RchiOBHm_Chr6g0263691
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
18570933 .. 18571943
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23649

Sequence Viewer

Length: 1011 bp
ATGCTTGGCGTCGGCGCCATCCCCTCCGTCTTCCTTGCCATTGGCGTCTTAGCCATGCCGGAATCCCCTCACTGGCTGGTCATGCAGGGCCGCCTCGGTGACGCCAAACCAGTCCTCGACCGTACCTCAGACTCCATGGAAGAGTCCAAACTCCGACTCGCCGACATCAAAGAAGCCGCTGGAATCCCCGAACACTGCAACGACGACGTCGTTCAAGTCCCAATACGCAGCCATGGCGAAGACGTGTGGAAAGGGCTCATCCTCCATCCCACCCCCGCCGTCCGTCACATTCTCATCGCCGCCGTCGGTATGCACTTCTTCCAACAAGCCTCCGGCATTGACGCCGTCGTTTTATACAGCCCGAGAATCTTCAACAAGGCCGGAATCACGTCCAAGAACAAACTCCTCATCGCCACCATAGCCGTCGGATCCGTCAAGACAGTCTTCATCCTCGTCCCAACTTTTTTCCTGGACAGGATAGGACGTCGTCCTTTGCTTCTTTGCAGCGTAGCAGGGATGATAGCCTCACTCGGCTGTCTCGGTTTCGGCCTCACCATCATCGACCACAGCAACGAAAAGATCATGTGGGCCATTGTGCTCTGTATCACCATGGTCTTATTCTACGACGTCGCGTTCTTCTCCATTGGAATGGGCCCCATCACGTGGGTCTACAGCTCCGAGATCTTCCCGTTAAATCTACGAGCTCAGGGATGTAGTATTGGAGTCGCCGTCAACAGAGTCGCAAGTGGGATAGTCTCAATGACTTTTATATCCCTGTACAAGGCCATAACTATTGGCGGAGCCTTCTTTCTTTATGCTGGAATAGCGGCGGTTGGCTGGGTGTTCTTATGCACAATGCTACCGGAGACACAGGGGAGAACCCTTGAAGATATCGAAGTCCTCTTTGGGAAGTTCCACAAGTGGAAACAGGCCAATCCCCTGCTCAAGAATAAGCAGGTGGATCCTAATAGTAATGGAAACAACACCGCCAACGGTGGTCGGTTCAGTTAA

Protein Analysis

336

Amino Acids

36.43

Weight (kDa)

