Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002968

Physical Location & Seq

Genomic Coordinates Forward (+)

83750118 .. 83754356

Gene Structure 4239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1863 bp

ATGTCATATAATATTGTTCCTCTTCAGTTTCTGTTTGCATTTTCTGGGTCTTTCTCTGCTGCAGTAACTACAATGGCCTCTATTCGTAGCTACATTCGAACCGGAGGAGCAGCTCGGCTCAGACCTCATAACTCGTGTGTGTCCACCACATCTTTCTCTCAGTACCCTTTAACTTTTGTTGAGCTCCCTCAATTTTTCTCATCAGTTAGCTCAAGAAACTCAAGTTCAGATTTTTGCTCTGGAATTAGACCTCATTCTGTTGAAAGTTATGATTTTGATGATTCTAATAATGGGAATGGTAGGTTTAGGAAAATGGGTGATCGAAATATGGCGGGTTTGAGTTTCTTAGGAGTTGCCCAGAGTGATTGTGAAAATCCCCAAAGTGAAAGTTTCAAACTTTTTGAAGTTTCAGATAGCGAAGAAGGGAATAATAGTGATGGTGGTGATGATGAGTTAATGATGTTGAATTCTAATAGGGGTTGTGAGGAAAAAGAGAATTTGGGTAGAATTGAAGGAGATGGGGATGAGGATGAATATAGACACCCTTTGGTGAGAGAGGTTTGCAGGCTAATTGAGCTTAGAACAGCTTGGACCCCAAAGTTTGAAGGTGAGTTAAGGCACTTGTTACGAAGCCTGAAGCCGAAGCAGGTCTGTGCTGTTTTGAAGTCTCAGGCTGATGAAAGAGTTGCTTTGAAGATTTTTTACTGGGCTGATAGGCAGTGGCGGTATAAGCATGACCCGATTGTGTACTATGCAATGCTTGAGGTGCTTGGCAAGACTAAGTTGTGCCAAGGTGCTAGGAGGGTTCTTAGGTTAATGGCCCGTAGGCGGATTGAGCTTCGTTCTGAAGCTTTTGGCCATGTGATGGTGTCATATAGTCGAGCGGGCAAGTTGAGGCACGCGTTGCGTGTGTTGACTTTGATGCAGAAAGCGGGGCTCGAGCTTGATTTGTCAATGTGTAATACTGCAATTTATGTTTTGGTTAAGGGTAATAAGTTGGAGAAGGCGTTGAGGACCTTGGAAAGGATGAAGCTTGTTGGGATTGCACCAAATGTAGTCACTTATAACTGTTTGATAAAGGGGTATTGTGATCTGCATCGTGTAGAAGATGCAATCCAGGTGATTGATGAAATGCCGAGGAAGGGGTGTGCTCCTGATAAAGTTAGTTACTATACTGTGATGGATTTCCTTTGTAAGGAGAAGAGGGTCAAAGAAGTGAGGGACTTGATGGAGAAGATGATCAAGGATGGTGAGTTGTTACCAGACCAGGTCACTTATAATAATCTTGTCCATGTGCTTTGTAAGCATGGCTATGGTGATGAGGCACTTGAATTTTTAAGGGAAGCCGAAGAGAAGGGATTTCGGTTTGATAAGGTTGGGTATAGTGCAATTGTACATTCATTTTGTAAGGATGGTCGGACTGACATGGCAAAAGAAATTGTTAGTGAAATGTTCTCAAGAGGTTGCATCCCAGATGTTGTAACATACACTGCTGTTCTGAATGGGTATTGTCGACTTGGTAAGTTGGATCAAGCTAAAAAGATGCTTCAGCACATGCATAAGCATGGTTGCAAGCCAAATACTGTATCATATACGGCCTTATTAAATGGGCTTTGTCGTGGTGGGAACTCATTGGAGGCAAGAGAGATGATGAACACGAGTGAGGAAGAATGGTGGACACCAAATGCCATCACTTATAGTGTTCTGATGCATGGGTTCCGGAGGGAAGGGAAATTGGTTGAGGCTTGTGATACTGTCAAAGAGATGATTAAAAAGGGATTTTTCCCTACCCCAGTTGAAATTAATCTCTTTGCCAAGAGGGGAAGATGGATGACGCTAAACATTTCATGGAGGAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

