Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000732

Physical Location & Seq

Genomic Coordinates Forward (+)

3762120 .. 3764339

Gene Structure 2220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGCCGGAGAGACAACCTGATTGGTACTGGTCCATTCACTAAGGATAAGGGTAAGGGCACTGTTCCGTACACTAGGCAGCAGATCATAGATATTTTCAAAGGTTTTGACAAGAACGGAGACGGCAAGCTCTCCTGGGATGAGGTGAAGGCTGCGTTCGCTAAACTGGGGGCGCTTGTGCCCGACTACAGAGCTTGGCGAGGACGAAGGTGTGCCGATGCCGACAAGGATGGCTTCATCTCTCTCGAGACCGAGCTCAATGAACTTGTCACCTATACCCTGGAACTAGAGTATACACAGAAACGCATGAGTGTCCTGGTGTTATCCGACTACTACAAGCTAGATTATATACATCTATCTATGGCGATTAAGAGCAAGTGTGTCGCTAGTGATGGCAAACGTGTTATGACCACCGAGGAGTTGAAGAAATGGCTGAAGAAATTTGATACTGACAAAGATGGCCGTATAAGCAAAGAGGAACTCCGCCAGGCTATCCGCTCCACCGGCGGACGCTTTGCCACGTTCAAGAGCAGGCGTGGGTTACGATCTGCAGATGTCAATCAAGACGGATACATAGGTGAAGAAGAACTCGACAACCTTGTAGAGTTTGCACAGAAGCATTTGGGTGTCAGGATCATACACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

215

Amino Acids

24.59

Weight (kDa)

