Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000765

Physical Location & Seq

Genomic Coordinates Forward (+)

13833397 .. 13836996

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG107300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGCATGTGGTGGTTAAGTTTTTTGTGTTATCTACAGATATTGGTGTAATGAGTGGAGCGGTACTCTTCATCCAAGACGACCTTCATGTCTCCGACGTGCAGATCGAAGTTCTAGTCGGAATTCTGAATCTCTACTGCCTCATCGGCTCCGCCGCCGCCGGCAGGACGTCCGACTGGATTGGACGTCGGTATACCATAGTCCTCGCTGGAGCCATCTTCTTCGTCGGAGCTCTTCTCATGGGCTTTGCCACCAACTATTCCTTCCTCATGTTTGGGAGGTTTGTTGCTGGAATCGGCGTCGGTTATGCCCTCATGATTGCTCCTGTCTACACCGCCGAAGTCTCTCCGGCGTCGTCTCGTGGTTTCCTCACGTCTTTCCCTGAGGTGTTTATCAATGCCGGAATCTTATTGGGGTACATATCCAACTGGGCCTTTTCCAATCTCTCACTTAAACTAGGCTGGCGTCTCATGCTCGGCGTCGGTGCAATCCCCTCCGTCTTCCTTGCCCTCGGCGTCTTAGCCATGCCGGAATCCCCTCGCTGGCTCGTCATGCAAGGCCGCCTCGGCGACGCCAAGAAAGTCCTCGACCGAACCTCAGACTCCATGGAAGAGTCCAAACTCCGACTCGCCGACATCAAAGAAGCCGCCGGAATCCCCGAACACTGCAACGACGACGTCGTTCAAGTCCCAAAACGCAGCCACGGCGAAGACGTCTGGAAAGAGCTCATCCTCCGCCCCACCCCCGCCGTCCGTCACATTCTCATCGCCGCCGTCGGTATACACTTCTTCCAACAAGCCTCCGGCATCGACGCCGTCGTTTTGTACAGCCCAAGAATCTTCAAAAAGGCCGGAATCAAGTCCAAGAACAAACTCCTTATCGCCACCATAGCCGTCGGATCCGTTAAGACTCTCTTCATCCTCGTCGCAACGTTTCTCCTGGACAGGATAGGACGCCGTCCTTTGCTTCTTAGCAGCGTAGCAGGGATGATAGCCTCCCTCGGCTGTCTAGGTTTCGGCCTCACCATCATCGAACACAGCGACGAGAAGATCATGTGGGCCATTGTTCTCTGCATCAGCATGGTCTTATTCTACGTCGCGTTCTTCTCCATCGGAATGGGCCCCATCACTTGGGTCTACAGCTCCGAGATCTTCCCGTTAAAGCTACGAGCTCAGGGGTGTAGTATTGGAGTCGCCGTCAACAGAGTCGTCAGTGGGATACTCTCAATGACTTTTATATCCCTGTACGAGGCCATAAGTATTGGCGGAGCCTTCTTTCTTTTCGCCGGAATTGCGGCGGTTGGCTGGGTGTTCTTCTATACAATGCTACCGGAGACACAGGGGAGAACCCTTGAAGATATGGAAGTCCTTTTTGGGAAGTTCCACAAGTGGAAAGAATCCAATGCCCTGCTCAAAAATAAGCAGGTGGATCCTAATAGTAATGGAAACGACACCGCCAGTGGCGGTCAGGTTCAATTAGGAACAAAAGGGCAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

498

Amino Acids

54.04

Weight (kDa)

8.82

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	8 - 405	9.6e-33	Major Facilitator Superfamily
Sugar_tr	PF00083	31 - 457	9.6e-107	Sugar (and other) transporter
MFS_1	PF07690	304 - 454	4.6e-07	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16120 AT2G16130 AT3G18830
fragaria_vesca	FvH4_2g08400 FvH4_2g08400 FvH4_2g08430 FvH4_2g08430 FvH4_2g08430
malus_domestica	MD05G1068600.v1.1 MD05G1068700.v1.1 MD05G1069100.v1.1 MD05G1069700.v1.1 MD10G1078900.v1.1 MD10G1079100.v1.1 MD10G1079200.v1.1 MD10G1079500.v1.1 MD10G1079600.v1.1 MD10G1079700.v1.1 MD10G1079800.v1.1 MD10G1079900.v1.1 MD10G1080000.v1.1 MD10G1080100.v1.1 MD10G1106100.v1.1 MD12G1026200.v1.1 MD17G1247200.v1.1
