Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002968

Physical Location & Seq

Genomic Coordinates Reverse (-)

10307807 .. 10311147

Gene Structure 3341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29534

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

ATGGCCCGTAGGCGGATTGAGATTCGTTCTGAAGCTTTTTGCCATGTGATGGTGTCATATAGTCGAGCGGGCAAGTTGAGGCACGCGTTGCGTGTGTTGACTTTGATGCAGAAGGCGGGGCTTGAGCTTGATTTGTCAATGTGCAATACTGCAATTTATGTTTTGGTTAAGGGTAATAAGTTGGAGAAGGCGTTGAGGACCTTGGAAAGGATGAAGCTTGTTGGGATTGCACCAAATGTAGTCACTTATAACTGTTTGATAAAGGGGTATTGTGATCTGCATCGTGTCGAAGATGCAATCCAGGTGATTGATGAAATGCCGAGGAAGGGGTGTGCTCCTGATAAAGTTAGTTACTATACTGTGATGGATTTCCTTTGTAAGGAGAAGAGGGTCAAAGAAGTGAGGGACTTGATGGAGAAGATGATCAAGGATGGTGGGTTGTTACCAGACCAGGTCACGTATAATAATCTTGTCCATGTGCTTTGTAAGCATGGCTATGGTGATGAGGCACTTGAATTTTTAAGGGAAGCCGAAGAGAAGGGATTTCGGTTTGATAAGGTTGGGTATAGTGCAATTGTACATTCATTTTGTAAGGATGGTCGGACTGACATGGCAAAAGAAATTGTTAGTGAAATGTTCTCAAAAGGTTGCATCCCAGATGTTGTAACATACACTGCTGTTCTGAATGGGTATTGTCGACTTGGGAAGTTGGATCAAGCTAAAAAGATGCTTCAGCACATGCATAAGCATGGTTGCAAGCCAAATACTGTATCATATACGGCCTTATTAAATGGGCTTTGTCATGGTGGGAACTCATTGGAGGCAAGAGAGATGATGAACACGAGTGAGGAAGAATGGTGGACACCAAATGCCATCACTTATAGTGTTCTGATGCATGGGTTCCGGAGGGAAGGGAAATTGGTTGAGGCTTGTGATACTGTCAAAGAGATGATTAAAAAGGGATTTTTCCCTACCCCAGTTGAAATTAATCTCTTAATTCAGTCTCTTTGCCAAGAGTGGAAGATGGATGAGGCTAAGCGTTTCATGGAGGAGTGTCTAAATAAAGGTTGTGCTGTTAATGTTGTCAATTTTACTACTGTTATTCATGGATATTGTCAAAAAGATGACTTGGAAGCTGCTCTATCGTTGCTTGATGACATGTATCTCAGCAATAAACACCCAGATGCAGTAACTTATACAGCAATGATCAGTGCATTGGGAAAGAAAGGTAGAATACAAGACGCAACTGAACTTATGATGAAGATGCTGAATAAGGGTATTGACCCGACTCCCGTCACATACAGGACGATCATCCATTGGTATTGTAAGATGAGTAGGGTGGATGATTTGTTGAAATTATTGGAGCAGATGTTCTTAAGGCAAAACTGCAAAACAGCATATAATCAAGTGATTGAGAAGCTTTGTAGTTTTGGGAACTTTGAGGACGCTGATAAACTATTGGGTAAGGTGTTGAGAACAGCTTCAAGAGTTGATGCTAAAACATGCCATGTTGTTATGGATGGTTATTTGAGAAAAGGGATTCCTCTGTCAGCATACAAAGTGGCTTGTCGAATGTTCAATCGGAATCTGATTCCTGATTTCAAGTTGTGTGAGAAGGTGACGAAGAGACTGATGCTAGAAGGAAACTCCAAAGAGGCAGACAACCTTATGTTACGGTTTGTTGATCGTGGATGCATATCAAACCAACATCAGGAACATCTGGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

576

Amino Acids

65.81

Weight (kDa)