620

Amino Acids

70.66

Weight (kDa)

8.62

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	254 - 344	3.1e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	285 - 448	3.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	304 - 362	3.4e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	318 - 364	1.9e-11	PPR repeat family
PPR_1	PF12854	347 - 378	8.3e-12	PPR repeat
PPR_2	PF13041	350 - 399	5.1e-17	PPR repeat family
PPR	PF01535	353 - 383	8e-08	PPR repeat
PPR_1	PF12854	419 - 448	5.8e-08	PPR repeat
PPR_2	PF13041	421 - 470	4e-10	PPR repeat family
PPR_long	PF17177	423 - 576	3.3e-12	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	424 - 454	1.1e-06	PPR repeat
PPR_3	PF13812	446 - 496	7.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	452 - 484	5.9e-06	PPR repeat
PPR_2	PF13041	458 - 505	3.3e-13	PPR repeat family
PPR_3	PF13812	480 - 536	4.7e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	487 - 519	9.4e-12	PPR repeat
PPR_2	PF13041	491 - 540	3.1e-19	PPR repeat family
PPR	PF01535	494 - 524	5.8e-08	PPR repeat
PPR_1	PF12854	522 - 552	6.9e-08	PPR repeat
PPR_2	PF13041	561 - 597	8.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30290 AT1G30290
fragaria_vesca	FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050
malus_domestica	MD10G1258300.v1.1
prunus_persica	Prupe.4G085500_v2.0.a1 Prupe.4G085500_v2.0.a1
pyrus_communis	pycom05g26000 pycom10g21460
rosa_chinensis	RchiOBHm_Chr3g0490541 RchiOBHm_Chr3g0490551 RchiOBHm_Chr5g0014911
rosa_laevigata	RLG00000022885 RLG00000032150
rosa_multiflora	Rmu_sc0003862.1_g000007 Rmu_sc0013610.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061660 Rroxscaffold_6G00393420
rosa_rugosa	Rorug03G0243900 Rorug05G0021400
rosa_samantha	Rh3AG293300 Rh3AG293400 Rh3BG329800 Rh3CG327300 Rh3CG327400 Rh3DG326700 Rh5AG117100 Rh5BG114100 Rh5CG125600 Rh5DG113500
rosa_wichuraiana	Rw3G025970 Rw5G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1065, 1278
Acc36I	ACCTGC	1 cut(s)	637
AccB7I	CCANNNNNTGG	1 cut(s)	865
AccBSI	CCGCTC	1 cut(s)	884
AccI	GTMKAC	1 cut(s)	1513
AccII	CGCG	1 cut(s)	902
AccIII	TCCGGA	1 cut(s)	1719
AciI	CCGC	5 cut(s)	332, 724, 829, 884, 932
AclWI	GGATC	1 cut(s)	1536
AcoI	YGGCCR	1 cut(s)	856
AcsI	RAATTY	3 cut(s)	466, 496, 1331
AcuI	CTGAAG	4 cut(s)	8, 656, 867, 1532
AfaI	GTAC	3 cut(s)	164, 749, 1395
AfiI	CCNNNNNNNGG	5 cut(s)	828, 865, 1023, 1142, 1195
AflIII	ACRYGT	1 cut(s)	900
AjnI	CCWGG	2 cut(s)	1116, 1266
Alw21I	GWGCWC	2 cut(s)	186, 1153
Alw26I	GTCTC	1 cut(s)	672
AlwI	GGATC	1 cut(s)	1536
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	938
Aor13HI	TCCGGA	1 cut(s)	1719
AoxI	GGCC	4 cut(s)	75, 819, 856, 1596
