Rorug06G0005700
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
746921 .. 748769
1849 bp
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UTR
Exon/CDS
Intron
Rorug06G0005700.1

Sequence Viewer

Length: 522 bp
ATGTCAGAATATTCCCCATATTCTATGAGATTCGGGTTCAAGGAACTTGTTCATGTTGAGCATGATCTTGAAATCAATACAACTCATGTCACTGGATTTTCTATAGATGTATTTAAAGCTGCAATTGGATCTTTGCCGTATGAAGTGCAGGACGAGTTTATTCCATTTGAGGATGCCAATGGAAACTCTGCAGGGACTTATAATGATCTTGTTTACCAGGTTTATCTCAAGGTACACATATGGATAATTGAGCATCCTACAAATGAAAACTTCCAAGGCACAGCAGCGGAACAAATTGGGACGGATCAAGGAACAGAAGCTAGGTTGGTTAGTTTGGTTCTGGCTATTTGTCAATGCCTTGACTGGGATAACAGCAGCAATGGAATTGTTTTACTATGGCCTCTGAGACACCACAGCTACATATACAAATTTGTTTTTATCTATATTATTGTAACCTATATAATAATGGATGGAGACTTGGTTTGCCCTGAAAAGATGGGAAGATCTGTAGAGGTATCCTGA

Protein Analysis

173

Amino Acids

19.71

Weight (kDa)

4.63

Isoelectric Point (pI)

25.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AciI CCGC 1 cut(s) 287
AclWI GGATC 2 cut(s) 136, 312
AcsI RAATTY 1 cut(s) 428
AfaI GTAC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 2 cut(s) 40, 71
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 3 cut(s) 119, 320, 417
AluI AGCT 3 cut(s) 119, 320, 417
Alw26I GTCTC 2 cut(s) 400, 468
AlwI GGATC 2 cut(s) 136, 312
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 3 cut(s) 119, 284, 375
ApoI RAATTY 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 106, 296, 387
BccI CCATC 2 cut(s) 464, 490
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 400, 468
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 3 cut(s) 102, 189, 507
BglII AGATCT 1 cut(s) 503
BisI GCNGC 3 cut(s) 120, 285, 376
BlsI GCNGC 3 cut(s) 121, 286, 377
Bme1390I CCNGG 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 218
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 2 cut(s) 163, 262
BmuI ACTGGG 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 97, 368
Bse3DI GCAATG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 3 cut(s) 178, 253, 475
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 2 cut(s) 97, 368
BseXI GCAGC 3 cut(s) 106, 296, 387
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 400
BslFI GGGAC 2 cut(s) 208, 313
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 400, 468
BsmFI GGGAC 2 cut(s) 208, 313
BsnI GGCC 1 cut(s) 400
Bsp143I GATC 5 cut(s) 64, 128, 205, 304, 503
BspACI CCGC 1 cut(s) 287
BspANI GGCC 1 cut(s) 400
BspCNI CTCAG 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 2 cut(s) 136, 312
BsrDI GCAATG 1 cut(s) 385
BsrI ACTGG 2 cut(s) 97, 368
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 5 cut(s) 64, 128, 205, 304, 503
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 218
BstDEI CTNAG 1 cut(s) 404
BstF5I GGATG 3 cut(s) 178, 253, 475
BstKTI GATC 5 cut(s) 67, 131, 208, 307, 506
BstMAI GTCTC 2 cut(s) 400, 468
BstMBI GATC 5 cut(s) 64, 128, 205, 304, 503
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 3 cut(s) 102, 189, 507
BstV1I GCAGC 3 cut(s) 106, 296, 387
BstX2I RGATCY 2 cut(s) 128, 503
BstYI RGATCY 2 cut(s) 128, 503
BsuRI GGCC 1 cut(s) 400
BtsCI GGATG 3 cut(s) 178, 253, 475
BtsIMutI CAGTG 1 cut(s) 90
CsiI ACCWGGT 1 cut(s) 216
Csp6I GTAC 1 cut(s) 233
CviAII CATG 3 cut(s) 53, 62, 86
CviJI RGCY 5 cut(s) 119, 320, 344, 400, 417
CviKI_1 RGCY 5 cut(s) 119, 320, 344, 400, 417
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 404
DpnI GATC 5 cut(s) 66, 130, 207, 306, 505
DpnII GATC 5 cut(s) 64, 128, 205, 304, 503
DraI TTTAAA 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 3 cut(s) 56, 65, 89
FaqI GGGAC 2 cut(s) 208, 313
FatI CATG 3 cut(s) 52, 61, 85
FauNDI CATATG 1 cut(s) 239
Fnu4HI GCNGC 3 cut(s) 120, 285, 376
FokI GGATG 3 cut(s) 185, 240, 482
Fsp4HI GCNGC 3 cut(s) 120, 285, 376
FspBI CTAG 1 cut(s) 321
GluI GCNGC 3 cut(s) 120, 285, 376
HaeIII GGCC 1 cut(s) 400
Hin1II CATG 3 cut(s) 56, 65, 89
HinfI GANTC 1 cut(s) 30
Hpy166II GTNNAC 2 cut(s) 214, 235
Hpy188I TCNGA 2 cut(s) 7, 405
Hpy188III TCNNGA 2 cut(s) 68, 519
Hpy8I GTNNAC 2 cut(s) 214, 235
HpyCH4V TGCA 3 cut(s) 122, 148, 191
HpyF3I CTNAG 1 cut(s) 404
Hsp92II CATG 3 cut(s) 56, 65, 89
Kzo9I GATC 5 cut(s) 64, 128, 205, 304, 503
LpnPI CCDG 8 cut(s) 78, 134, 177, 203, 230, 326, 349, 501
Lsp1109I GCAGC 3 cut(s) 106, 296, 387
LweI GCATC 2 cut(s) 163, 262
MabI ACCWGGT 1 cut(s) 216
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 88, 451
MalI GATC 5 cut(s) 66, 130, 207, 306, 505
MboI GATC 5 cut(s) 64, 128, 205, 304, 503
MboII GAAGA 1 cut(s) 513
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 2 cut(s) 128, 503
MluCI AATT 5 cut(s) 123, 246, 294, 384, 428
MnlI CCTC 3 cut(s) 163, 411, 505
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 218
NdeI CATATG 1 cut(s) 239
NdeII GATC 5 cut(s) 64, 128, 205, 304, 503
NlaIII CATG 3 cut(s) 56, 65, 89
NmuCI GTSAC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 3 cut(s) 121, 286, 377
PsiI TTATAA 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 2 cut(s) 128, 503
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 120, 285, 376
Sau3AI GATC 5 cut(s) 64, 128, 205, 304, 503
ScrFI CCNGG 1 cut(s) 218
SetI ASST 8 cut(s) 121, 222, 234, 322, 326, 419, 458, 516
SexAI ACCWGGT 1 cut(s) 216
SfaNI GCATC 2 cut(s) 163, 262
SfcI CTRYAG 3 cut(s) 102, 189, 507
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 5 cut(s) 123, 246, 294, 384, 428
SsiI CCGC 1 cut(s) 287
SspI AATATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 274
TasI AATT 5 cut(s) 123, 246, 294, 384, 428
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 3 cut(s) 119, 284, 375
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 41, 156, 279
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 97
XapI RAATTY 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.