8.63

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	13 - 176	3.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	32 - 90	3.1e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	46 - 92	1.7e-11	PPR repeat family
PPR_1	PF12854	75 - 106	7.6e-12	PPR repeat
PPR_2	PF13041	78 - 123	2e-15	PPR repeat family
PPR	PF01535	81 - 111	7.3e-08	PPR repeat
PPR_1	PF12854	146 - 176	1.1e-08	PPR repeat
PPR_2	PF13041	149 - 198	3.7e-10	PPR repeat family
PPR	PF01535	152 - 182	9.7e-07	PPR repeat
PPR_long	PF17177	171 - 304	1.2e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	174 - 229	6.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	180 - 212	5.4e-06	PPR repeat
PPR_2	PF13041	186 - 233	3.9e-13	PPR repeat family
PPR_3	PF13812	208 - 264	2.9e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	215 - 247	6.7e-12	PPR repeat
PPR_2	PF13041	219 - 268	3.3e-19	PPR repeat family
PPR	PF01535	222 - 252	5.3e-08	PPR repeat
PPR_1	PF12854	250 - 280	2e-06	PPR repeat
PPR_2	PF13041	289 - 325	8.1e-06	PPR repeat family
TPR_24	PF23276	290 - 384	6.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	355 - 387	2.9e-08	PPR repeat
PPR_2	PF13041	360 - 408	1.2e-13	PPR repeat family
PPR_3	PF13812	382 - 443	1.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	393 - 422	3.6e-07	PPR repeat
PPR_2	PF13041	394 - 443	1.9e-14	PPR repeat family
PPR	PF01535	397 - 427	4e-07	PPR repeat
PPR_1	PF12854	425 - 457	4.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30290 AT1G30290
fragaria_vesca	FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050
malus_domestica	MD10G1258300.v1.1
prunus_persica	Prupe.4G085500_v2.0.a1 Prupe.4G085500_v2.0.a1
pyrus_communis	pycom05g26000 pycom10g21460
rosa_chinensis	RchiOBHm_Chr3g0490541 RchiOBHm_Chr3g0490551 RchiOBHm_Chr5g0014911
rosa_laevigata	RLG00000022885 RLG00000032150
rosa_multiflora	Rmu_sc0003862.1_g000007 Rmu_sc0013610.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061660 Rroxscaffold_6G00393420
rosa_rugosa	Rorug03G0243900 Rorug05G0021400
rosa_samantha	Rh3AG293300 Rh3AG293400 Rh3BG329800 Rh3CG327300 Rh3CG327400 Rh3DG326700 Rh5AG117100 Rh5BG114100 Rh5CG125600 Rh5DG113500
rosa_wichuraiana	Rw3G025970 Rw5G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	697
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	903
AciI	CCGC	3 cut(s)	13, 68, 116
AclWI	GGATC	1 cut(s)	720
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	2 cut(s)	51, 716
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	6 cut(s)	12, 49, 207, 326, 379, 1711
AflII	CTTAAG	1 cut(s)	1375
AflIII	ACRYGT	2 cut(s)	84, 1158
AgsI	TTSAA	6 cut(s)	515, 983, 1354, 1485, 1579, 1603
AjnI	CCWGG	2 cut(s)	300, 450
AloI	GAACNNNNNNTCC	2 cut(s)	1355, 1387
AluBI	AGCT	8 cut(s)	35, 127, 217, 719, 1136, 1420, 1481, 1728
AluI	AGCT	8 cut(s)	35, 127, 217, 719, 1136, 1420, 1481, 1728
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	1008, 1621
AlwI	GGATC	1 cut(s)	720
Aor13HI	TCCGGA	1 cut(s)	903
AoxI	GGCC	2 cut(s)	3, 780
ApeKI	GCWGC	1 cut(s)	1136
ApoI	RAATTY	1 cut(s)	515
AseI	ATTAAT	1 cut(s)	987
Asp700I	GAANNNNTTC	1 cut(s)	1480
