, 527
BslI CCNNNNNNNGG 3 cut(s) 159, 750, 868
BsmAI GTCTC 3 cut(s) 629, 847, 947
BsmFI GGGAC 2 cut(s) 290, 527
BsnI GGCC 8 cut(s) 66, 177, 467, 636, 677, 741, 872, 1019
BsoBI CYCGRG 1 cut(s) 448
Bsp120I GGGCCC 1 cut(s) 739
Bsp1286I GDGCHC 4 cut(s) 345, 687, 743, 793
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 4 cut(s) 515, 666, 768, 1048
Bsp19I CCATGG 3 cut(s) 222, 319, 696
BspACI CCGC 8 cut(s) 178, 264, 363, 387, 885, 914, 917, 1074
BspANI GGCC 8 cut(s) 66, 177, 467, 636, 677, 741, 872, 1019
BspCNI CTCAG 2 cut(s) 227, 805
BspFNI CGCG 1 cut(s) 719
BspLI GGNNCC 6 cut(s) 103, 517, 741, 742, 889, 1050
BspMI ACCTGC 1 cut(s) 1033
BspPI GGATC 4 cut(s) 510, 523, 1043, 1056
BspT107I GGYRCC 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 864
BsrI ACTGG 3 cut(s) 66, 164, 197
BssECI CCNNGG 4 cut(s) 181, 222, 319, 696
BssMI GATC 4 cut(s) 515, 666, 768, 1048
BssNI GRCGYC 8 cut(s) 96, 102, 132, 189, 294, 429, 571, 714
BssT1I CCWWGG 3 cut(s) 222, 319, 696
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 3 cut(s) 209, 529, 1082
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 8 cut(s) 96, 102, 132, 189, 294, 429, 571, 714
BstAUI TGTACA 1 cut(s) 864
BstBAI YACGTR 1 cut(s) 750
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 3 cut(s) 136, 214, 792
BstDSI CCRYGG 3 cut(s) 222, 319, 696
BstENI CCTNNNNNAGG 1 cut(s) 866
BstF5I GGATG 5 cut(s) 105, 352, 534, 609, 803
BstFNI CGCG 1 cut(s) 719
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 4 cut(s) 518, 669, 771, 1051
BstMAI GTCTC 3 cut(s) 629, 847, 947
BstMBI GATC 4 cut(s) 515, 666, 768, 1048
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 4 cut(s) 169, 321, 506, 911
BstNI CCWGG 1 cut(s) 557
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 757
BstSLI GKGCMC 1 cut(s) 743
BstUI CGCG 1 cut(s) 719
BstV1I GCAGC 2 cut(s) 327, 603
BstV2I GAAGAC 3 cut(s) 109, 333, 523
BstX2I RGATCY 3 cut(s) 515, 768, 1048
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 3 cut(s) 515, 768, 1048
BsuRI GGCC 8 cut(s) 66, 177, 467, 636, 677, 741, 872, 1019
BtgI CCRYGG 3 cut(s) 222, 319, 696
BtgZI GCGATG 2 cut(s) 367, 481
BtrI CACGTC 2 cut(s) 331, 477
BtsCI GGATG 5 cut(s) 105, 352, 534, 609, 803
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 157, 280
BveI ACCTGC 1 cut(s) 1033
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 5 cut(s) 64, 175, 675, 739, 740
CseI GACGC 4 cut(s) 85, 121, 197, 437
Csp6I GTAC 3 cut(s) 50, 210, 865
CviAII CATG 7 cut(s) 88, 142, 169, 223, 320, 670, 697
CviQI GTAC 3 cut(s) 50, 210, 865
DdeI CTNAG 3 cut(s) 136, 214, 792
DinI GGCGCC 1 cut(s) 103
DpnI GATC 4 cut(s) 517, 668, 770, 1050
DpnII GATC 4 cut(s) 515, 666, 768, 1048
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EciI GGCGGA 1 cut(s) 900