ApeKI	GCWGC	2 cut(s)	59, 110
ApoI	RAATTY	3 cut(s)	466, 496, 1331
AseI	ATTAAT	1 cut(s)	1803
AspS9I	GGNCC	3 cut(s)	591, 820, 1014
AsuHPI	GGTGA	7 cut(s)	329, 455, 562, 620, 1132, 1262, 1328
AsuII	TTCGAA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	938
AvaII	GGWCC	2 cut(s)	591, 1014
BalI	TGGCCA	1 cut(s)	858
BanII	GRGCYC	2 cut(s)	186, 939
BarI	GAAGNNNNNNTAC	2 cut(s)	686, 718
BauI	CACGAG	2 cut(s)	133, 1657
Bbv12I	GWGCWC	2 cut(s)	186, 1153
BbvI	GCAGC	2 cut(s)	46, 122
BccI	CCATC	9 cut(s)	431, 512, 859, 1174, 1222, 1241, 1406, 1697, 1821
BceAI	ACGGC	1 cut(s)	1611
BciT130I	CCWGG	2 cut(s)	1118, 1268
BclI	TGATCA	1 cut(s)	1239
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	1 cut(s)	798
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	2 cut(s)	60, 111
BlsI	GCNGC	2 cut(s)	61, 112
Bme1390I	CCNGG	2 cut(s)	1118, 1268
Bme18I	GGWCC	2 cut(s)	591, 1014
BmeT110I	CYCGRG	1 cut(s)	938
BmgT120I	GGNCC	3 cut(s)	591, 820, 1014
BmiI	GGNNCC	2 cut(s)	593, 1718
BmrFI	CCNGG	2 cut(s)	1118, 1268
BmrI	ACTGGG	2 cut(s)	715, 1787
BmsI	GCATC	6 cut(s)	912, 1099, 1105, 1476, 1533, 1698
BmuI	ACTGGG	2 cut(s)	715, 1787
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	4 cut(s)	196, 205, 782, 1441
BsaBI	GATNNNNATC	1 cut(s)	1095
BsaJI	CCNNGG	3 cut(s)	790, 1017, 1136
BsaWI	WCCGGW	2 cut(s)	101, 1719
BsaXI	ACNNNNNCTCC	2 cut(s)	992, 1022
Bsc4I	CCNNNNNNNGG	5 cut(s)	828, 865, 1023, 1142, 1195
Bse1I	ACTGG	2 cut(s)	710, 1793
Bse3DI	GCAATG	1 cut(s)	762
Bse8I	GATNNNNATC	1 cut(s)	1095
BseAI	TCCGGA	1 cut(s)	1719
BseBI	CCWGG	2 cut(s)	1118, 1268
BseDI	CCNNGG	3 cut(s)	790, 1017, 1136
BseGI	GGATG	7 cut(s)	529, 535, 1032, 1252, 1417, 1467, 1836
BseJI	GATNNNNATC	1 cut(s)	1095
BseLI	CCNNNNNNNGG	5 cut(s)	828, 865, 1023, 1142, 1195
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	3 cut(s)	133, 173, 683
BseNI	ACTGG	2 cut(s)	710, 1793
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	46, 122
Bsh1236I	CGCG	1 cut(s)	902
BshFI	GGCC	4 cut(s)	77, 821, 858, 1598
BsiHKAI	GWGCWC	2 cut(s)	186, 1153
BsiHKCI	CYCGRG	1 cut(s)	938
BsiSI	CCGG	2 cut(s)	102, 1720
BslFI	GGGAC	1 cut(s)	1235
BslI	CCNNNNNNNGG	5 cut(s)	828, 865, 1023, 1142, 1195
BsmAI	GTCTC	1 cut(s)	672
BsmFI	GGGAC	1 cut(s)	1235
BsnI	GGCC	4 cut(s)	77, 821, 858, 1598
BsoBI	CYCGRG	1 cut(s)	938
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	3 cut(s)	186, 939, 1153
Bsp13I	TCCGGA	1 cut(s)	1719
Bsp1407I	TGTACA	1 cut(s)	1393
Bsp143I	GATC	4 cut(s)	319, 1090, 1239, 1528
BspACI	CCGC	5 cut(s)	332, 724, 829, 884, 932
BspANI	GGCC	4 cut(s)	77, 821, 858, 1598
BspCNI	CTCAG	3 cut(s)	132, 172, 682
BspEI	TCCGGA	1 cut(s)	1719
BspFNI	CGCG	1 cut(s)	902