AspS9I	GGNCC	2 cut(s)	4, 198
AsuHPI	GGTGA	3 cut(s)	316, 512, 1630
AvaII	GGWCC	1 cut(s)	198
BauI	CACGAG	1 cut(s)	841
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	1123
BccI	CCATC	8 cut(s)	43, 358, 406, 425, 590, 881, 1018, 1514
BceAI	ACGGC	1 cut(s)	795
BciT130I	CCWGG	2 cut(s)	302, 452
BclI	TGATCA	2 cut(s)	423, 1206
BcoDI	GTCTC	2 cut(s)	1008, 1621
BfaI	CTAG	1 cut(s)	1637
BfrI	CTTAAG	1 cut(s)	1375
BisI	GCNGC	1 cut(s)	1137
BlpI	GCTNAGC	1 cut(s)	1035
BlsI	GCNGC	1 cut(s)	1138
Bme1390I	CCNGG	2 cut(s)	302, 452
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	4, 198
BmiI	GGNNCC	1 cut(s)	902
BmrFI	CCNGG	2 cut(s)	302, 452
BmrI	ACTGGG	1 cut(s)	971
BmuI	ACTGGG	1 cut(s)	971
BoxI	GACNNNNGTC	1 cut(s)	1292
Bpu1102I	GCTNAGC	1 cut(s)	1035
BpuEI	CTTGAG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	459
BsaBI	GATNNNNATC	2 cut(s)	279, 1696
BsaJI	CCNNGG	2 cut(s)	201, 320
BsaWI	WCCGGW	1 cut(s)	903
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 1355, 1385
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 49, 207, 326, 379, 1711
Bse1I	ACTGG	1 cut(s)	977
Bse3DI	GCAATG	1 cut(s)	1209
Bse8I	GATNNNNATC	2 cut(s)	279, 1696
BseAI	TCCGGA	1 cut(s)	903
BseBI	CCWGG	2 cut(s)	302, 452
BseDI	CCNNGG	2 cut(s)	201, 320
BseGI	GGATG	9 cut(s)	216, 436, 601, 651, 1033, 1311, 1348, 1525, 1697
BseJI	GATNNNNATC	2 cut(s)	279, 1696
BseLI	CCNNNNNNNGG	6 cut(s)	12, 49, 207, 326, 379, 1711
BseMI	GCAATG	1 cut(s)	1209
BseMII	CTCAG	1 cut(s)	1180
BseNI	ACTGG	1 cut(s)	977
BseRI	GAGGAG	1 cut(s)	1064
BseXI	GCAGC	1 cut(s)	1123
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	5, 782
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	904
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	6 cut(s)	12, 49, 207, 326, 379, 1711
BsmAI	GTCTC	2 cut(s)	1008, 1621
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	5, 782
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp13I	TCCGGA	1 cut(s)	903
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	6 cut(s)	274, 423, 712, 1206, 1308, 1684
Bsp1720I	GCTNAGC	1 cut(s)	1035
BspACI	CCGC	3 cut(s)	13, 68, 116
BspANI	GGCC	2 cut(s)	5, 782
BspCNI	CTCAG	1 cut(s)	1179
BspEI	TCCGGA	1 cut(s)	903
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	902
BspPI	GGATC	1 cut(s)	720
BspTI	CTTAAG	1 cut(s)	1375
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	1209
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	977
BssECI	CCNNGG	2 cut(s)	201, 320
BssMI	GATC	6 cut(s)	274, 423, 712, 1206, 1308, 1684
BssSI	CACGAG	1 cut(s)	841
BssT1I	CCWWGG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	841
Bst2UI	CCWGG	2 cut(s)	302, 452
Bst4CI	ACNGT	6 cut(s)	254, 361, 769, 940, 1099, 1677
Bst6I	CTCTTC	3 cut(s)	380, 528, 1619
BstAFI	CTTAAG	1 cut(s)	1375
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstAUI	TGTACA	1 cut(s)	577
BstBAI	YACGTR	1 cut(s)	459
BstC8I	GCNNGC	3 cut(s)	70, 84, 758
BstDEI	CTNAG	2 cut(s)	1035, 1166
BstENI	CCTNNNNNAGG	2 cut(s)	205, 377
BstF5I	GGATG	9 cut(s)	216, 436, 601, 651, 1033, 1311, 1348, 1525, 1697
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	6 cut(s)	277, 426, 715, 1209, 1311, 1687
