Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002968

Physical Location & Seq

Genomic Coordinates Reverse (-)

1390191 .. 1392118

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0021400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAATTGGGGGGCCTTAGGCCTGCGCCTATTAGGCCTATGCCTAGGGCCGGCTCTGCTGAGGTAGAAAACCAGCTCAAGACCAATTTGTCCTACCAGCGGGCCCTTCAGGCACGCCAGGGAGTGCCATATGGTGGTCTAATCCGCGTTCAATTGTTTCCTCCTCCTCCTCCGCCCCGTGATGATTATAGGGCAACTGTGAGGTATATAGAATACACATTAAGTCAACTTAAGAATGGAATCGTTTCACAACAGATGGTAGATTCGGCTAAGGAAACGGTACGCCGCCTTAGATCGAAAGGATATTCCAGCTTAGATGAGGATGAAGCAATCACTCTAAAGGACAGCATTCACTTCCTTGGTAGGCTAGAAAGCACCCCCTCTCCCTTTAGGGAGAGGTTTCTTAACTTTGCTGAAGACATTCCAAGCCGTGTCCGCTGCCTCCGTCAAATGCAGGAAACATTGATTGATCAGCCAAATCTTGTAGAGCAAGAGAGACAATGCATAGCCGAAATTCAGAACAGAATGCAAGCCCGCGCTCTAAGAAACCAACAGTTTGATGAGGAAGAAGTGACGGTCATTTGTGAGAGGGCTAAGAGAGAAGAGGAGAAAGAGGTTCTAATCACCAGATTGGAGGACATTCGCTGCAATGTGACTGAAATTTCCACAGCCTCGTCTTATATAGATGGTGGGAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

233

Amino Acids

26.79

Weight (kDa)