BspLI	GGNNCC	2 cut(s)	593, 1718
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	1536
BspT104I	TTCGAA	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	884
BsrDI	GCAATG	1 cut(s)	762
BsrGI	TGTACA	1 cut(s)	1393
BsrI	ACTGG	2 cut(s)	710, 1793
BssECI	CCNNGG	3 cut(s)	790, 1017, 1136
BssMI	GATC	4 cut(s)	319, 1090, 1239, 1528
BssSI	CACGAG	2 cut(s)	133, 1657
BssT1I	CCWWGG	2 cut(s)	790, 1017
Bst2BI	CACGAG	2 cut(s)	133, 1657
Bst2UI	CCWGG	2 cut(s)	1118, 1268
Bst4CI	ACNGT	4 cut(s)	1070, 1177, 1585, 1756
Bst6I	CTCTTC	3 cut(s)	27, 1196, 1344
BstAPI	GCANNNNNTGC	1 cut(s)	904
BstAUI	TGTACA	1 cut(s)	1393
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	566, 886, 900, 1574
BstDEI	CTNAG	7 cut(s)	119, 159, 346, 578, 669, 780, 809
BstENI	CCTNNNNNAGG	2 cut(s)	1021, 1193
BstF5I	GGATG	7 cut(s)	529, 535, 1032, 1252, 1417, 1467, 1836
BstFNI	CGCG	1 cut(s)	902
BstKTI	GATC	4 cut(s)	322, 1093, 1242, 1531
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	4 cut(s)	319, 1090, 1239, 1528
BstMWI	GCNNNNNNNGC	6 cut(s)	574, 730, 766, 835, 904, 1303
BstNI	CCWGG	2 cut(s)	1118, 1268
BstNSI	RCATGY	1 cut(s)	1558
BstSCI	CCNGG	2 cut(s)	1116, 1266
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	902
BstV1I	GCAGC	2 cut(s)	46, 122
BsuRI	GGCC	4 cut(s)	77, 821, 858, 1598
BtsCI	GGATG	7 cut(s)	529, 535, 1032, 1252, 1417, 1467, 1836
BtsI	GCAGTG	2 cut(s)	725, 1488
BtsIMutI	CAGTG	2 cut(s)	725, 1488
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	4 cut(s)	566, 886, 900, 1574
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	591, 820, 1014
CseI	GACGC	1 cut(s)	1843
CsiI	ACCWGGT	1 cut(s)	1266
Csp6I	GTAC	3 cut(s)	163, 748, 1394
CviAII	CATG	9 cut(s)	734, 860, 1292, 1307, 1426, 1555, 1565, 1712, 1848
CviQI	GTAC	3 cut(s)	163, 748, 1394
DdeI	CTNAG	7 cut(s)	119, 159, 346, 578, 669, 780, 809
DpnI	GATC	4 cut(s)	321, 1092, 1241, 1530
DpnII	GATC	4 cut(s)	319, 1090, 1239, 1528
EaeI	YGGCCR	1 cut(s)	856
Eam1104I	CTCTTC	3 cut(s)	27, 1196, 1344
EarI	CTCTTC	3 cut(s)	27, 1196, 1344
EciI	GGCGGA	1 cut(s)	844
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	790, 1017
Eco24I	GRGCYC	2 cut(s)	186, 939
Eco47I	GGWCC	2 cut(s)	591, 1014
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	4 cut(s)	8, 656, 867, 1532
Eco88I	CYCGRG	1 cut(s)	938
EcoICRI	GAGCTC	1 cut(s)	184
EcoNI	CCTNNNNNAGG	2 cut(s)	1021, 1193
EcoO109I	RGGNCCY	1 cut(s)	1014
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	1116, 1266
EcoT14I	CCWWGG	2 cut(s)	790, 1017
EcoT22I	ATGCAT	2 cut(s)	1560, 1713
EcoT38I	GRGCYC	2 cut(s)	186, 939
ErhI	CCWWGG	2 cut(s)	790, 1017
FaeI	CATG	9 cut(s)	737, 863, 1295, 1310, 1429, 1558, 1568, 1715, 1851