prunus_persica	Prupe.3G071100_v2.0.a1 Prupe.8G100700_v2.0.a1 Prupe.8G101000_v2.0.a1 Prupe.8G101200_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G105300_v2.0.a1 Prupe.8G105400_v2.0.a1 Prupe.8G105500_v2.0.a1 Prupe.8G105600_v2.0.a1
pyrus_communis	pycom04g19030 pycom04g19050 pycom04g19090 pycom04g19120 pycom05g05990 pycom05g06030 pycom10g06180 pycom10g06270 pycom10g06280 pycom10g06300 pycom10g06330 pycom10g06340 pycom12g02550 pycom17g26280
rosa_chinensis	RchiOBHm_Chr6g0263471 RchiOBHm_Chr6g0263621 RchiOBHm_Chr6g0263691
rosa_laevigata	RLG00000014328 RLG00000014330
rosa_multiflora	Rmu_co8086996.1_g000001 Rmu_co8446581.1_g000001 Rmu_sc0000565.1_g000052 Rmu_sc0010495.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431110 Rroxscaffold_7G00204150
rosa_rugosa	Rorug06G0005300 Rorug06G0005700
rosa_samantha	Rh6AG124800 Rh6BG120900 Rh6CG119100 Rh6DG107300 Rh6DG107500
rosa_wichuraiana	Rw0G005290 Rw0G005320 Rw6G010850 Rw6G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1411
AasI	GACNNNNNNGTC	1 cut(s)	86
AatII	GACGTC	4 cut(s)	170, 187, 678, 714
Acc36I	ACCTGC	1 cut(s)	1411
AccB7I	CCANNNNNTGG	1 cut(s)	1128
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	4 cut(s)	191, 327, 778, 1134
AccII	CGCG	1 cut(s)	1097
AclI	AACGTT	1 cut(s)	929
AclWI	GGATC	4 cut(s)	891, 904, 1421, 1434
AcsI	RAATTY	1 cut(s)	120
AfaI	GTAC	4 cut(s)	63, 416, 824, 1244
AfiI	CCNNNNNNNGG	4 cut(s)	162, 540, 1128, 1246
AgsI	TTSAA	4 cut(s)	683, 841, 1352, 1472
AjiI	CACGTC	2 cut(s)	97, 372
AjnI	CCWGG	1 cut(s)	936
AjuI	GAANNNNNNNTTGG	6 cut(s)	66, 98, 245, 277, 1353, 1385
AluBI	AGCT	5 cut(s)	230, 724, 1140, 1162, 1169
AluI	AGCT	5 cut(s)	230, 724, 1140, 1162, 1169
Alw21I	GWGCWC	3 cut(s)	232, 726, 1171
Alw26I	GTCTC	5 cut(s)	94, 346, 360, 470, 1325
AlwI	GGATC	4 cut(s)	891, 904, 1421, 1434
AoxI	GGCC	7 cut(s)	429, 556, 846, 1015, 1056, 1117, 1248
ApaI	GGGCCC	1 cut(s)	1121
ApeKI	GCWGC	2 cut(s)	696, 972
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AspS9I	GGNCC	4 cut(s)	429, 1056, 1117, 1118
AsuHPI	GGTGA	1 cut(s)	1012
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	1 cut(s)	1121
BamHI	GGATCC	2 cut(s)	896, 1426
BanII	GRGCYC	4 cut(s)	232, 726, 1121, 1171
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	490, 714
Bbv12I	GWGCWC	3 cut(s)	232, 726, 1171
BbvI	GCAGC	2 cut(s)	708, 984
BccI	CCATC	4 cut(s)	221, 1031, 1115, 1130
BceAI	ACGGC	7 cut(s)	718, 731, 755, 797, 875, 939, 1178
BciT130I	CCWGG	1 cut(s)	938
BciVI	GTATCC	1 cut(s)	1209
BcoDI	GTCTC	5 cut(s)	94, 346, 360, 470, 1325
BfaI	CTAG	3 cut(s)	113, 455, 1007
BfmI	CTRYAG	2 cut(s)	33, 1135
BfuAI	ACCTGC	1 cut(s)	1411
BfuI	GTATCC	1 cut(s)	1209