7.63

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30290 AT1G30290
fragaria_vesca	FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050
malus_domestica	MD10G1258300.v1.1
prunus_persica	Prupe.4G085500_v2.0.a1 Prupe.4G085500_v2.0.a1
pyrus_communis	pycom05g26000 pycom10g21460
rosa_chinensis	RchiOBHm_Chr3g0490541 RchiOBHm_Chr3g0490551 RchiOBHm_Chr5g0014911
rosa_laevigata	RLG00000022885 RLG00000032150
rosa_multiflora	Rmu_sc0003862.1_g000007 Rmu_sc0013610.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061660 Rroxscaffold_6G00393420
rosa_rugosa	Rorug03G0243900 Rorug05G0021400
rosa_samantha	Rh3AG293300 Rh3AG293400 Rh3BG329800 Rh3CG327300 Rh3CG327400 Rh3DG326700 Rh5AG117100 Rh5BG114100 Rh5CG125600 Rh5DG113500
rosa_wichuraiana	Rw3G025970 Rw5G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
AccB7I	CCANNNNNTGG	1 cut(s)	134
AccII	CGCG	2 cut(s)	147, 537
AciI	CCGC	6 cut(s)	100, 145, 173, 286, 436, 535
AcsI	RAATTY	2 cut(s)	513, 660
AcuI	CTGAAG	2 cut(s)	92, 435
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	50, 99, 134
AflII	CTTAAG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	2 cut(s)	76, 312
AluI	AGCT	2 cut(s)	76, 312
Alw26I	GTCTC	1 cut(s)	490
AoxI	GGCC	5 cut(s)	13, 20, 35, 48, 102
ApaI	GGGCCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	438, 645
ApoI	RAATTY	2 cut(s)	513, 660
Asp700I	GAANNNNTTC	2 cut(s)	244, 420
AspA2I	CCTAGG	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	28, 539
AspS9I	GGNCC	4 cut(s)	13, 48, 102, 103
AsuHPI	GGTGA	1 cut(s)	616
AvrII	CCTAGG	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	423
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	425, 632
BccI	CCATC	2 cut(s)	250, 680
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	490
BfaI	CTAG	2 cut(s)	45, 368
BfrI	CTTAAG	1 cut(s)	230
BglI	GCCNNNNNGGC	2 cut(s)	34, 110
BisI	GCNGC	3 cut(s)	286, 439, 646
BlnI	CCTAGG	1 cut(s)	44
BlsI	GCNGC	3 cut(s)	287, 440, 647
Bme1390I	CCNGG	1 cut(s)	119
BmgT120I	GGNCC	4 cut(s)	13, 48, 102, 103
BmiI	GGNNCC	2 cut(s)	14, 104
BmrFI	CCNGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	423
Bpu10I	CCTNAGC	2 cut(s)	60, 270
BpuEI	CTTGAG	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	44, 118, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 99, 134
Bse118I	RCCGGY	1 cut(s)	50
Bse21I	CCTNAGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	44, 118, 358
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	3 cut(s)	50, 99, 134
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	4 cut(s)	153, 156, 159, 620
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	425, 632
Bsh1236I	CGCG	2 cut(s)	147, 537
BshFI	GGCC	5 cut(s)	15, 22, 37, 50, 104
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	3 cut(s)	50, 99, 134
BsmAI	GTCTC	1 cut(s)	490
BsmI	GAATGC	2 cut(s)	348, 531
BsnI	GGCC	5 cut(s)	15, 22, 37, 50, 104
Bsp120I	GGGCCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	3 cut(s)	293, 469, 696
BspACI	CCGC	6 cut(s)	100, 145, 173, 286, 436, 535
BspANI	GGCC	5 cut(s)	15, 22, 37, 50, 104
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	2 cut(s)	147, 537
BspLI	GGNNCC	2 cut(s)	14, 104
BspTI	CTTAAG	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	655
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	3 cut(s)	44, 118, 358
BssMI	GATC	3 cut(s)	293, 469, 696
BssT1I	CCWWGG	2 cut(s)	44, 358
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	4 cut(s)	199, 280, 555, 577
Bst6I	CTCTTC	1 cut(s)	597
BstAFI	CTTAAG	1 cut(s)	230
BstC8I	GCNNGC	6 cut(s)	24, 52, 102, 115, 531, 535
BstDEI	CTNAG	7 cut(s)	17, 60, 270, 290, 313, 542, 594
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	147, 537
BstHHI	GCGC	2 cut(s)	28, 539
BstKTI	GATC	3 cut(s)	296, 472, 699
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	3 cut(s)	293, 469, 696
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 56, 110, 435
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	2 cut(s)	147, 537
BstV1I	GCAGC	2 cut(s)	425, 632
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	696
BstYI	RGATCY	1 cut(s)	696
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	5 cut(s)	15, 22, 37, 50, 104
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	6 cut(s)	24, 52, 102, 115, 531, 535