8.71

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 1 - 302 5.3e-64 Sugar (and other) transporter
MFS_1 PF07690 17 - 251 5.7e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 946
AatII GACGTC 3 cut(s) 210, 487, 630
Acc36I ACCTGC 1 cut(s) 946
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 663
AccI GTMKAC 1 cut(s) 669
AccII CGCG 1 cut(s) 632
AciI CCGC 8 cut(s) 91, 177, 276, 300, 798, 827, 830, 987
AclWI GGATC 4 cut(s) 423, 436, 956, 969
AcvI CACGTG 1 cut(s) 663
AcyI GRCGYC 8 cut(s) 9, 15, 45, 102, 207, 342, 484, 627
AfaI GTAC 2 cut(s) 124, 779
AfiI CCNNNNNNNGG 3 cut(s) 72, 663, 781
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 3 cut(s) 215, 373, 887
AjiI CACGTC 2 cut(s) 244, 390
AjnI CCWGG 1 cut(s) 468
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
AluBI AGCT 2 cut(s) 675, 704
AluI AGCT 2 cut(s) 675, 704
Alw21I GWGCWC 2 cut(s) 600, 706
Alw26I GTCTC 3 cut(s) 542, 760, 860
AlwI GGATC 4 cut(s) 423, 436, 956, 969
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 7 cut(s) 88, 378, 547, 588, 652, 783, 930
ApaI GGGCCC 1 cut(s) 656
ApeKI GCWGC 2 cut(s) 228, 504
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 4 cut(s) 88, 588, 652, 653
AsuHPI GGTGA 3 cut(s) 110, 544, 598
AvaI CYCGRG 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 656
BamHI GGATCC 2 cut(s) 428, 961
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 3 cut(s) 258, 656, 706
BbrPI CACGTG 1 cut(s) 663
BbsI GAAGAC 3 cut(s) 22, 246, 436
Bbv12I GWGCWC 2 cut(s) 600, 706
BbvI GCAGC 2 cut(s) 240, 516
BccI CCATC 4 cut(s) 26, 273, 563, 665
BceAI ACGGC 5 cut(s) 263, 287, 329, 407, 713
BciT130I CCWGG 1 cut(s) 470
BcoDI GTCTC 3 cut(s) 542, 760, 860
BfmI CTRYAG 1 cut(s) 670
BfoI RGCGCY 1 cut(s) 18
BfuAI ACCTGC 1 cut(s) 946
BglII AGATCT 1 cut(s) 681
BisI GCNGC 6 cut(s) 91, 177, 229, 300, 505, 828
BlsI GCNGC 6 cut(s) 92, 178, 230, 301, 506, 829
Bme1390I CCNGG 1 cut(s) 470
BmeT110I CYCGRG 1 cut(s) 361
BmgBI CACGTC 2 cut(s) 244, 390
BmgT120I GGNCC 4 cut(s) 88, 588, 652, 653
BmiI GGNNCC 6 cut(s) 16, 430, 654, 655, 802, 963
BmrFI CCNGG 1 cut(s) 470
BpiI GAAGAC 3 cut(s) 22, 246, 436
Bpu10I CCTNAGC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 929
BsaAI YACGTR 1 cut(s) 663
BsaHI GRCGYC 8 cut(s) 9, 15, 45, 102, 207, 342, 484, 627
BsaJI CCNNGG 4 cut(s) 94, 135, 232, 609
BsaWI WCCGGW 1 cut(s) 862
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 663, 781
Bse1I ACTGG 2 cut(s) 77, 110
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 4 cut(s) 94, 135, 232, 609
BseGI GGATG 6 cut(s) 18, 258, 265, 447, 522, 716
BseLI CCNNNNNNNGG 3 cut(s) 72, 663, 781
BseMII CTCAG 2 cut(s) 141, 719
BseNI ACTGG 2 cut(s) 77, 110
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 2 cut(s) 240, 516
BseYI CCCAGC 1 cut(s) 837
Bsh1236I CGCG 1 cut(s) 632
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 7 cut(s) 90, 380, 549, 590, 654, 785, 932
BshNI GGYRCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 600, 706
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 4 cut(s) 59, 333, 381, 863
BslFI GGGAC 2 cut(s) 203, 440
BslI CCNNNNNNNGG 3 cut(s) 72, 663, 781
BsmAI GTCTC 3 cut(s) 542, 760, 860
BsmFI GGGAC 2 cut(s) 203, 440
BsnI GGCC 7 cut(s) 90, 380, 549, 590, 654, 785, 932
BsoBI CYCGRG 1 cut(s) 361
Bsp120I GGGCCC 1 cut(s) 652
Bsp1286I GDGCHC 4 cut(s) 258, 600, 656, 706
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 4 cut(s) 428, 579, 681, 961
Bsp19I CCATGG 3 cut(s) 135, 232, 609
BspACI CCGC 8 cut(s) 91, 177, 276, 300, 798, 827, 830, 987
BspANI GGCC 7 cut(s) 90, 380, 549, 590, 654, 785, 932
BspCNI CTCAG 2 cut(s) 140, 718
BspFNI CGCG 1 cut(s) 632
BspLI GGNNCC 6 cut(s) 16, 430, 654, 655, 802, 963
BspMI ACCTGC 1 cut(s) 946
