Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002968

Physical Location & Seq

Genomic Coordinates Forward (+)

27276884 .. 27277798

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAAACACCATTTTCTAGTCGCATTCAGGCTTTCAGTGACCAAATCTTTCGTATCAGATTGTTTCCGTTCATTTTCTTCACATTTCAGTGCTTCTGCAGCAACTGAAATGCTCTGTAGTCGTGGCCGTTGCGTCAGAACTGTTGGAACTCTCGTCGGACCTCATAACTCCACCGGGAAAGCACTTGCCTGTGAGCCCACCAGCTATTCTTCTGAGCACCCATTAACCTCTTCCGAGCTCGCTACATTTTTCTCATCGTTTTCCTCAAGAAACTCCAACCCAGGTTCTGATTTAAGCTCTGAATTCAAAGCTCGTTCTTTTGACGATGATGGTTTTGATGATTCGAATAATGGGTATGATAGAGAAAGGAAAATGGGTTCTGAAATTTTGGGGTATTTGAGTTTCTTGGGAGGTAGGAAGAGTGATTGTGAGAGTGATGACAGCAAAAAGTTTGGTATTTTTTATGACATTGAAAGGTCTGGTGGTGGAGAAGAAGAGGGTAGTGATCATAGTGATGATGGGGATTTAACGGTGTTGGATTCGTCGAGTCGGGTTCACGAGAAAGGCGAAAACTTTGGGAGTGTTGAAGGAGATGAAGAGGAATTTAGGCACCCATTGGTGAGAGAGGTTTGTAGGTTGATTGAGTTTAGGTCAGGTTGGAACCATAAGCTTGAAGGGGAATTAAAGAACTTGTTAAGAAGCTTGAAGCCGAGGCAAGTTTGCGCCCTGTTGAAGTCTCAGAGTAATGAGAGAGCTGCTTTGAAGTTTTTCTATTGGGCTGATAGGCAGTGGTTGTGTACTATGCAATGCTTGAGGTGCTTAGCAAGACTAAGTTGTGTCAAGGTGCTAAGAGGGTTCTCTCGCTCATGGCACGCTGGGGAAATGAGCGTAGCCCTGAGGCTTTTGGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

305

Amino Acids

34.11

Weight (kDa)