BglI	GCCNNNNNGGC	2 cut(s)	144, 564
BglII	AGATCT	1 cut(s)	1146
BisI	GCNGC	8 cut(s)	153, 156, 559, 645, 697, 768, 973, 1293
BlsI	GCNGC	8 cut(s)	154, 157, 560, 646, 698, 769, 974, 1294
Bme1390I	CCNGG	1 cut(s)	938
BmgBI	CACGTC	2 cut(s)	97, 372
BmgT120I	GGNCC	4 cut(s)	429, 1056, 1117, 1118
BmiI	GGNNCC	7 cut(s)	148, 211, 898, 1119, 1120, 1267, 1428
BmrFI	CCNGG	1 cut(s)	938
BmrI	ACTGGG	1 cut(s)	436
BmsI	GCATC	2 cut(s)	813, 1080
BmuI	ACTGGG	1 cut(s)	436
BpiI	GAAGAC	2 cut(s)	490, 714
BplI	GAGNNNNNCTC	4 cut(s)	48, 80, 219, 251
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	1170
BsaJI	CCNNGG	5 cut(s)	508, 562, 603, 700, 997
BsaWI	WCCGGW	1 cut(s)	1327
BsaXI	ACNNNNNCTCC	2 cut(s)	1179, 1209
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 540, 1128, 1246
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	3 cut(s)	179, 431, 1455
Bse21I	CCTNAGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	938
BseDI	CCNNGG	5 cut(s)	508, 562, 603, 700, 997
BseGI	GGATG	4 cut(s)	69, 726, 915, 990
BseLI	CCNNNNNNNGG	4 cut(s)	162, 540, 1128, 1246
BseMII	CTCAG	3 cut(s)	372, 609, 1184
BseNI	ACTGG	3 cut(s)	179, 431, 1455
BseSI	GKGCMC	1 cut(s)	1121
BseXI	GCAGC	2 cut(s)	708, 984
BseYI	CCCAGC	1 cut(s)	1302
BsgI	GTGCAG	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	1097
Bsh1285I	CGRYCG	1 cut(s)	589
BshFI	GGCC	7 cut(s)	431, 558, 848, 1017, 1058, 1119, 1250
BsiEI	CGRYCG	1 cut(s)	589
BsiHKAI	GWGCWC	3 cut(s)	232, 726, 1171
BsiSI	CCGG	9 cut(s)	159, 347, 399, 527, 648, 801, 849, 1284, 1328
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	4 cut(s)	162, 540, 1128, 1246
BsmAI	GTCTC	5 cut(s)	94, 346, 360, 470, 1325
BsmBI	CGTCTC	2 cut(s)	360, 470
BsmFI	GGGAC	1 cut(s)	671
BsnI	GGCC	7 cut(s)	431, 558, 848, 1017, 1058, 1119, 1250
Bsp120I	GGGCCC	1 cut(s)	1117
Bsp1286I	GDGCHC	4 cut(s)	232, 726, 1121, 1171
Bsp1407I	TGTACA	1 cut(s)	822
Bsp143I	GATC	5 cut(s)	102, 896, 1047, 1146, 1426
Bsp19I	CCATGG	1 cut(s)	603
BspANI	GGCC	7 cut(s)	431, 558, 848, 1017, 1058, 1119, 1250
BspCNI	CTCAG	3 cut(s)	373, 608, 1183
BspFNI	CGCG	1 cut(s)	1097
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	7 cut(s)	148, 211, 898, 1119, 1120, 1267, 1428
BspMI	ACCTGC	1 cut(s)	1411
BspPI	GGATC	4 cut(s)	891, 904, 1421, 1434
BspQI	GCTCTTC	1 cut(s)	237
BsrBI	CCGCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	158
BsrGI	TGTACA	1 cut(s)	822
BsrI	ACTGG	3 cut(s)	179, 431, 1455
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	5 cut(s)	508, 562, 603, 700, 997
BssMI	GATC	5 cut(s)	102, 896, 1047, 1146, 1426
BssNAI	GTATAC	2 cut(s)	192, 779
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	603