BspPI GGATC 4 cut(s) 423, 436, 956, 969
BspT107I GGYRCC 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 2 cut(s) 77, 110
BssECI CCNNGG 4 cut(s) 94, 135, 232, 609
BssMI GATC 4 cut(s) 428, 579, 681, 961
BssNI GRCGYC 8 cut(s) 9, 15, 45, 102, 207, 342, 484, 627
BssT1I CCWWGG 3 cut(s) 135, 232, 609
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 3 cut(s) 122, 442, 995
Bst6I CTCTTC 1 cut(s) 135
BstACI GRCGYC 8 cut(s) 9, 15, 45, 102, 207, 342, 484, 627
BstAUI TGTACA 1 cut(s) 777
BstBAI YACGTR 1 cut(s) 663
BstDEI CTNAG 3 cut(s) 49, 127, 705
BstDSI CCRYGG 3 cut(s) 135, 232, 609
BstENI CCTNNNNNAGG 1 cut(s) 779
BstF5I GGATG 6 cut(s) 18, 258, 265, 447, 522, 716
BstFNI CGCG 1 cut(s) 632
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 4 cut(s) 431, 582, 684, 964
BstMAI GTCTC 3 cut(s) 542, 760, 860
BstMBI GATC 4 cut(s) 428, 579, 681, 961
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 4 cut(s) 82, 234, 419, 824
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 1 cut(s) 670
BstSLI GKGCMC 1 cut(s) 656
BstUI CGCG 1 cut(s) 632
BstV1I GCAGC 2 cut(s) 240, 516
BstV2I GAAGAC 3 cut(s) 22, 246, 436
BstX2I RGATCY 3 cut(s) 428, 681, 961
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 3 cut(s) 428, 681, 961
BsuRI GGCC 7 cut(s) 90, 380, 549, 590, 654, 785, 932
BtgI CCRYGG 3 cut(s) 135, 232, 609
BtgZI GCGATG 2 cut(s) 280, 394
BtrI CACGTC 2 cut(s) 244, 390
BtsCI GGATG 6 cut(s) 18, 258, 265, 447, 522, 716
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 70, 193
BveI ACCTGC 1 cut(s) 946
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 4 cut(s) 88, 588, 652, 653
CseI GACGC 3 cut(s) 34, 110, 350
Csp6I GTAC 2 cut(s) 123, 778
CviAII CATG 6 cut(s) 55, 82, 136, 233, 583, 610
CviQI GTAC 2 cut(s) 123, 778
DdeI CTNAG 3 cut(s) 49, 127, 705
DinI GGCGCC 1 cut(s) 16
DpnI GATC 4 cut(s) 430, 581, 683, 963
DpnII GATC 4 cut(s) 428, 579, 681, 961
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
EciI GGCGGA 1 cut(s) 813
Ecl136II GAGCTC 1 cut(s) 704
Eco130I CCWWGG 3 cut(s) 135, 232, 609
Eco24I GRGCYC 3 cut(s) 258, 656, 706
Eco32I GATATC 1 cut(s) 892
Eco53kI GAGCTC 1 cut(s) 704
Eco72I CACGTG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 704
EcoNI CCTNNNNNAGG 1 cut(s) 779
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 468
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 3 cut(s) 135, 232, 609
EcoT38I GRGCYC 3 cut(s) 258, 656, 706
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
ErhI CCWWGG 3 cut(s) 135, 232, 609
FaeI CATG 6 cut(s) 58, 85, 139, 236, 586, 613
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 2 cut(s) 203, 440
FatI CATG 6 cut(s) 54, 81, 135, 232, 582, 609
FauI CCCGC 1 cut(s) 283
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 6 cut(s) 91, 177, 229, 300, 505, 828
FokI GGATG 6 cut(s) 5, 245, 252, 434, 529, 723
FriOI GRGCYC 3 cut(s) 258, 656, 706
Fsp4HI GCNGC 6 cut(s) 91, 177, 229, 300, 505, 828
GlaI GCGC 1 cut(s) 16
GluI GCNGC 6 cut(s) 91, 177, 229, 300, 505, 828
GsaI CCCAGC 1 cut(s) 841
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 7 cut(s) 90, 380, 549, 590, 654, 785, 932
HapII CCGG 4 cut(s) 59, 333, 381, 863
HgaI GACGC 3 cut(s) 34, 110, 350
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 8 cut(s) 9, 15, 45, 102, 207, 342, 484, 627
Hin1II CATG 6 cut(s) 58, 85, 139, 236, 586, 613
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 9 cut(s) 62, 131, 143, 156, 183, 366, 384, 723, 738
HpaII CCGG 4 cut(s) 59, 333, 381, 863
HphI GGTGA 3 cut(s) 110, 544, 598
Hpy166II GTNNAC 2 cut(s) 670, 733
Hpy188I TCNGA 4 cut(s) 130, 155, 428, 679
Hpy188III TCNNGA 2 cut(s) 436, 946
Hpy8I GTNNAC 2 cut(s) 670, 733
HpyAV CCTTC 1 cut(s) 814