BstMAI	GTCTC	2 cut(s)	1008, 1621
BstMBI	GATC	6 cut(s)	274, 423, 712, 1206, 1308, 1684
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 487
BstNI	CCWGG	2 cut(s)	302, 452
BstNSI	RCATGY	3 cut(s)	742, 1162, 1506
BstPAI	GACNNNNGTC	1 cut(s)	1292
BstSCI	CCNGG	2 cut(s)	300, 450
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	1123
BsuRI	GGCC	2 cut(s)	5, 782
BtsCI	GGATG	9 cut(s)	216, 436, 601, 651, 1033, 1311, 1348, 1525, 1697
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	2 cut(s)	672, 1216
Cac8I	GCNNGC	3 cut(s)	70, 84, 758
Cfr13I	GGNCC	2 cut(s)	4, 198
CseI	GACGC	2 cut(s)	1250, 1454
CsiI	ACCWGGT	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	578
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	2 cut(s)	1035, 1166
DpnI	GATC	6 cut(s)	276, 425, 714, 1208, 1310, 1686
DpnII	GATC	6 cut(s)	274, 423, 712, 1206, 1308, 1684
Eam1104I	CTCTTC	3 cut(s)	380, 528, 1619
EarI	CTCTTC	3 cut(s)	380, 528, 1619
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	51, 716
EcoNI	CCTNNNNNAGG	2 cut(s)	205, 377
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	300, 450
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	3 cut(s)	744, 897, 1697
ErhI	CCWWGG	1 cut(s)	201
FaqI	GGGAC	1 cut(s)	419
FauI	CCCGC	2 cut(s)	61, 109
FbaI	TGATCA	2 cut(s)	423, 1206
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	1 cut(s)	1137
FokI	GGATG	9 cut(s)	223, 443, 608, 638, 1040, 1298, 1355, 1532, 1704
Fsp4HI	GCNGC	1 cut(s)	1137
FspBI	CTAG	1 cut(s)	1637
GluI	GCNGC	1 cut(s)	1137
HaeIII	GGCC	2 cut(s)	5, 782
HapII	CCGG	1 cut(s)	904
HgaI	GACGC	2 cut(s)	1250, 1454
HincII	GTYRAC	2 cut(s)	99, 698
HindII	GTYRAC	2 cut(s)	99, 698
HindIII	AAGCTT	3 cut(s)	33, 215, 1418
HinfI	GANTC	5 cut(s)	22, 1288, 1540, 1585, 1591
HpaII	CCGG	1 cut(s)	904
HphI	GGTGA	3 cut(s)	316, 512, 1630
Hpy166II	GTNNAC	3 cut(s)	99, 698, 861
Hpy188I	TCNGA	6 cut(s)	31, 603, 684, 891, 1584, 1590
Hpy188III	TCNNGA	6 cut(s)	338, 904, 1485, 1595, 1712, 1721
Hpy8I	GTNNAC	3 cut(s)	99, 698, 861
HpyAV	CCTTC	7 cut(s)	106, 181, 319, 532, 905, 1609, 1634
HpyCH4III	ACNGT	6 cut(s)	254, 361, 769, 940, 1099, 1677
HpyCH4IV	ACGT	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 487
HpyF3I	CTNAG	2 cut(s)	1035, 1166
HpySE526I	ACGT	1 cut(s)	458
Kpn2I	TCCGGA	1 cut(s)	903
Ksp22I	TGATCA	2 cut(s)	423, 1206
Kzo9I	GATC	6 cut(s)	274, 423, 712, 1206, 1308, 1684
LmnI	GCTCC	2 cut(s)	340, 1363
Lsp1109I	GCAGC	1 cut(s)	1123
MabI	ACCWGGT	1 cut(s)	450
MaeI	CTAG	1 cut(s)	1637
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	9 cut(s)	241, 350, 441, 454, 664, 1189, 1294, 1618, 1671
MalI	GATC	6 cut(s)	276, 425, 714, 1208, 1310, 1686
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	6 cut(s)	274, 423, 712, 1206, 1308, 1684
MboII	GAAGA	8 cut(s)	302, 397, 430, 545, 863, 1033, 1273, 1636
MfeI	CAATTG	1 cut(s)	573
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	9 cut(s)	153, 515, 573, 621, 917, 984, 996, 1087, 1355
MluI	ACGCGT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	1282
MmeI	TCCRAC	3 cut(s)	162, 581, 690