Ecl136II GAGCTC 1 cut(s) 791
Eco130I CCWWGG 3 cut(s) 222, 319, 696
Eco24I GRGCYC 3 cut(s) 345, 743, 793
Eco32I GATATC 1 cut(s) 979
Eco53kI GAGCTC 1 cut(s) 791
Eco72I CACGTG 1 cut(s) 750
Eco88I CYCGRG 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 791
EcoNI CCTNNNNNAGG 1 cut(s) 866
EcoO109I RGGNCCY 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 555
EcoRV GATATC 1 cut(s) 979
EcoT14I CCWWGG 3 cut(s) 222, 319, 696
EcoT38I GRGCYC 3 cut(s) 345, 743, 793
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 3 cut(s) 222, 319, 696
FaeI CATG 7 cut(s) 91, 145, 172, 226, 323, 673, 700
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 2 cut(s) 290, 527
FatI CATG 7 cut(s) 87, 141, 168, 222, 319, 669, 696
FauI CCCGC 1 cut(s) 370
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 6 cut(s) 178, 264, 316, 387, 592, 915
FokI GGATG 5 cut(s) 92, 339, 521, 616, 810
FriOI GRGCYC 3 cut(s) 345, 743, 793
Fsp4HI GCNGC 6 cut(s) 178, 264, 316, 387, 592, 915
GlaI GCGC 1 cut(s) 103
GluI GCNGC 6 cut(s) 178, 264, 316, 387, 592, 915
GsaI CCCAGC 1 cut(s) 928
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 8 cut(s) 66, 177, 467, 636, 677, 741, 872, 1019
HapII CCGG 5 cut(s) 6, 146, 420, 468, 950
HgaI GACGC 4 cut(s) 85, 121, 197, 437
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 8 cut(s) 96, 102, 132, 189, 294, 429, 571, 714
Hin1II CATG 7 cut(s) 91, 145, 172, 226, 323, 673, 700
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HpaII CCGG 5 cut(s) 6, 146, 420, 468, 950
HphI GGTGA 3 cut(s) 197, 631, 685
Hpy166II GTNNAC 2 cut(s) 757, 820
Hpy188I TCNGA 5 cut(s) 36, 217, 242, 515, 766
Hpy188III TCNNGA 2 cut(s) 523, 1033
Hpy8I GTNNAC 2 cut(s) 757, 820
HpyAV CCTTC 1 cut(s) 901
HpyCH4III ACNGT 3 cut(s) 209, 529, 1082
HpyCH4IV ACGT 6 cut(s) 294, 330, 476, 571, 714, 749
HpyCH4V TGCA 5 cut(s) 172, 285, 400, 591, 939
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 321, 506, 911
HpyF3I CTNAG 3 cut(s) 136, 214, 792
HpySE526I ACGT 6 cut(s) 294, 330, 476, 571, 714, 749
Hsp92I GRCGYC 8 cut(s) 96, 102, 132, 189, 294, 429, 571, 714
Hsp92II CATG 7 cut(s) 91, 145, 172, 226, 323, 673, 700
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Kzo9I GATC 4 cut(s) 515, 666, 768, 1048
LmnI GCTCC 2 cut(s) 767, 887
Lsp1109I GCAGC 2 cut(s) 327, 603
MaeII ACGT 6 cut(s) 294, 330, 476, 571, 714, 749
MaeIII GTNAC 2 cut(s) 185, 371
MalI GATC 4 cut(s) 517, 668, 770, 1050
MboI GATC 4 cut(s) 515, 666, 768, 1048
MboII GAAGA 9 cut(s) 109, 239, 338, 397, 448, 523, 715, 763, 986
MflI RGATCY 3 cut(s) 515, 768, 1048
MhlI GDGCHC 4 cut(s) 345, 687, 743, 793
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 5 cut(s) 212, 237, 239, 819, 834
MmeI TCCRAC 5 cut(s) 14, 82, 265, 433, 493
MseI TTAA 1 cut(s) 779