CfoI	GCGC	2 cut(s)	28, 539
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	4 cut(s)	13, 48, 102, 103
Csp6I	GTAC	1 cut(s)	281
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	7 cut(s)	17, 60, 270, 290, 313, 542, 594
DpnI	GATC	3 cut(s)	295, 471, 698
DpnII	GATC	3 cut(s)	293, 469, 696
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
EciI	GGCGGA	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	44, 358
Eco147I	AGGCCT	2 cut(s)	22, 37
Eco24I	GRGCYC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	92, 435
Eco81I	CCTNAGG	1 cut(s)	17
EcoO109I	RGGNCCY	2 cut(s)	13, 103
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	44, 358
EcoT22I	ATGCAT	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	2 cut(s)	44, 358
FaiI	YATR	9 cut(s)	41, 130, 132, 189, 207, 209, 506, 681, 683
FauI	CCCGC	2 cut(s)	93, 542
FauNDI	CATATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	3 cut(s)	286, 439, 646
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	286, 439, 646
FspBI	CTAG	2 cut(s)	45, 368
GlaI	GCGC	2 cut(s)	27, 538
GluI	GCNGC	3 cut(s)	286, 439, 646
HaeIII	GGCC	5 cut(s)	15, 22, 37, 50, 104
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	2 cut(s)	28, 539
Hin6I	GCGC	2 cut(s)	26, 537
HinP1I	GCGC	2 cut(s)	26, 537
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	2 cut(s)	240, 263
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	519, 701
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	4 cut(s)	199, 280, 555, 577
HpyCH4V	TGCA	4 cut(s)	454, 504, 529, 648
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 56, 110, 435
HpyF3I	CTNAG	7 cut(s)	17, 60, 270, 290, 313, 542, 594
HspAI	GCGC	2 cut(s)	26, 537
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	293, 469, 696
Lsp1109I	GCAGC	2 cut(s)	425, 632
MaeI	CTAG	2 cut(s)	45, 368
MaeIII	GTNAC	2 cut(s)	571, 652
MalI	GATC	3 cut(s)	295, 471, 698
MboI	GATC	3 cut(s)	293, 469, 696
MboII	GAAGA	3 cut(s)	428, 578, 614
MfeI	CAATTG	1 cut(s)	152
MflI	RGATCY	1 cut(s)	696
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	5 cut(s)	5, 85, 152, 513, 660
Mph1103I	ATGCAT	1 cut(s)	506
MroNI	GCCGGC	1 cut(s)	50
MroXI	GAANNNNTTC	2 cut(s)	244, 420
MseI	TTAA	3 cut(s)	221, 231, 405
MspA1I	CMGCKG	2 cut(s)	100, 438
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	152
Mva1269I	GAATGC	2 cut(s)	348, 531
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	2 cut(s)	147, 537
MwoI	GCNNNNNNNGC	4 cut(s)	34, 56, 110, 435
NaeI	GCCGGC	1 cut(s)	52
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	3 cut(s)	293, 469, 696
NgoMIV	GCCGGC	1 cut(s)	50
NlaIV	GGNNCC	2 cut(s)	14, 104
NmuCI	GTSAC	2 cut(s)	571, 652
NsiI	ATGCAT	1 cut(s)	506
PceI	AGGCCT	2 cut(s)	22, 37
PctI	GAATGC	2 cut(s)	348, 531
PdiI	GCCGGC	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	244, 420
PfeI	GAWTC	2 cut(s)	240, 263
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	287, 440, 647
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	14, 104
PspOMI	GGGCCC	1 cut(s)	102
PspPI	GGNCC	4 cut(s)	13, 48, 102, 103
PsuI	RGATCY	1 cut(s)	696
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	221, 231, 405
SatI	GCNGC	3 cut(s)	286, 439, 646
Sau3AI	GATC	3 cut(s)	293, 469, 696
Sau96I	GGNCC	4 cut(s)	13, 48, 102, 103
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	6 cut(s)	66, 78, 206, 314, 401, 618
SmlI	CTYRAG	2 cut(s)	77, 230
SmoI	CTYRAG	2 cut(s)	77, 230
Sse9I	AATT	5 cut(s)	5, 85, 152, 513, 660
SseBI	AGGCCT	2 cut(s)	22, 37
SsiI	CCGC	6 cut(s)	100, 145, 173, 286, 436, 535
SspMI	CTAG	2 cut(s)	45, 368
StuI	AGGCCT	2 cut(s)	22, 37
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	2 cut(s)	44, 358
TaaI	ACNGT	4 cut(s)	199, 280, 555, 577
TaqI	TCGA	1 cut(s)	296
TasI	AATT	5 cut(s)	5, 85, 152, 513, 660
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	240, 263
Tru1I	TTAA	3 cut(s)	221, 231, 405
Tru9I	TTAA	3 cut(s)	221, 231, 405
TseFI	GTSAC	2 cut(s)	571, 652
TseI	GCWGC	2 cut(s)	438, 645
Tsp45I	GTSAC	2 cut(s)	571, 652
TspDTI	ATGAA	2 cut(s)	17, 339
TspGWI	ACGGA	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	230
XapI	RAATTY	2 cut(s)	513, 660
XmaJI	CCTAGG	1 cut(s)	44
XmnI	GAANNNNTTC	2 cut(s)	244, 420
XspI	CTAG	2 cut(s)	45, 368
Zsp2I	ATGCAT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.