Bst1107I	GTATAC	2 cut(s)	192, 779
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	938
Bst6I	CTCTTC	4 cut(s)	71, 237, 603, 917
BstAUI	TGTACA	1 cut(s)	822
BstC8I	GCNNGC	3 cut(s)	160, 461, 542
BstDEI	CTNAG	5 cut(s)	381, 517, 595, 968, 1170
BstDSI	CCRYGG	2 cut(s)	603, 700
BstENI	CCTNNNNNAGG	1 cut(s)	1244
BstF5I	GGATG	4 cut(s)	69, 726, 915, 990
BstFNI	CGCG	1 cut(s)	1097
BstKTI	GATC	5 cut(s)	105, 899, 1050, 1149, 1429
BstMAI	GTCTC	5 cut(s)	94, 346, 360, 470, 1325
BstMBI	GATC	5 cut(s)	102, 896, 1047, 1146, 1426
BstMCI	CGRYCG	1 cut(s)	589
BstMWI	GCNNNNNNNGC	7 cut(s)	144, 469, 550, 564, 702, 887, 1289
BstNI	CCWGG	1 cut(s)	938
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	936
BstSFI	CTRYAG	2 cut(s)	33, 1135
BstSLI	GKGCMC	1 cut(s)	1121
BstUI	CGCG	1 cut(s)	1097
BstV1I	GCAGC	2 cut(s)	708, 984
BstV2I	GAAGAC	2 cut(s)	490, 714
BstX2I	RGATCY	3 cut(s)	896, 1146, 1426
BstXI	CCANNNNNNTGG	1 cut(s)	1114
BstYI	RGATCY	3 cut(s)	896, 1146, 1426
BstZ17I	GTATAC	2 cut(s)	192, 779
Bsu36I	CCTNAGG	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	1209
BsuRI	GGCC	7 cut(s)	431, 558, 848, 1017, 1058, 1119, 1250
BtgI	CCRYGG	2 cut(s)	603, 700
BtgZI	GCGATG	1 cut(s)	748
BtrI	CACGTC	2 cut(s)	97, 372
BtsCI	GGATG	4 cut(s)	69, 726, 915, 990
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	3 cut(s)	661, 1216, 1462
BveI	ACCTGC	1 cut(s)	1411
Cac8I	GCNNGC	3 cut(s)	160, 461, 542
CciI	TCATGA	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	4 cut(s)	429, 1056, 1117, 1118
CseI	GACGC	8 cut(s)	286, 339, 452, 466, 502, 578, 818, 960
Csp6I	GTAC	4 cut(s)	62, 415, 823, 1243
CviQI	GTAC	4 cut(s)	62, 415, 823, 1243
DdeI	CTNAG	5 cut(s)	381, 517, 595, 968, 1170
DpnI	GATC	5 cut(s)	104, 898, 1049, 1148, 1428
DpnII	GATC	5 cut(s)	102, 896, 1047, 1146, 1426
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	4 cut(s)	71, 237, 603, 917
EarI	CTCTTC	4 cut(s)	71, 237, 603, 917
EciI	GGCGGA	3 cut(s)	139, 722, 1278
Ecl136II	GAGCTC	3 cut(s)	230, 724, 1169
Eco130I	CCWWGG	1 cut(s)	603
Eco24I	GRGCYC	4 cut(s)	232, 726, 1121, 1171
Eco53kI	GAGCTC	3 cut(s)	230, 724, 1169
Eco81I	CCTNAGG	1 cut(s)	381
EcoICRI	GAGCTC	3 cut(s)	230, 724, 1169
EcoNI	CCTNNNNNAGG	1 cut(s)	1244
EcoO109I	RGGNCCY	1 cut(s)	1118
EcoRI	GAATTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	603
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	4 cut(s)	232, 726, 1121, 1171
ErhI	CCWWGG	1 cut(s)	603
Esp3I	CGTCTC	2 cut(s)	360, 470
FalI	AAGNNNNNCTT	4 cut(s)	66, 98, 896, 928
FaqI	GGGAC	1 cut(s)	671
FauI	CCCGC	1 cut(s)	751
FblI	GTMKAC	4 cut(s)	191, 327, 778, 1134
Fnu4HI	GCNGC	8 cut(s)	153, 156, 559, 645, 697, 768, 973, 1293
