Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001666

Physical Location & Seq

Genomic Coordinates Forward (+)

3610978 .. 3615215

Gene Structure 4238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGTTTAGGAGGAACGTTTCCAATGCTCAGGAAAAAGCTGCACCCGTTGGGTGGACTAATGGTGCTTCAAAGACAGGTGGAAAAGAGAAAGAACCACAACCTTATAATGTCATTGCTATTGGGAGTCAGGACCGGACTATAACAGTATGGACTACTGCAAGTCCCCGACCCCTCTTCGTAGCAAAGCATTTCTTTACTCAAAGTGTTGTGGATTTATCCTGGAGCCCTGATGGTTATTCACTTTTTGCGTGTTCTTTGGATGGTTCAGTGGCAACTTTCCATTTTGATGTTAAAGAACTTGGCAACCGTTTAAGTGATGCTGAACTGGATGAATTGAAGAGAAACCGTTATGGCGATGTTAGGGGTCGGCAAGCAAATTTAGCTGAAAGCCCAGCTCAATTATTGCTCGAAGCAGCATCTGCTAAGCAAGCCCCAAGCAAAAAAGTGGTTCTGGATGTTCAGCAAAACCAGACAGTTGTAAAACCTTCTGTCGATGCAACGGTTGCAACAAAAACTTCTGCAGATGGCTTAAATAAGGTCTCTATGCCTGCCAGAATTTCCAGTCCTGTGAAGCAGAGGGAATATAGACGCCCTGATGGTAGAAAGAGAATTATTCCAGAAGCAGTTGGGGTGCCTCTGCAGCAGGAAAATATTTCTGCTGGGGTTCAGACCCAGGCACTTGACTTCCCTTCTATGCCTTCTGATAGAAAAAATGATGAGAATGGGTTAATTGCAGCTGATAGTGGCATCAAAGAAACATCTGTTAGGGGAGCAATTGGCAGAAGCGCGGAAATAAAGGAGGGACATGGGGTAACTGCTAGAGCTATGATTACCAAAAGCCTTGTTATCGAGAAGGTTCCTGCCTCCACAGGTGGAGATGAAAGCATAGCTGTGGAACAGTCGGGGAATTTGAAGTCTTCTAGTTCGGCAGGTTCTTCATGTTCCACTCTTTCAATTAGGGTGTTAGATAGGAAAGAAGGAGAAGGCAATGCACCGATTTGCTTGGAAGCTCGACCTCGGGAACACGCTGCAAACGACATTGTTGGCATGGGAAATACATTTATCATGAAAGAAACAGAAATTACTTGCACAAGAGGGTTGCAAACTCTTTGGTCAGATAGGATATCTGGGAAAGTCACTGTTTTAGCTGGAAACGCTAACTTCTGGGCTGTTGGGTGTGAAGATGGATGCATACAGGTTTACACAAAGTGTGGGAGGCGTGCTATGCCAACTATGATGGTAGGATCCCGATCAATATTTATAGATTGTGACGAGTGCTGGAAATTATTTTTGGTCACAAGAAAAGGATCCTTTTATGTATGGGATCTATTAAAGCGGAATTGCCTCCTCCATGACTCATTGGCATCTTTGGTCGCTTCAAACCCAAACCCATCTGCAAAAGACGCAGGTGTGATCAAAGTTATATCAGCAAAGCTATCAAGATCTGGTTCTCCTCTTGTTGTTCTTGCCACTCGACATGCCTTCCTCTTTGACATGGGCCTGATGTGTTGGCTTAGGGTTGCAGATGATTGCTTTCCTGGGTCAAATTTTGCAAGCTCTTGGCATTCGGGGTCAACTCAGGGTGGTGAGCTGGCTGCTTTGCAGGTTGATGTTAGGAAATATGTGGCCAGAAAGCCAGGTTGGAGCAGGGTGACAGACGATGGAGTGCAGACACGTGCTCACTTGGAGGCTCAGTTGGCTTCCTCGCTAGCATTAAAGTCAGCTAAAGATTATCGCCAATGCCTTCTATCATATATACGCTTCCTTGCAAGGGAAGCAGATGAGTCTCGTTTACGAGAAGTGTGTGAGAGTTTTCTTGGACCTCCAACTGGGATGGTAGACGATACAACTTTAGATTTAAACAACTCGGCATGGGATCCTTATGTACTTGGAATGAGGAAACATAAACTTTTACGAGAAGATATCCTTCCGGCAATGGCTTCAAATAGAAAAGTACAGAGATTGCTTAACGAATTGATGGATCTCATTTCCGAATATGAAAGCGCTGAAACAAATATAGAGAAAAAGATTCAAACTTTGCTGACGGGACGTCAACCGGCAGCTGATGAAATGGACTCTGCTCCTTATAGGACAAATGAAATGGACATTGTACCTGCAGCACCAGAGAAAACGAAGTCTGTTCCTGCTTCAACTGACCAAAAGGACTCTTCCCAGCTAGCAACAGATGAAGAAAATTCTGCTCCGGTAGCAGAAGACAAAGTTAATTCAGATCCACCAATGGGCAATCAAGTTGGTGAAGCTGCACAAGATGCAGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