6.38

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30290 AT1G30290
fragaria_vesca	FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050
malus_domestica	MD10G1258300.v1.1
prunus_persica	Prupe.4G085500_v2.0.a1 Prupe.4G085500_v2.0.a1
pyrus_communis	pycom05g26000 pycom10g21460
rosa_chinensis	RchiOBHm_Chr3g0490541 RchiOBHm_Chr3g0490551 RchiOBHm_Chr5g0014911
rosa_laevigata	RLG00000022885 RLG00000032150
rosa_multiflora	Rmu_sc0003862.1_g000007 Rmu_sc0013610.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061660 Rroxscaffold_6G00393420
rosa_rugosa	Rorug03G0243900 Rorug05G0021400
rosa_samantha	Rh3AG293300 Rh3AG293400 Rh3BG329800 Rh3CG327300 Rh3CG327400 Rh3DG326700 Rh5AG117100 Rh5BG114100 Rh5CG125600 Rh5DG113500
rosa_wichuraiana	Rw3G025970 Rw5G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	609
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	3 cut(s)	302, 384, 602
AfaI	GTAC	1 cut(s)	799
AgsI	TTSAA	7 cut(s)	307, 473, 587, 674, 706, 733, 763
AjnI	CCWGG	1 cut(s)	280
AloI	GAACNNNNNNTCC	2 cut(s)	361, 393
AluBI	AGCT	7 cut(s)	204, 238, 297, 311, 670, 702, 755
AluI	AGCT	7 cut(s)	204, 238, 297, 311, 670, 702, 755
Alw21I	GWGCWC	2 cut(s)	219, 240
Alw26I	GTCTC	1 cut(s)	741
AlwNI	CAGNNNCTG	2 cut(s)	104, 287
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	98, 755
ApoI	RAATTY	3 cut(s)	302, 384, 602
Asp700I	GAANNNNTTC	1 cut(s)	767
AspLEI	GCGC	1 cut(s)	725
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	631
AsuII	TTCGAA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	158
AxyI	CCTNAGG	1 cut(s)	896
BanI	GGYRCC	1 cut(s)	609
BanII	GRGCYC	2 cut(s)	198, 240
BauI	CACGAG	1 cut(s)	557
Bbv12I	GWGCWC	2 cut(s)	219, 240
BbvI	GCAGC	2 cut(s)	110, 742
BccI	CCATC	2 cut(s)	323, 512
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	282
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	96, 115
BisI	GCNGC	2 cut(s)	99, 756
BlpI	GCTNAGC	1 cut(s)	820
BlsI	GCNGC	2 cut(s)	100, 757
Bme1390I	CCNGG	2 cut(s)	175, 282
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	2 cut(s)	611, 662
BmrFI	CCNGG	2 cut(s)	175, 282
Bpu1102I	GCTNAGC	1 cut(s)	820
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	2 cut(s)	250, 832
BpuMI	CCSGG	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	280, 710
Bse21I	CCTNAGG	1 cut(s)	896
Bse3DI	GCAATG	1 cut(s)	812
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	280, 710
BseMI	GCAATG	1 cut(s)	812
BseMII	CTCAG	3 cut(s)	204, 752, 887
BseXI	GCAGC	2 cut(s)	110, 742
BseYI	CCCAGC	1 cut(s)	875
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	609
BsiHKAI	GWGCWC	2 cut(s)	219, 240
BsiSI	CCGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	741
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	126
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	3 cut(s)	198, 219, 240
Bsp143I	GATC	1 cut(s)	505
Bsp1720I	GCTNAGC	1 cut(s)	820
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	3 cut(s)	205, 751, 888
BspLI	GGNNCC	2 cut(s)	611, 662
BspMAI	CTGCAG	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	812
BssECI	CCNNGG	2 cut(s)	280, 710
BssMI	GATC	1 cut(s)	505
BssSI	CACGAG	1 cut(s)	557
Bst2BI	CACGAG	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	142, 532
Bst6I	CTCTTC	4 cut(s)	235, 413, 489, 591
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	240, 873
BstDEI	CTNAG	6 cut(s)	213, 738, 820, 830, 848, 896
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 816
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	173, 280
BstSFI	CTRYAG	2 cut(s)	96, 115
BstV1I	GCAGC	2 cut(s)	110, 742
Bsu36I	CCTNAGG	1 cut(s)	896
BsuRI	GGCC	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	794
BtsIMutI	CAGTG	3 cut(s)	42, 94, 794
Cac8I	GCNNGC	2 cut(s)	240, 873
CaiI	CAGNNNCTG	2 cut(s)	104, 287
CfoI	GCGC	1 cut(s)	725
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	798
CviAII	CATG	1 cut(s)	867
CviQI	GTAC	1 cut(s)	798
DdeI	CTNAG	6 cut(s)	213, 738, 820, 830, 848, 896
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	4 cut(s)	235, 413, 489, 591
EarI	CTCTTC	4 cut(s)	235, 413, 489, 591
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	2 cut(s)	198, 240
Eco47I	GGWCC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	896
EcoICRI	GAGCTC	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	280
EcoT38I	GRGCYC	2 cut(s)	198, 240
FaeI	CATG	1 cut(s)	870
FaiI	YATR	8 cut(s)	165, 357, 465, 510, 666, 803, 868, 911
FatI	CATG	1 cut(s)	866
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	99, 756
FriOI	GRGCYC	2 cut(s)	198, 240
Fsp4HI	GCNGC	2 cut(s)	99, 756
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	2 cut(s)	99, 756
GsaI	CCCAGC	1 cut(s)	879
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	1 cut(s)	870
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HindIII	AAGCTT	2 cut(s)	668, 700
HinfI	GANTC	3 cut(s)	341, 539, 547
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	2 cut(s)	556, 798
Hpy188I	TCNGA	9 cut(s)	58, 137, 158, 214, 235, 289, 301, 382, 741
Hpy188III	TCNNGA	2 cut(s)	267, 557
Hpy8I	GTNNAC	2 cut(s)	556, 798
Hpy99I	CGWCG	2 cut(s)	158, 547
HpyAV	CCTTC	2 cut(s)	581, 668
HpyCH4III	ACNGT	2 cut(s)	142, 532
HpyCH4V	TGCA	2 cut(s)	98, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 816
HpyF3I	CTNAG	6 cut(s)	213, 738, 820, 830, 848, 896
Hsp92II	CATG	1 cut(s)	870
HspAI	GCGC	1 cut(s)	723
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	505
Lsp1109I	GCAGC	2 cut(s)	110, 742
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	7 cut(s)	69, 201, 222, 430, 503, 506, 608
MhlI	GDGCHC	3 cut(s)	198, 219, 240
MluCI	AATT	4 cut(s)	302, 384, 602, 680
MlyI	GAGTC	1 cut(s)	556
MmeI	TCCRAC	5 cut(s)	124, 136, 300, 516, 638
MroXI	GAANNNNTTC	1 cut(s)	767
MseI	TTAA	5 cut(s)	224, 293, 527, 683, 695
MslI	CAYNNNNRTG	2 cut(s)	87, 513
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	175, 282
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	98, 816
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	1 cut(s)	870
NlaIV	GGNNCC	2 cut(s)	611, 662
NmeAIII	GCCGAG	1 cut(s)	735
NmuCI	GTSAC	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PctI	GAATGC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	767
PfeI	GAWTC	2 cut(s)	341, 539
PkrI	GCNGC	2 cut(s)	100, 757
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	875
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	611, 662
PspPI	GGNCC	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	100
PstNI	CAGNNNCTG	2 cut(s)	104, 287
RsaI	GTAC	1 cut(s)	799
RsaNI	GTAC	1 cut(s)	798
RseI	CAYNNNNRTG	2 cut(s)	87, 513
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	5 cut(s)	224, 293, 527, 683, 695
SatI	GCNGC	2 cut(s)	99, 756
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	2 cut(s)	175, 282
SduI	GDGCHC	3 cut(s)	198, 219, 240
SfcI	CTRYAG	2 cut(s)	96, 115
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	87, 513
SmlI	CTYRAG	2 cut(s)	265, 811
SmoI	CTYRAG	2 cut(s)	265, 811
Sse9I	AATT	4 cut(s)	302, 384, 602, 680
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	173, 280
TaaI	ACNGT	2 cut(s)	142, 532
TaqI	TCGA	2 cut(s)	344, 545
TasI	AATT	4 cut(s)	302, 384, 602, 680
TatI	WGTACW	1 cut(s)	797
TfiI	GAWTC	2 cut(s)	341, 539
Tru1I	TTAA	5 cut(s)	224, 293, 527, 683, 695
Tru9I	TTAA	5 cut(s)	224, 293, 527, 683, 695
TscAI	CASTG	3 cut(s)	42, 94, 794
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	98, 755
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	17, 60, 609
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	3 cut(s)	42, 94, 794
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	3 cut(s)	302, 384, 602
XmnI	GAANNNNTTC	1 cut(s)	767
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.