MslI CAYNNNNRTG 2 cut(s) 86, 734
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 5 cut(s) 6, 146, 420, 468, 950
MspR9I CCNGG 1 cut(s) 557
MvaI CCWGG 1 cut(s) 557
MvnI CGCG 1 cut(s) 719
MwoI GCNNNNNNNGC 4 cut(s) 169, 321, 506, 911
NarI GGCGCC 1 cut(s) 102
NcoI CCATGG 3 cut(s) 222, 319, 696
NdeII GATC 4 cut(s) 515, 666, 768, 1048
NlaIII CATG 7 cut(s) 91, 145, 172, 226, 323, 673, 700
NlaIV GGNNCC 6 cut(s) 103, 517, 741, 742, 889, 1050
NmeAIII GCCGAG 1 cut(s) 597
NmuCI GTSAC 2 cut(s) 185, 371
PaqCI CACCTGC 1 cut(s) 1033
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PfeI GAWTC 5 cut(s) 37, 149, 270, 453, 471
PflFI GACNNNGTC 3 cut(s) 293, 431, 573
PflMI CCANNNNNTGG 1 cut(s) 750
PfoI TCCNGGA 1 cut(s) 555
PkrI GCNGC 6 cut(s) 179, 265, 317, 388, 593, 916
PleI GAGTC 5 cut(s) 212, 237, 238, 818, 833
PluTI GGCGCC 1 cut(s) 105
PmaCI CACGTG 1 cut(s) 750
PmlI CACGTG 1 cut(s) 750
PpsI GAGTC 5 cut(s) 212, 237, 238, 818, 833
Ppu21I YACGTR 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 793
Psp6I CCWGG 1 cut(s) 555
PspCI CACGTG 1 cut(s) 750
PspFI CCCAGC 1 cut(s) 924
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 6 cut(s) 103, 517, 741, 742, 889, 1050
PspOMI GGGCCC 1 cut(s) 739
PspPI GGNCC 5 cut(s) 64, 175, 675, 739, 740
PsuI RGATCY 3 cut(s) 515, 768, 1048
PsyI GACNNNGTC 3 cut(s) 293, 431, 573
RsaI GTAC 3 cut(s) 51, 211, 866
RsaNI GTAC 3 cut(s) 50, 210, 865
RseI CAYNNNNRTG 2 cut(s) 86, 734
SacI GAGCTC 1 cut(s) 793
SaqAI TTAA 1 cut(s) 779
SatI GCNGC 6 cut(s) 178, 264, 316, 387, 592, 915
Sau3AI GATC 4 cut(s) 515, 666, 768, 1048
Sau96I GGNCC 5 cut(s) 64, 175, 675, 739, 740
SchI GAGTC 5 cut(s) 212, 237, 239, 819, 834
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 4 cut(s) 345, 687, 743, 793
SfcI CTRYAG 1 cut(s) 757
SfoI GGCGCC 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 86, 734
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
SsiI CCGC 8 cut(s) 178, 264, 363, 387, 885, 914, 917, 1074
SspDI GGCGCC 1 cut(s) 101
SstI GAGCTC 1 cut(s) 793
StyD4I CCNGG 1 cut(s) 555
StyI CCWWGG 3 cut(s) 222, 319, 696
TaaI ACNGT 3 cut(s) 209, 529, 1082
TaiI ACGT 6 cut(s) 297, 333, 479, 574, 717, 752
TaqI TCGA 3 cut(s) 204, 648, 981
TatI WGTACW 1 cut(s) 864
TauI GCSGC 4 cut(s) 180, 266, 389, 917
TfiI GAWTC 5 cut(s) 37, 149, 270, 453, 471
Tru1I TTAA 1 cut(s) 779
Tru9I TTAA 1 cut(s) 779
TscAI CASTG 2 cut(s) 164, 287
TseFI GTSAC 2 cut(s) 185, 371
TseI GCWGC 2 cut(s) 315, 591
Tsp45I GTSAC 2 cut(s) 185, 371
TspDTI ATGAA 1 cut(s) 523
TspGWI ACGGA 3 cut(s) 103, 359, 508
TspRI CASTG 2 cut(s) 164, 287
Tth111I GACNNNGTC 3 cut(s) 293, 431, 573
Van91I CCANNNNNTGG 1 cut(s) 750
XagI CCTNNNNNAGG 1 cut(s) 866
XmiI GTMKAC 1 cut(s) 756
ZraI GACGTC 3 cut(s) 295, 572, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.