761

Amino Acids

82.57

Weight (kDa)

6.57

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hira	PF07569	405 - 604	8.4e-49	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44530 AT3G44530 AT3G44530 AT3G44530
fragaria_vesca	FvH4_3g24580 FvH4_3g24580 FvH4_3g24580 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610
malus_domestica	MD00G1078300.v1.1 MD10G1043400.v1.1
prunus_persica	Prupe.8G049500_v2.0.a1 Prupe.8G049500_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1
pyrus_communis	pycom05g03110 pycom10g03040
rosa_chinensis	RchiOBHm_Chr1g0317731 RchiOBHm_Chr5g0044121
rosa_laevigata	RLG00000030587 RLG00000034243 RLG00000034244
rosa_multiflora	Rmu_sc0000939.1_g000028 Rmu_sc0001158.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036920 Rroxscaffold_4G00330210
rosa_rugosa	Rorug01G0016900.1 Rorug05G0210500 Rorug05G0210600
rosa_samantha	Rh1AG029200 Rh1BG025400 Rh1CG026500 Rh1DG044000 Rh5AG294700 Rh5BG303400 Rh5CG330300 Rh5DG312200
rosa_wichuraiana	Rw0G013170 Rw0G019570 Rw5G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AarI	CACCTGC	1 cut(s)	1397
AatII	GACGTC	1 cut(s)	2053
Acc36I	ACCTGC	5 cut(s)	920, 1397, 1594, 2122, 2264
AccB1I	GGYRCC	1 cut(s)	631
AccI	GTMKAC	1 cut(s)	1839
AccII	CGCG	1 cut(s)	788
AciI	CCGC	2 cut(s)	788, 1336
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	9 cut(s)	1239, 1252, 1302, 1315, 1332, 1871, 1884, 1989, 2225
AcoI	YGGCCR	1 cut(s)	1626
AcsI	RAATTY	5 cut(s)	376, 555, 907, 1546, 2194
AcvI	CACGTG	1 cut(s)	1676
AcyI	GRCGYC	2 cut(s)	589, 2050
AdeI	CACNNNGTG	1 cut(s)	1209
AfaI	GTAC	3 cut(s)	1887, 1956, 2112
AfeI	AGCGCT	1 cut(s)	2005
AfiI	CCNNNNNNNGG	4 cut(s)	51, 1771, 1829, 2240
AflIII	ACRYGT	1 cut(s)	1673
AgsI	TTSAA	8 cut(s)	69, 337, 913, 954, 1380, 1944, 2033, 2151
AhdI	GACNNNNNGTC	1 cut(s)	2049
AjnI	CCWGG	4 cut(s)	218, 672, 1537, 1636
AjuI	GAANNNNNNNTTGG	4 cut(s)	1274, 1306, 1624, 1656
Alw21I	GWGCWC	1 cut(s)	1681
Alw26I	GTCTC	2 cut(s)	544, 1791
AlwI	GGATC	9 cut(s)	1239, 1252, 1302, 1315, 1332, 1871, 1884, 1989, 2225
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	1017
Aor51HI	AGCGCT	1 cut(s)	2005
AoxI	GGCC	2 cut(s)	1498, 1626
ApeKI	GCWGC	9 cut(s)	38, 413, 640, 734, 1028, 1595, 2060, 2117, 2261
ApoI	RAATTY	5 cut(s)	376, 555, 907, 1546, 2194
AspLEI	GCGC	2 cut(s)	788, 2006
AspS9I	GGNCC	3 cut(s)	130, 1498, 1820