FalI	AAGNNNNNCTT	2 cut(s)	673, 705
FaqI	GGGAC	1 cut(s)	1235
FatI	CATG	9 cut(s)	733, 859, 1291, 1306, 1425, 1554, 1564, 1711, 1847
FauI	CCCGC	3 cut(s)	325, 877, 925
FbaI	TGATCA	1 cut(s)	1239
FblI	GTMKAC	1 cut(s)	1513
Fnu4HI	GCNGC	2 cut(s)	60, 111
FokI	GGATG	7 cut(s)	536, 542, 1039, 1259, 1424, 1454, 1843
FriOI	GRGCYC	2 cut(s)	186, 939
Fsp4HI	GCNGC	2 cut(s)	60, 111
FspBI	CTAG	1 cut(s)	798
GluI	GCNGC	2 cut(s)	60, 111
HaeIII	GGCC	4 cut(s)	77, 821, 858, 1598
HapII	CCGG	2 cut(s)	102, 1720
HgaI	GACGC	1 cut(s)	1843
Hin1II	CATG	9 cut(s)	737, 863, 1295, 1310, 1429, 1558, 1568, 1715, 1851
HincII	GTYRAC	2 cut(s)	915, 1514
HindII	GTYRAC	2 cut(s)	915, 1514
HindIII	AAGCTT	2 cut(s)	849, 1031
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	2 cut(s)	102, 1720
HphI	GGTGA	7 cut(s)	329, 455, 562, 620, 1132, 1262, 1328
Hpy166II	GTNNAC	5 cut(s)	144, 748, 915, 1514, 1677
Hpy188I	TCNGA	7 cut(s)	122, 229, 412, 847, 1419, 1500, 1707
Hpy188III	TCNNGA	5 cut(s)	213, 240, 1154, 1458, 1720
Hpy8I	GTNNAC	5 cut(s)	144, 748, 915, 1514, 1677
HpyAV	CCTTC	7 cut(s)	416, 506, 599, 997, 1135, 1348, 1721
HpyCH4III	ACNGT	4 cut(s)	1070, 1177, 1585, 1756
HpyF10VI	GCNNNNNNNGC	6 cut(s)	574, 730, 766, 835, 904, 1303
HpyF3I	CTNAG	7 cut(s)	119, 159, 346, 578, 669, 780, 809
Hsp92II	CATG	9 cut(s)	737, 863, 1295, 1310, 1429, 1558, 1568, 1715, 1851
Kpn2I	TCCGGA	1 cut(s)	1719
Ksp22I	TGATCA	1 cut(s)	1239
Kzo9I	GATC	4 cut(s)	319, 1090, 1239, 1528
LmnI	GCTCC	3 cut(s)	107, 189, 1156
Lsp1109I	GCAGC	2 cut(s)	46, 122
LweI	GCATC	6 cut(s)	912, 1099, 1105, 1476, 1533, 1698
MabI	ACCWGGT	1 cut(s)	1266
MaeI	CTAG	1 cut(s)	798
MaeIII	GTNAC	7 cut(s)	64, 624, 1057, 1166, 1257, 1270, 1480
MalI	GATC	4 cut(s)	321, 1092, 1241, 1530
MbiI	CCGCTC	1 cut(s)	884
MboI	GATC	4 cut(s)	319, 1090, 1239, 1528
MboII	GAAGA	9 cut(s)	14, 431, 706, 1118, 1213, 1246, 1361, 1679, 1836
MfeI	CAATTG	1 cut(s)	1389
MhlI	GDGCHC	3 cut(s)	186, 939, 1153
MlsI	TGGCCA	1 cut(s)	858
MluI	ACGCGT	1 cut(s)	900
MluNI	TGGCCA	1 cut(s)	858
MmeI	TCCRAC	3 cut(s)	978, 1397, 1506
Mox20I	TGGCCA	1 cut(s)	858
Mph1103I	ATGCAT	2 cut(s)	1560, 1713
MroI	TCCGGA	1 cut(s)	1719
MscI	TGGCCA	1 cut(s)	858
MseI	TTAA	9 cut(s)	170, 455, 614, 815, 984, 1337, 1604, 1770, 1803
MslI	CAYNNNNRTG	2 cut(s)	1311, 1563
Msp20I	TGGCCA	1 cut(s)	858
MspI	CCGG	2 cut(s)	102, 1720
MspR9I	CCNGG	2 cut(s)	1118, 1268
MunI	CAATTG	1 cut(s)	1389
MvaI	CCWGG	2 cut(s)	1118, 1268
MvnI	CGCG	1 cut(s)	902
MwoI	GCNNNNNNNGC	6 cut(s)	574, 730, 766, 835, 904, 1303
NdeII	GATC	4 cut(s)	319, 1090, 1239, 1528
NlaIII	CATG	9 cut(s)	737, 863, 1295, 1310, 1429, 1558, 1568, 1715, 1851
NlaIV	GGNNCC	2 cut(s)	593, 1718