Mph1103I	ATGCAT	3 cut(s)	744, 897, 1697
MroI	TCCGGA	1 cut(s)	903
MroXI	GAANNNNTTC	1 cut(s)	1480
MseI	TTAA	8 cut(s)	168, 521, 788, 954, 987, 995, 1077, 1376
MslI	CAYNNNNRTG	3 cut(s)	495, 747, 1182
MspCI	CTTAAG	1 cut(s)	1375
MspI	CCGG	1 cut(s)	904
MspR9I	CCNGG	2 cut(s)	302, 452
MunI	CAATTG	1 cut(s)	573
MvaI	CCWGG	2 cut(s)	302, 452
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	88, 487
NdeII	GATC	6 cut(s)	274, 423, 712, 1206, 1308, 1684
NlaIV	GGNNCC	1 cut(s)	902
NmeAIII	GCCGAG	1 cut(s)	345
NmuCI	GTSAC	4 cut(s)	241, 454, 1294, 1618
NsiI	ATGCAT	3 cut(s)	744, 897, 1697
NspI	RCATGY	3 cut(s)	742, 1162, 1506
PciI	ACATGT	1 cut(s)	1158
PdmI	GAANNNNTTC	1 cut(s)	1480
PfeI	GAWTC	4 cut(s)	22, 1540, 1585, 1591
PflFI	GACNNNGTC	1 cut(s)	452
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	1138
PleI	GAGTC	1 cut(s)	1282
PpsI	GAGTC	1 cut(s)	1282
Ppu21I	YACGTR	1 cut(s)	459
PpuMI	RGGWCCY	1 cut(s)	198
PscI	ACATGT	1 cut(s)	1158
PshAI	GACNNNNGTC	1 cut(s)	1292
PshBI	ATTAAT	1 cut(s)	987
PsiI	TTATAA	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	300, 450
PspGI	CCWGG	2 cut(s)	300, 450
PspN4I	GGNNCC	1 cut(s)	902
PspPI	GGNCC	2 cut(s)	4, 198
PspPPI	RGGWCCY	1 cut(s)	198
PsyI	GACNNNGTC	1 cut(s)	452
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
RseI	CAYNNNNRTG	3 cut(s)	495, 747, 1182
SalI	GTCGAC	1 cut(s)	696
SaqAI	TTAA	8 cut(s)	168, 521, 788, 954, 987, 995, 1077, 1376
SatI	GCNGC	1 cut(s)	1137
Sau3AI	GATC	6 cut(s)	274, 423, 712, 1206, 1308, 1684
Sau96I	GGNCC	2 cut(s)	4, 198
SchI	GAGTC	1 cut(s)	1282
ScrFI	CCNGG	2 cut(s)	302, 452
SduI	GDGCHC	1 cut(s)	337
SexAI	ACCWGGT	1 cut(s)	450
SinI	GGWCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	3 cut(s)	495, 747, 1182
SmlI	CTYRAG	2 cut(s)	122, 1375
SmoI	CTYRAG	2 cut(s)	122, 1375
Sse9I	AATT	9 cut(s)	153, 515, 573, 621, 917, 984, 996, 1087, 1355
SsiI	CCGC	3 cut(s)	13, 68, 116
SspMI	CTAG	1 cut(s)	1637
StyD4I	CCNGG	2 cut(s)	300, 450
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	6 cut(s)	254, 361, 769, 940, 1099, 1677
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	4 cut(s)	64, 288, 697, 1570
TasI	AATT	9 cut(s)	153, 515, 573, 621, 917, 984, 996, 1087, 1355
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	4 cut(s)	22, 1540, 1585, 1591
Tru1I	TTAA	8 cut(s)	168, 521, 788, 954, 987, 995, 1077, 1376
Tru9I	TTAA	8 cut(s)	168, 521, 788, 954, 987, 995, 1077, 1376
TscAI	CASTG	2 cut(s)	679, 1216
TseFI	GTSAC	4 cut(s)	241, 454, 1294, 1618
TseI	GCWGC	1 cut(s)	1136
Tsp45I	GTSAC	4 cut(s)	241, 454, 1294, 1618
TspDTI	ATGAA	7 cut(s)	227, 327, 573, 851, 1033, 1094, 1274
TspRI	CASTG	2 cut(s)	679, 1216
Tth111I	GACNNNGTC	1 cut(s)	452
Van91I	CCANNNNNTGG	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	1375
VpaK11BI	GGWCC	1 cut(s)	198
VspI	ATTAAT	1 cut(s)	987
XagI	CCTNNNNNAGG	2 cut(s)	205, 377
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	3 cut(s)	742, 1162, 1506
XmiI	GTMKAC	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	1480
XspI	CTAG	1 cut(s)	1637
Zsp2I	ATGCAT	3 cut(s)	744, 897, 1697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.