AsuHPI	GGTGA	3 cut(s)	1598, 1663, 2267
AsuNHI	GCTAGC	2 cut(s)	1708, 2176
AvaI	CYCGRG	1 cut(s)	1017
AvaII	GGWCC	2 cut(s)	130, 1820
BalI	TGGCCA	1 cut(s)	1628
BamHI	GGATCC	3 cut(s)	1244, 1307, 1876
BanI	GGYRCC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	227
BbrPI	CACGTG	1 cut(s)	1676
BbsI	GAAGAC	2 cut(s)	909, 2220
Bbv12I	GWGCWC	1 cut(s)	1681
BbvI	GCAGC	9 cut(s)	25, 425, 652, 746, 1015, 1582, 2072, 2129, 2248
BciT130I	CCWGG	4 cut(s)	220, 674, 1539, 1638
BclI	TGATCA	1 cut(s)	1413
BcoDI	GTCTC	2 cut(s)	544, 1791
BfaI	CTAG	4 cut(s)	819, 921, 1709, 2177
BfmI	CTRYAG	3 cut(s)	519, 638, 2115
BfoI	RGCGCY	1 cut(s)	2007
BfuAI	ACCTGC	5 cut(s)	920, 1397, 1594, 2122, 2264
BglII	AGATCT	1 cut(s)	1442
BisI	GCNGC	9 cut(s)	39, 414, 641, 735, 1029, 1596, 2061, 2118, 2262
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	9 cut(s)	40, 415, 642, 736, 1030, 1597, 2062, 2119, 2263
Bme1390I	CCNGG	4 cut(s)	220, 674, 1539, 1638
Bme18I	GGWCC	2 cut(s)	130, 1820
BmeRI	GACNNNNNGTC	1 cut(s)	2049
BmeT110I	CYCGRG	1 cut(s)	1017
BmgT120I	GGNCC	3 cut(s)	130, 1498, 1820
BmiI	GGNNCC	6 cut(s)	224, 633, 858, 1246, 1309, 1878
BmrFI	CCNGG	4 cut(s)	220, 674, 1539, 1638
BmrI	ACTGGG	1 cut(s)	1839
BmsI	GCATC	7 cut(s)	307, 425, 484, 756, 1178, 1373, 2260
BmtI	GCTAGC	2 cut(s)	1712, 2180
BmuI	ACTGGG	1 cut(s)	1839
BpiI	GAAGAC	2 cut(s)	909, 2220
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	2 cut(s)	27, 1514
Bpu1102I	GCTNAGC	1 cut(s)	423
BsaAI	YACGTR	1 cut(s)	1676
BsaBI	GATNNNNATC	1 cut(s)	1249
BsaHI	GRCGYC	2 cut(s)	589, 2050
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	3 cut(s)	672, 1016, 1538
BsaWI	WCCGGW	2 cut(s)	132, 2203
BsaXI	ACNNNNNCTCC	2 cut(s)	1679, 1709
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 1771, 1829, 2240
Bse118I	RCCGGY	1 cut(s)	2056
Bse1I	ACTGG	3 cut(s)	330, 561, 1834
Bse3DI	GCAATG	3 cut(s)	111, 994, 1941
Bse8I	GATNNNNATC	1 cut(s)	1249
BseBI	CCWGG	4 cut(s)	220, 674, 1539, 1638
BseDI	CCNNGG	3 cut(s)	672, 1016, 1538
BseGI	GGATG	5 cut(s)	265, 334, 460, 1193, 1839
BseJI	GATNNNNATC	1 cut(s)	1249
BseLI	CCNNNNNNNGG	4 cut(s)	51, 1771, 1829, 2240
BseMI	GCAATG	3 cut(s)	111, 994, 1941
BseMII	CTCAG	3 cut(s)	41, 1592, 1706
BseNI	ACTGG	3 cut(s)	330, 561, 1834
BseRI	GAGGAG	2 cut(s)	1337, 1443
BseXI	GCAGC	9 cut(s)	25, 425, 652, 746, 1015, 1582, 2072, 2129, 2248
BseYI	CCCAGC	3 cut(s)	391, 659, 2172
BsgI	GTGCAG	3 cut(s)	24, 1688, 2247
Bsh1236I	CGCG	1 cut(s)	788
BshFI	GGCC	2 cut(s)	1500, 1628