NmeAIII	GCCGAG	2 cut(s)	94, 1161
NmuCI	GTSAC	2 cut(s)	1057, 1270
NsiI	ATGCAT	2 cut(s)	1560, 1713
NspI	RCATGY	1 cut(s)	1558
NspV	TTCGAA	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	938
PfeI	GAWTC	1 cut(s)	281
PflFI	GACNNNGTC	1 cut(s)	1268
PflMI	CCANNNNNTGG	1 cut(s)	865
PkrI	GCNGC	2 cut(s)	61, 112
PpuMI	RGGWCCY	1 cut(s)	1014
PshBI	ATTAAT	1 cut(s)	1803
PsiI	TTATAA	2 cut(s)	1065, 1278
Psp124BI	GAGCTC	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	1014
Psp6I	CCWGG	2 cut(s)	1116, 1266
PspGI	CCWGG	2 cut(s)	1116, 1266
PspN4I	GGNNCC	2 cut(s)	593, 1718
PspPI	GGNCC	3 cut(s)	591, 820, 1014
PspPPI	RGGWCCY	1 cut(s)	1014
PspXI	VCTCGAGB	1 cut(s)	938
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	1268
RsaI	GTAC	3 cut(s)	164, 749, 1395
RsaNI	GTAC	3 cut(s)	163, 748, 1394
RseI	CAYNNNNRTG	2 cut(s)	1311, 1563
SacI	GAGCTC	1 cut(s)	186
SalI	GTCGAC	1 cut(s)	1512
SaqAI	TTAA	9 cut(s)	170, 455, 614, 815, 984, 1337, 1604, 1770, 1803
SatI	GCNGC	2 cut(s)	60, 111
Sau3AI	GATC	4 cut(s)	319, 1090, 1239, 1528
Sau96I	GGNCC	3 cut(s)	591, 820, 1014
ScrFI	CCNGG	2 cut(s)	1118, 1268
SduI	GDGCHC	3 cut(s)	186, 939, 1153
SexAI	ACCWGGT	1 cut(s)	1266
SfaNI	GCATC	6 cut(s)	912, 1099, 1105, 1476, 1533, 1698
SfcI	CTRYAG	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	938
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	2 cut(s)	591, 1014
SlaI	CTCGAG	1 cut(s)	938
SmiMI	CAYNNNNRTG	2 cut(s)	1311, 1563
SmlI	CTYRAG	5 cut(s)	211, 220, 761, 938, 1456
SmoI	CTYRAG	5 cut(s)	211, 220, 761, 938, 1456
SsiI	CCGC	5 cut(s)	332, 724, 829, 884, 932
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	798
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	1116, 1266
StyI	CCWWGG	2 cut(s)	790, 1017
TaaI	ACNGT	4 cut(s)	1070, 1177, 1585, 1756
TaqI	TCGA	5 cut(s)	97, 322, 880, 939, 1513
TatI	WGTACW	2 cut(s)	747, 1393
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	9 cut(s)	170, 455, 614, 815, 984, 1337, 1604, 1770, 1803
Tru9I	TTAA	9 cut(s)	170, 455, 614, 815, 984, 1337, 1604, 1770, 1803
TscAI	CASTG	2 cut(s)	725, 1495
TseFI	GTSAC	2 cut(s)	1057, 1270
TseI	GCWGC	2 cut(s)	59, 110
Tsp45I	GTSAC	2 cut(s)	1057, 1270
TspDTI	ATGAA	7 cut(s)	546, 693, 1043, 1143, 1389, 1667, 1836
TspRI	CASTG	2 cut(s)	725, 1495
Tth111I	GACNNNGTC	1 cut(s)	1268
Van91I	CCANNNNNTGG	1 cut(s)	865
VpaK11BI	GGWCC	2 cut(s)	591, 1014
VspI	ATTAAT	1 cut(s)	1803
XagI	CCTNNNNNAGG	2 cut(s)	1021, 1193
XapI	RAATTY	3 cut(s)	466, 496, 1331
XceI	RCATGY	1 cut(s)	1558
XhoI	CTCGAG	1 cut(s)	938
XmiI	GTMKAC	1 cut(s)	1513
XspI	CTAG	1 cut(s)	798
Zsp2I	ATGCAT	2 cut(s)	1560, 1713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.