FokI	GGATG	4 cut(s)	56, 713, 902, 997
FriOI	GRGCYC	4 cut(s)	232, 726, 1121, 1171
Fsp4HI	GCNGC	8 cut(s)	153, 156, 559, 645, 697, 768, 973, 1293
FspBI	CTAG	3 cut(s)	113, 455, 1007
GluI	GCNGC	8 cut(s)	153, 156, 559, 645, 697, 768, 973, 1293
GsaI	CCCAGC	1 cut(s)	1306
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	7 cut(s)	431, 558, 848, 1017, 1058, 1119, 1250
HapII	CCGG	9 cut(s)	159, 347, 399, 527, 648, 801, 849, 1284, 1328
HgaI	GACGC	8 cut(s)	286, 339, 452, 466, 502, 578, 818, 960
HincII	GTYRAC	1 cut(s)	1198
HindII	GTYRAC	1 cut(s)	1198
HpaII	CCGG	9 cut(s)	159, 347, 399, 527, 648, 801, 849, 1284, 1328
HphI	GGTGA	1 cut(s)	1012
Hpy166II	GTNNAC	5 cut(s)	192, 328, 779, 1135, 1198
Hpy188III	TCNNGA	2 cut(s)	313, 715
Hpy8I	GTNNAC	5 cut(s)	192, 328, 779, 1135, 1198
HpyAV	CCTTC	3 cut(s)	92, 271, 1279
HpyCH4IV	ACGT	8 cut(s)	96, 167, 184, 371, 675, 711, 929, 1092
HpyCH4V	TGCA	6 cut(s)	4, 100, 485, 553, 666, 1071
HpyF10VI	GCNNNNNNNGC	7 cut(s)	144, 469, 550, 564, 702, 887, 1289
HpyF3I	CTNAG	5 cut(s)	381, 517, 595, 968, 1170
HpySE526I	ACGT	8 cut(s)	96, 167, 184, 371, 675, 711, 929, 1092
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	5 cut(s)	102, 896, 1047, 1146, 1426
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	7 cut(s)	56, 152, 209, 227, 325, 1145, 1265
Lsp1109I	GCAGC	2 cut(s)	708, 984
LweI	GCATC	2 cut(s)	813, 1080
MaeI	CTAG	3 cut(s)	113, 455, 1007
MaeII	ACGT	8 cut(s)	96, 167, 184, 371, 675, 711, 929, 1092
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	5 cut(s)	104, 898, 1049, 1148, 1428
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	5 cut(s)	102, 896, 1047, 1146, 1426
MflI	RGATCY	3 cut(s)	896, 1146, 1426
MhlI	GDGCHC	4 cut(s)	232, 726, 1121, 1171
MluCI	AATT	3 cut(s)	120, 1287, 1472
MlyI	GAGTC	6 cut(s)	593, 618, 620, 901, 1197, 1212
MmeI	TCCRAC	8 cut(s)	97, 117, 195, 205, 447, 646, 814, 874
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	158
MseI	TTAA	4 cut(s)	15, 450, 903, 1157
MslI	CAYNNNNRTG	2 cut(s)	1076, 1112
MspI	CCGG	9 cut(s)	159, 347, 399, 527, 648, 801, 849, 1284, 1328
MspR9I	CCNGG	1 cut(s)	938
MvaI	CCWGG	1 cut(s)	938
MvnI	CGCG	1 cut(s)	1097
MwoI	GCNNNNNNNGC	7 cut(s)	144, 469, 550, 564, 702, 887, 1289
NaeI	GCCGGC	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	603
NdeII	GATC	5 cut(s)	102, 896, 1047, 1146, 1426
NgoMIV	GCCGGC	1 cut(s)	158
NlaIV	GGNNCC	7 cut(s)	148, 211, 898, 1119, 1120, 1267, 1428
NmeAIII	GCCGAG	4 cut(s)	453, 489, 543, 978
NmuCI	GTSAC	1 cut(s)	752
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PagI	TCATGA	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	1411