BshNI	GGYRCC	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	1681
BsiHKCI	CYCGRG	1 cut(s)	1017
BsiSI	CCGG	4 cut(s)	133, 1931, 2057, 2204
BslFI	GGGAC	3 cut(s)	147, 816, 2061
BslI	CCNNNNNNNGG	4 cut(s)	51, 1771, 1829, 2240
BsmAI	GTCTC	2 cut(s)	544, 1791
BsmFI	GGGAC	3 cut(s)	147, 816, 2061
BsmI	GAATGC	1 cut(s)	1564
BsnI	GGCC	2 cut(s)	1500, 1628
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	1017
Bsp1286I	GDGCHC	2 cut(s)	227, 1681
Bsp143I	GATC	9 cut(s)	1244, 1250, 1307, 1324, 1413, 1442, 1876, 1981, 2230
Bsp1720I	GCTNAGC	1 cut(s)	423
BspACI	CCGC	2 cut(s)	788, 1336
BspANI	GGCC	2 cut(s)	1500, 1628
BspCNI	CTCAG	3 cut(s)	40, 1591, 1705
BspFNI	CGCG	1 cut(s)	788
BspHI	TCATGA	1 cut(s)	1065
BspLI	GGNNCC	6 cut(s)	224, 633, 858, 1246, 1309, 1878
BspMAI	CTGCAG	3 cut(s)	523, 642, 2119
BspMI	ACCTGC	5 cut(s)	920, 1397, 1594, 2122, 2264
BspOI	GCTAGC	2 cut(s)	1712, 2180
BspPI	GGATC	9 cut(s)	1239, 1252, 1302, 1315, 1332, 1871, 1884, 1989, 2225
BspT107I	GGYRCC	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	544
BsrDI	GCAATG	3 cut(s)	111, 994, 1941
BsrFI	RCCGGY	1 cut(s)	2056
BsrI	ACTGG	3 cut(s)	330, 561, 1834
BssAI	RCCGGY	1 cut(s)	2056
BssECI	CCNNGG	3 cut(s)	672, 1016, 1538
BssMI	GATC	9 cut(s)	1244, 1250, 1307, 1324, 1413, 1442, 1876, 1981, 2230
BssNI	GRCGYC	2 cut(s)	589, 2050
Bst2UI	CCWGG	4 cut(s)	220, 674, 1539, 1638
Bst4CI	ACNGT	7 cut(s)	145, 308, 347, 475, 502, 900, 1141
Bst6I	CTCTTC	3 cut(s)	179, 332, 2173
BstACI	GRCGYC	2 cut(s)	589, 2050
BstAPI	GCANNNNNTGC	3 cut(s)	419, 503, 2270
BstBAI	YACGTR	1 cut(s)	1676
BstC8I	GCNNGC	8 cut(s)	372, 429, 549, 1221, 1555, 1593, 1710, 2178
BstDEI	CTNAG	5 cut(s)	27, 423, 1514, 1578, 1692
BstF5I	GGATG	5 cut(s)	265, 334, 460, 1193, 1839
BstFNI	CGCG	1 cut(s)	788
BstH2I	RGCGCY	1 cut(s)	2007
BstHHI	GCGC	2 cut(s)	788, 2006
BstKTI	GATC	9 cut(s)	1247, 1253, 1310, 1327, 1416, 1445, 1879, 1984, 2233
BstMAI	GTCTC	2 cut(s)	544, 1791
BstMBI	GATC	9 cut(s)	1244, 1250, 1307, 1324, 1413, 1442, 1876, 1981, 2230
BstNI	CCWGG	4 cut(s)	220, 674, 1539, 1638
BstNSI	RCATGY	1 cut(s)	1481
BstSCI	CCNGG	4 cut(s)	218, 672, 1537, 1636
BstSFI	CTRYAG	3 cut(s)	519, 638, 2115
BstUI	CGCG	1 cut(s)	788
BstV1I	GCAGC	9 cut(s)	25, 425, 652, 746, 1015, 1582, 2072, 2129, 2248
BstV2I	GAAGAC	2 cut(s)	909, 2220
BstX2I	RGATCY	7 cut(s)	1244, 1307, 1324, 1442, 1876, 1981, 2230
BstYI	RGATCY	7 cut(s)	1244, 1307, 1324, 1442, 1876, 1981, 2230
BsuRI	GGCC	2 cut(s)	1500, 1628
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	5 cut(s)	265, 334, 460, 1193, 1839
