Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000732

Physical Location & Seq

Genomic Coordinates Forward (+)

22782783 .. 22786229

Gene Structure 3447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTTAGAGGTAGAGTAAAAGGGAAGAAACAAAACATTATCACTGCTCGTGAGGATCCTGGGAGCTCAGAAGCGCATAAGATTCCACCAAACAGGAGAAGAGGAAGGCCACAAAAGCCTTTGAAGGATGATATTGGAGACGGAAAAACTCAGAAGATACAAGATGAGGATGAGAAAAGTCATATTTCTCGCGAAGACGTGAAAGACCACTCTAGTATAGAGAATGGCACAAAAAGGAAGAGAGACGCTCATGTCAATGAAAATTTGAACTCCATCCAAGAGGAGAACAGCATGGAAATAAAGTCAAGCCTTGATGATCCTACAGAGTCTGTTGGATTCCGACAAAGTGGGAGTAGGCGGAAAAACAAGCCTCACCGAGCTGCTGAAGCTGGTGTTCAGTGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

135

Amino Acids

15.24

Weight (kDa)

9.67

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000732)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica	Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis	pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis	RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata	RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora	Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa	Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha	Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana	Rw0G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AccII	CGCG	1 cut(s)	192
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	3 cut(s)	50, 63, 311
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	405
AgsI	TTSAA	2 cut(s)	124, 268
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	66, 380, 389
AluI	AGCT	3 cut(s)	66, 380, 389
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	132, 237
AlwI	GGATC	3 cut(s)	50, 63, 311
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	132, 237
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	201
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BsaJI	CCNNGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	3 cut(s)	133, 175, 273
BseMII	CTCAG	2 cut(s)	81, 164
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	132, 237
BsmBI	CGTCTC	2 cut(s)	132, 237
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	55, 316
Bsp68I	TCGCGA	1 cut(s)	192
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	80, 163
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	3 cut(s)	50, 63, 311
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	55, 316
BssSI	CACGAG	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	94, 233
BstDEI	CTNAG	2 cut(s)	67, 150
BstF5I	GGATG	3 cut(s)	133, 175, 273
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	58, 319
BstMAI	GTCTC	2 cut(s)	132, 237
BstMBI	GATC	2 cut(s)	55, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 386
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	133, 175, 273
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 404
BtuMI	TCGCGA	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	329
CfoI	GCGC	1 cut(s)	76
CseI	GACGC	1 cut(s)	254
CviAII	CATG	2 cut(s)	251, 292
CviJI	RGCY	7 cut(s)	66, 109, 118, 309, 370, 380, 389
CviKI_1	RGCY	7 cut(s)	66, 109, 118, 309, 370, 380, 389
DdeI	CTNAG	2 cut(s)	67, 150
DpnI	GATC	2 cut(s)	57, 318
DpnII	GATC	2 cut(s)	55, 316
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	94, 233
EarI	CTCTTC	2 cut(s)	94, 233
EciI	GGCGGA	1 cut(s)	373
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	68
Esp3I	CGTCTC	2 cut(s)	132, 237
FaeI	CATG	2 cut(s)	254, 295
FaiI	YATR	5 cut(s)	78, 183, 218, 252, 293
FatI	CATG	2 cut(s)	250, 291
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	3 cut(s)	140, 182, 260
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	109
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	254, 295
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	3 cut(s)	82, 326, 336
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	3 cut(s)	70, 153, 341
Hpy188III	TCNNGA	2 cut(s)	50, 191
HpyAV	CCTTC	2 cut(s)	99, 118
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 386
HpyF3I	CTNAG	2 cut(s)	67, 150
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	254, 295
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	55, 316
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	4 cut(s)	45, 72, 79, 375
Lsp1109I	GCAGC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	198
MalI	GATC	2 cut(s)	57, 318
MboI	GATC	2 cut(s)	55, 316
MboII	GAAGA	5 cut(s)	37, 111, 166, 206, 250
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	313, 364
MnlI	CCTC	5 cut(s)	46, 95, 160, 274, 381
MslI	CAYNNNNRTG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	115, 386
NdeII	GATC	2 cut(s)	55, 316
NlaIII	CATG	2 cut(s)	254, 295
NlaIV	GGNNCC	1 cut(s)	57
NruI	TCGCGA	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	82, 336
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	55
RruI	TCGCGA	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	68
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	2 cut(s)	55, 316
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	5 cut(s)	13, 68, 201, 382, 391
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	358
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	58
TaiI	ACGT	1 cut(s)	201
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	82, 336
TscAI	CASTG	2 cut(s)	49, 404
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	49, 404
XapI	RAATTY	1 cut(s)	262
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.