HpyCH4III ACNGT 3 cut(s) 122, 442, 995
HpyCH4IV ACGT 6 cut(s) 207, 243, 389, 484, 627, 662
HpyCH4V TGCA 5 cut(s) 85, 198, 313, 504, 852
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 234, 419, 824
HpyF3I CTNAG 3 cut(s) 49, 127, 705
HpySE526I ACGT 6 cut(s) 207, 243, 389, 484, 627, 662
Hsp92I GRCGYC 8 cut(s) 9, 15, 45, 102, 207, 342, 484, 627
Hsp92II CATG 6 cut(s) 58, 85, 139, 236, 586, 613
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
Kzo9I GATC 4 cut(s) 428, 579, 681, 961
LmnI GCTCC 2 cut(s) 680, 800
Lsp1109I GCAGC 2 cut(s) 240, 516
MaeII ACGT 6 cut(s) 207, 243, 389, 484, 627, 662
MaeIII GTNAC 2 cut(s) 98, 284
MalI GATC 4 cut(s) 430, 581, 683, 963
MboI GATC 4 cut(s) 428, 579, 681, 961
MboII GAAGA 9 cut(s) 22, 152, 251, 310, 361, 436, 628, 676, 899
MflI RGATCY 3 cut(s) 428, 681, 961
MhlI GDGCHC 4 cut(s) 258, 600, 656, 706
Mly113I GGCGCC 1 cut(s) 15
MlyI GAGTC 5 cut(s) 125, 150, 152, 732, 747
MmeI TCCRAC 3 cut(s) 178, 346, 406
MseI TTAA 2 cut(s) 692, 1009
MslI CAYNNNNRTG 1 cut(s) 647
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 4 cut(s) 59, 333, 381, 863
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 1 cut(s) 632
MwoI GCNNNNNNNGC 4 cut(s) 82, 234, 419, 824
NarI GGCGCC 1 cut(s) 15
NcoI CCATGG 3 cut(s) 135, 232, 609
NdeII GATC 4 cut(s) 428, 579, 681, 961
NlaIII CATG 6 cut(s) 58, 85, 139, 236, 586, 613
NlaIV GGNNCC 6 cut(s) 16, 430, 654, 655, 802, 963
NmeAIII GCCGAG 1 cut(s) 510
NmuCI GTSAC 2 cut(s) 98, 284
PaqCI CACCTGC 1 cut(s) 946
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 4 cut(s) 62, 183, 366, 384
PflFI GACNNNGTC 3 cut(s) 206, 344, 486
PflMI CCANNNNNTGG 1 cut(s) 663
PfoI TCCNGGA 1 cut(s) 468
PkrI GCNGC 6 cut(s) 92, 178, 230, 301, 506, 829
PleI GAGTC 5 cut(s) 125, 150, 151, 731, 746
PluTI GGCGCC 1 cut(s) 18
PmaCI CACGTG 1 cut(s) 663
PmlI CACGTG 1 cut(s) 663
PpsI GAGTC 5 cut(s) 125, 150, 151, 731, 746
Ppu21I YACGTR 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 706
Psp6I CCWGG 1 cut(s) 468
PspCI CACGTG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 837
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 6 cut(s) 16, 430, 654, 655, 802, 963
PspOMI GGGCCC 1 cut(s) 652
PspPI GGNCC 4 cut(s) 88, 588, 652, 653
PsuI RGATCY 3 cut(s) 428, 681, 961
PsyI GACNNNGTC 3 cut(s) 206, 344, 486
RsaI GTAC 2 cut(s) 124, 779
RsaNI GTAC 2 cut(s) 123, 778
RseI CAYNNNNRTG 1 cut(s) 647
SacI GAGCTC 1 cut(s) 706
SaqAI TTAA 2 cut(s) 692, 1009
SatI GCNGC 6 cut(s) 91, 177, 229, 300, 505, 828
Sau3AI GATC 4 cut(s) 428, 579, 681, 961
Sau96I GGNCC 4 cut(s) 88, 588, 652, 653
SchI GAGTC 5 cut(s) 125, 150, 152, 732, 747
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 4 cut(s) 258, 600, 656, 706
SfcI CTRYAG 1 cut(s) 670
SfoI GGCGCC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 944
SmoI CTYRAG 1 cut(s) 944
SsiI CCGC 8 cut(s) 91, 177, 276, 300, 798, 827, 830, 987
SspDI GGCGCC 1 cut(s) 14
SstI GAGCTC 1 cut(s) 706
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 3 cut(s) 135, 232, 609
TaaI ACNGT 3 cut(s) 122, 442, 995
TaiI ACGT 6 cut(s) 210, 246, 392, 487, 630, 665
TaqI TCGA 3 cut(s) 117, 561, 894
TatI WGTACW 1 cut(s) 777
TauI GCSGC 4 cut(s) 93, 179, 302, 830
TfiI GAWTC 4 cut(s) 62, 183, 366, 384
Tru1I TTAA 2 cut(s) 692, 1009
Tru9I TTAA 2 cut(s) 692, 1009
TscAI CASTG 2 cut(s) 77, 200
TseFI GTSAC 2 cut(s) 98, 284
TseI GCWGC 2 cut(s) 228, 504
Tsp45I GTSAC 2 cut(s) 98, 284
TspDTI ATGAA 1 cut(s) 436
TspGWI ACGGA 3 cut(s) 16, 272, 421
TspRI CASTG 2 cut(s) 77, 200
Tth111I GACNNNGTC 3 cut(s) 206, 344, 486
Van91I CCANNNNNTGG 1 cut(s) 663
XagI CCTNNNNNAGG 1 cut(s) 779
XmiI GTMKAC 1 cut(s) 669
ZraI GACGTC 3 cut(s) 208, 485, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.