BtsIMutI	CAGTG	2 cut(s)	273, 1137
BveI	ACCTGC	5 cut(s)	920, 1397, 1594, 2122, 2264
Cac8I	GCNNGC	8 cut(s)	372, 429, 549, 1221, 1555, 1593, 1710, 2178
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	1065
CfoI	GCGC	2 cut(s)	788, 2006
Cfr10I	RCCGGY	1 cut(s)	2056
Cfr13I	GGNCC	3 cut(s)	130, 1498, 1820
CseI	GACGC	2 cut(s)	597, 1412
Csp6I	GTAC	3 cut(s)	1886, 1955, 2111
CviAII	CATG	8 cut(s)	806, 939, 1048, 1066, 1352, 1478, 1495, 1872
CviQI	GTAC	3 cut(s)	1886, 1955, 2111
DdeI	CTNAG	5 cut(s)	27, 423, 1514, 1578, 1692
DpnI	GATC	9 cut(s)	1246, 1252, 1309, 1326, 1415, 1444, 1878, 1983, 2232
DpnII	GATC	9 cut(s)	1244, 1250, 1307, 1324, 1413, 1442, 1876, 1981, 2230
DraI	TTTAAA	1 cut(s)	1860
DraIII	CACNNNGTG	1 cut(s)	1209
DriI	GACNNNNNGTC	1 cut(s)	2049
EaeI	YGGCCR	1 cut(s)	1626
Eam1104I	CTCTTC	3 cut(s)	179, 332, 2173
Eam1105I	GACNNNNNGTC	1 cut(s)	2049
EarI	CTCTTC	3 cut(s)	179, 332, 2173
Eco24I	GRGCYC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	544
Eco32I	GATATC	2 cut(s)	1125, 1924
Eco47I	GGWCC	2 cut(s)	130, 1820
Eco47III	AGCGCT	1 cut(s)	2005
Eco72I	CACGTG	1 cut(s)	1676
Eco88I	CYCGRG	1 cut(s)	1017
EcoRII	CCWGG	4 cut(s)	218, 672, 1537, 1636
EcoRV	GATATC	2 cut(s)	1125, 1924
EcoT22I	ATGCAT	1 cut(s)	1193
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	8 cut(s)	809, 942, 1051, 1069, 1355, 1481, 1498, 1875
FalI	AAGNNNNNCTT	4 cut(s)	176, 208, 1911, 1943
FaqI	GGGAC	3 cut(s)	147, 816, 2061
FatI	CATG	8 cut(s)	805, 938, 1047, 1065, 1351, 1477, 1494, 1871
FbaI	TGATCA	1 cut(s)	1413
FblI	GTMKAC	1 cut(s)	1839
Fnu4HI	GCNGC	9 cut(s)	39, 414, 641, 735, 1029, 1596, 2061, 2118, 2262
FokI	GGATG	5 cut(s)	272, 341, 467, 1200, 1846
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	9 cut(s)	39, 414, 641, 735, 1029, 1596, 2061, 2118, 2262
FspBI	CTAG	4 cut(s)	819, 921, 1709, 2177
GlaI	GCGC	2 cut(s)	787, 2005
GluI	GCNGC	9 cut(s)	39, 414, 641, 735, 1029, 1596, 2061, 2118, 2262
GsaI	CCCAGC	3 cut(s)	395, 663, 2176
GsuI	CTGGAG	1 cut(s)	241
HaeII	RGCGCY	1 cut(s)	2007
HaeIII	GGCC	2 cut(s)	1500, 1628
HapII	CCGG	4 cut(s)	133, 1931, 2057, 2204
HgaI	GACGC	2 cut(s)	597, 1412
HhaI	GCGC	2 cut(s)	788, 2006
Hin1I	GRCGYC	2 cut(s)	589, 2050
Hin1II	CATG	8 cut(s)	809, 942, 1051, 1069, 1355, 1481, 1498, 1875
Hin6I	GCGC	2 cut(s)	786, 2004
HinP1I	GCGC	2 cut(s)	786, 2004
HincII	GTYRAC	2 cut(s)	1575, 2054
HindII	GTYRAC	2 cut(s)	1575, 2054
HinfI	GANTC	6 cut(s)	124, 1355, 1784, 2029, 2075, 2165