PciSI	GCTCTTC	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	5 cut(s)	102, 675, 708, 813, 1035
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	8 cut(s)	127, 291, 402, 530, 651, 834, 852, 1394
PflFI	GACNNNGTC	3 cut(s)	674, 812, 954
PflMI	CCANNNNNTGG	1 cut(s)	1128
PfoI	TCCNGGA	1 cut(s)	936
PkrI	GCNGC	8 cut(s)	154, 157, 560, 646, 698, 769, 974, 1294
PleI	GAGTC	6 cut(s)	593, 618, 619, 901, 1196, 1211
PpsI	GAGTC	6 cut(s)	593, 618, 619, 901, 1196, 1211
Psp124BI	GAGCTC	3 cut(s)	232, 726, 1171
Psp1406I	AACGTT	1 cut(s)	929
Psp6I	CCWGG	1 cut(s)	936
PspFI	CCCAGC	1 cut(s)	1302
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	7 cut(s)	148, 211, 898, 1119, 1120, 1267, 1428
PspOMI	GGGCCC	1 cut(s)	1117
PspPI	GGNCC	4 cut(s)	429, 1056, 1117, 1118
PsuI	RGATCY	3 cut(s)	896, 1146, 1426
PsyI	GACNNNGTC	3 cut(s)	674, 812, 954
RsaI	GTAC	4 cut(s)	63, 416, 824, 1244
RsaNI	GTAC	4 cut(s)	62, 415, 823, 1243
RseI	CAYNNNNRTG	2 cut(s)	1076, 1112
SacI	GAGCTC	3 cut(s)	232, 726, 1171
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	4 cut(s)	15, 450, 903, 1157
SatI	GCNGC	8 cut(s)	153, 156, 559, 645, 697, 768, 973, 1293
Sau3AI	GATC	5 cut(s)	102, 896, 1047, 1146, 1426
Sau96I	GGNCC	4 cut(s)	429, 1056, 1117, 1118
SchI	GAGTC	6 cut(s)	593, 618, 620, 901, 1197, 1212
ScrFI	CCNGG	1 cut(s)	938
SduI	GDGCHC	4 cut(s)	232, 726, 1121, 1171
SfaNI	GCATC	2 cut(s)	813, 1080
SfcI	CTRYAG	2 cut(s)	33, 1135
SmiMI	CAYNNNNRTG	2 cut(s)	1076, 1112
Sse9I	AATT	3 cut(s)	120, 1287, 1472
SspMI	CTAG	3 cut(s)	113, 455, 1007
SstI	GAGCTC	3 cut(s)	232, 726, 1171
StyD4I	CCNGG	1 cut(s)	936
StyI	CCWWGG	1 cut(s)	603
TaiI	ACGT	8 cut(s)	99, 170, 187, 374, 678, 714, 932, 1095
TaqI	TCGA	4 cut(s)	105, 585, 807, 1029
TaqII	GACCGA	1 cut(s)	603
TasI	AATT	3 cut(s)	120, 1287, 1472
TatI	WGTACW	1 cut(s)	822
TauI	GCSGC	6 cut(s)	155, 158, 561, 647, 770, 1295
TfiI	GAWTC	8 cut(s)	127, 291, 402, 530, 651, 834, 852, 1394
Tru1I	TTAA	4 cut(s)	15, 450, 903, 1157
Tru9I	TTAA	4 cut(s)	15, 450, 903, 1157
TscAI	CASTG	3 cut(s)	668, 1216, 1462
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	2 cut(s)	696, 972
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	3 cut(s)	58, 74, 904
TspGWI	ACGGA	3 cut(s)	484, 740, 889
TspRI	CASTG	3 cut(s)	668, 1216, 1462
Tth111I	GACNNNGTC	3 cut(s)	674, 812, 954
Van91I	CCANNNNNTGG	1 cut(s)	1128
XagI	CCTNNNNNAGG	1 cut(s)	1244
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	8
XmiI	GTMKAC	4 cut(s)	191, 327, 778, 1134
XspI	CTAG	3 cut(s)	113, 455, 1007
ZraI	GACGTC	4 cut(s)	168, 185, 676, 712
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.