HpaII	CCGG	4 cut(s)	133, 1931, 2057, 2204
HphI	GGTGA	3 cut(s)	1598, 1663, 2267
Hpy166II	GTNNAC	6 cut(s)	54, 1201, 1575, 1793, 1840, 2054
Hpy188I	TCNGA	5 cut(s)	669, 703, 1117, 1993, 2230
Hpy8I	GTNNAC	6 cut(s)	54, 1201, 1575, 1793, 1840, 2054
HpyAV	CCTTC	9 cut(s)	495, 699, 708, 847, 971, 977, 1492, 1754, 1937
HpyCH4III	ACNGT	7 cut(s)	145, 308, 347, 475, 502, 900, 1141
HpyCH4IV	ACGT	3 cut(s)	15, 1675, 2050
HpyF3I	CTNAG	5 cut(s)	27, 423, 1514, 1578, 1692
HpySE526I	ACGT	3 cut(s)	15, 1675, 2050
Hsp92I	GRCGYC	2 cut(s)	589, 2050
Hsp92II	CATG	8 cut(s)	809, 942, 1051, 1069, 1355, 1481, 1498, 1875
HspAI	GCGC	2 cut(s)	786, 2004
Ksp22I	TGATCA	1 cut(s)	1413
Kzo9I	GATC	9 cut(s)	1244, 1250, 1307, 1324, 1413, 1442, 1876, 1981, 2230
LmnI	GCTCC	5 cut(s)	222, 770, 1644, 2086, 2206
Lsp1109I	GCAGC	9 cut(s)	25, 425, 652, 746, 1015, 1582, 2072, 2129, 2248
LweI	GCATC	7 cut(s)	307, 425, 484, 756, 1178, 1373, 2260
MaeI	CTAG	4 cut(s)	819, 921, 1709, 2177
MaeII	ACGT	3 cut(s)	15, 1675, 2050
MaeIII	GTNAC	5 cut(s)	811, 1135, 1268, 1294, 1651
MalI	GATC	9 cut(s)	1246, 1252, 1309, 1326, 1415, 1444, 1878, 1983, 2232
MboI	GATC	9 cut(s)	1244, 1250, 1307, 1324, 1413, 1442, 1876, 1981, 2230
MboII	GAAGA	9 cut(s)	166, 349, 909, 927, 1193, 1931, 2160, 2201, 2225
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	7 cut(s)	1244, 1307, 1324, 1442, 1876, 1981, 2230
MhlI	GDGCHC	2 cut(s)	227, 1681
MlsI	TGGCCA	1 cut(s)	1628
MluNI	TGGCCA	1 cut(s)	1628
MlyI	GAGTC	5 cut(s)	133, 1349, 1793, 2069, 2159
MmeI	TCCRAC	2 cut(s)	1622, 1850
Mox20I	TGGCCA	1 cut(s)	1628
Mph1103I	ATGCAT	1 cut(s)	1193
MscI	TGGCCA	1 cut(s)	1628
MseI	TTAA	9 cut(s)	291, 311, 530, 728, 1331, 1715, 1859, 1968, 2223
MslI	CAYNNNNRTG	2 cut(s)	285, 890
Msp20I	TGGCCA	1 cut(s)	1628
MspA1I	CMGCKG	2 cut(s)	737, 2063
MspI	CCGG	4 cut(s)	133, 1931, 2057, 2204
MspR9I	CCNGG	4 cut(s)	220, 674, 1539, 1638
MunI	CAATTG	1 cut(s)	774
Mva1269I	GAATGC	1 cut(s)	1564
MvaI	CCWGG	4 cut(s)	220, 674, 1539, 1638
MvnI	CGCG	1 cut(s)	788
NdeII	GATC	9 cut(s)	1244, 1250, 1307, 1324, 1413, 1442, 1876, 1981, 2230
NheI	GCTAGC	2 cut(s)	1708, 2176
NlaIII	CATG	8 cut(s)	809, 942, 1051, 1069, 1355, 1481, 1498, 1875
NlaIV	GGNNCC	6 cut(s)	224, 633, 858, 1246, 1309, 1878
NmeAIII	GCCGAG	1 cut(s)	1847
NmuCI	GTSAC	4 cut(s)	1135, 1268, 1294, 1651
NsiI	ATGCAT	1 cut(s)	1193
NspI	RCATGY	1 cut(s)	1481
PagI	TCATGA	1 cut(s)	1065
PaqCI	CACCTGC	1 cut(s)	1397
PcsI	WCGNNNNNNNCGW	1 cut(s)	1032
PctI	GAATGC	1 cut(s)	1564
PfeI	GAWTC	1 cut(s)	2029
PfoI	TCCNGGA	1 cut(s)	218
PkrI	GCNGC	9 cut(s)	40, 415, 642, 736, 1030, 1597, 2062, 2119, 2263
PleI	GAGTC	5 cut(s)	132, 1349, 1792, 2069, 2159
PmaCI	CACGTG	1 cut(s)	1676
PmlI	CACGTG	1 cut(s)	1676
PpsI	GAGTC	5 cut(s)	132, 1349, 1792, 2069, 2159
Ppu21I	YACGTR	1 cut(s)	1676
PsiI	TTATAA	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	4 cut(s)	218, 672, 1537, 1636
PspCI	CACGTG	1 cut(s)	1676
PspFI	CCCAGC	3 cut(s)	391, 659, 2172
PspGI	CCWGG	4 cut(s)	218, 672, 1537, 1636
PspN4I	GGNNCC	6 cut(s)	224, 633, 858, 1246, 1309, 1878
PspPI	GGNCC	3 cut(s)	130, 1498, 1820
PstI	CTGCAG	3 cut(s)	523, 642, 2119
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	7 cut(s)	1244, 1307, 1324, 1442, 1876, 1981, 2230
PvuII	CAGCTG	2 cut(s)	737, 2063
RsaI	GTAC	3 cut(s)	1887, 1956, 2112
RsaNI	GTAC	3 cut(s)	1886, 1955, 2111
RseI	CAYNNNNRTG	2 cut(s)	285, 890
SaqAI	TTAA	9 cut(s)	291, 311, 530, 728, 1331, 1715, 1859, 1968, 2223
SatI	GCNGC	9 cut(s)	39, 414, 641, 735, 1029, 1596, 2061, 2118, 2262
Sau3AI	GATC	9 cut(s)	1244, 1250, 1307, 1324, 1413, 1442, 1876, 1981, 2230
Sau96I	GGNCC	3 cut(s)	130, 1498, 1820
SchI	GAGTC	5 cut(s)	133, 1349, 1793, 2069, 2159
ScrFI	CCNGG	4 cut(s)	220, 674, 1539, 1638
SduI	GDGCHC	2 cut(s)	227, 1681
SfaNI	GCATC	7 cut(s)	307, 425, 484, 756, 1178, 1373, 2260
SfcI	CTRYAG	3 cut(s)	519, 638, 2115
SinI	GGWCC	2 cut(s)	130, 1820
SmiMI	CAYNNNNRTG	2 cut(s)	285, 890
SsiI	CCGC	2 cut(s)	788, 1336
SspI	AATATT	2 cut(s)	652, 1257
SspMI	CTAG	4 cut(s)	819, 921, 1709, 2177
StyD4I	CCNGG	4 cut(s)	218, 672, 1537, 1636
TaaI	ACNGT	7 cut(s)	145, 308, 347, 475, 502, 900, 1141
TaiI	ACGT	3 cut(s)	18, 1678, 2053
TaqI	TCGA	5 cut(s)	408, 492, 849, 1012, 1474
TatI	WGTACW	2 cut(s)	1885, 1954
TfiI	GAWTC	1 cut(s)	2029
Tru1I	TTAA	9 cut(s)	291, 311, 530, 728, 1331, 1715, 1859, 1968, 2223
Tru9I	TTAA	9 cut(s)	291, 311, 530, 728, 1331, 1715, 1859, 1968, 2223
TscAI	CASTG	2 cut(s)	273, 1144
TseFI	GTSAC	4 cut(s)	1135, 1268, 1294, 1651
TseI	GCWGC	9 cut(s)	38, 413, 640, 734, 1028, 1595, 2060, 2117, 2261
Tsp45I	GTSAC	4 cut(s)	1135, 1268, 1294, 1651
TspDTI	ATGAA	8 cut(s)	345, 894, 927, 1082, 2013, 2082, 2112, 2202
TspRI	CASTG	2 cut(s)	273, 1144
VpaK11BI	GGWCC	2 cut(s)	130, 1820
XapI	RAATTY	5 cut(s)	376, 555, 907, 1546, 2194
XceI	RCATGY	1 cut(s)	1481
XmiI	GTMKAC	1 cut(s)	1839
XspI	CTAG	4 cut(s)	819, 921, 1709, 2177
ZraI	GACGTC	1 cut(s)	2051
Zsp2I	ATGCAT	1 cut(s)	1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.