9.16

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	29 - 56	1.3e-06	EF hand domain
EF-hand_6	PF13405	29 - 57	4.1e-07	EF-hand domain
EF-hand_7	PF13499	73 - 165	1.7e-08	EF-hand domain pair
EF-hand_1	PF00036	140 - 167	1.6e-07	EF hand domain
EF-hand_6	PF13405	140 - 169	1.3e-07	EF-hand domain
EF-hand_5	PF13202	141 - 163	3.7e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000732)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica	Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis	pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis	RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata	RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora	Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa	Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha	Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana	Rw0G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	293
AciI	CCGC	3 cut(s)	484, 496, 507
AclWI	GGATC	1 cut(s)	641
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	28, 71
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	3 cut(s)	100, 424, 526
AjnI	CCWGG	4 cut(s)	134, 279, 315, 486
AluBI	AGCT	4 cut(s)	130, 194, 256, 340
AluI	AGCT	4 cut(s)	130, 194, 256, 340
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	6, 114, 242
AlwI	GGATC	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	4, 460
ApeKI	GCWGC	2 cut(s)	79, 152
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	4, 32
AsuHPI	GGTGA	3 cut(s)	157, 262, 590
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	32
BaeGI	GKGCMC	2 cut(s)	62, 183
BaeI	ACNNNNGTAYC	2 cut(s)	562, 595
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	91, 139
BccI	CCATC	3 cut(s)	224, 386, 452
BceAI	ACGGC	2 cut(s)	139, 447
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BciT130I	CCWGG	4 cut(s)	136, 281, 317, 488
BciVI	GTATCC	1 cut(s)	563
BcoDI	GTCTC	3 cut(s)	6, 114, 242
BfaI	CTAG	4 cut(s)	75, 287, 341, 387
BfmI	CTRYAG	2 cut(s)	187, 549
BfoI	RGCGCY	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	2 cut(s)	80, 153
BlsI	GCNGC	2 cut(s)	81, 154
Bme1390I	CCNGG	4 cut(s)	136, 281, 317, 488
Bme18I	GGWCC	1 cut(s)	32
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	4, 32
BmrFI	CCNGG	4 cut(s)	136, 281, 317, 488
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	135, 279, 414
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	34, 171
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	4 cut(s)	136, 281, 317, 488
BseDI	CCNNGG	3 cut(s)	135, 279, 414
BseGI	GGATG	2 cut(s)	145, 235
BseJI	GATNNNNATC	1 cut(s)	558
BseNI	ACTGG	2 cut(s)	34, 171
BseRI	GAGGAG	1 cut(s)	431
BseSI	GKGCMC	2 cut(s)	62, 183
BseXI	GCAGC	2 cut(s)	91, 139
BshFI	GGCC	2 cut(s)	6, 462
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	7, 504
BsmAI	GTCTC	3 cut(s)	6, 114, 242
BsmBI	CGTCTC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	6, 462
Bso31I	GGTCTC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	3 cut(s)	62, 183, 258
Bsp143I	GATC	3 cut(s)	84, 545, 633
BspACI	CCGC	3 cut(s)	484, 496, 507
BspANI	GGCC	2 cut(s)	6, 462
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	1 cut(s)	641
BspTNI	GGTCTC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	34, 171
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	3 cut(s)	135, 279, 414
BssMI	GATC	3 cut(s)	84, 545, 633
BssNAI	GTATAC	1 cut(s)	294
Bst1107I	GTATAC	1 cut(s)	294
Bst2UI	CCWGG	4 cut(s)	136, 281, 317, 488
Bst4CI	ACNGT	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	128, 533
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	145, 235
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	3 cut(s)	87, 548, 636
BstMAI	GTCTC	3 cut(s)	6, 114, 242
BstMBI	GATC	3 cut(s)	84, 545, 633
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 468, 504
BstNI	CCWGG	4 cut(s)	136, 281, 317, 488
BstSCI	CCNGG	4 cut(s)	134, 279, 315, 486
BstSFI	CTRYAG	2 cut(s)	187, 549
BstSLI	GKGCMC	2 cut(s)	62, 183
BstV1I	GCAGC	2 cut(s)	91, 139
BstZ17I	GTATAC	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	6, 462
BtsCI	GGATG	2 cut(s)	145, 235
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	128, 533
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	2 cut(s)	4, 32
CseI	GACGC	1 cut(s)	519
Csp6I	GTAC	2 cut(s)	27, 70
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	2 cut(s)	27, 70
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	3 cut(s)	86, 547, 635
DpnII	GATC	3 cut(s)	84, 545, 633
EaeI	YGGCCR	1 cut(s)	460
EciI	GGCGGA	2 cut(s)	473, 522
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	256
EcoRII	CCWGG	4 cut(s)	134, 279, 315, 486
EcoT38I	GRGCYC	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	1 cut(s)	310
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FatI	CATG	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	2 cut(s)	80, 153
FokI	GGATG	2 cut(s)	152, 242
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	80, 153
FspBI	CTAG	4 cut(s)	75, 287, 341, 387
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	80, 153
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	6, 462
HapII	CCGG	2 cut(s)	7, 504
HgaI	GACGC	1 cut(s)	519
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HpaII	CCGG	2 cut(s)	7, 504
HphI	GGTGA	3 cut(s)	157, 262, 590
Hpy166II	GTNNAC	2 cut(s)	72, 294
Hpy188I	TCNGA	2 cut(s)	328, 647
Hpy188III	TCNNGA	5 cut(s)	245, 247, 526, 563, 631
Hpy8I	GTNNAC	2 cut(s)	72, 294
HpyAV	CCTTC	2 cut(s)	142, 201
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	2 cut(s)	400, 521
HpyCH4V	TGCA	2 cut(s)	551, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 468, 504
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	400, 521
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	3 cut(s)	84, 545, 633
LmnI	GCTCC	1 cut(s)	503
Lsp1109I	GCAGC	2 cut(s)	91, 139
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	4 cut(s)	75, 287, 341, 387
MaeII	ACGT	2 cut(s)	400, 521
MaeIII	GTNAC	2 cut(s)	268, 540
MalI	GATC	3 cut(s)	86, 547, 635
MbiI	CCGCTC	1 cut(s)	498
MboI	GATC	3 cut(s)	84, 545, 633
MboII	GAAGA	4 cut(s)	436, 448, 593, 596
MhlI	GDGCHC	3 cut(s)	62, 183, 258
MluCI	AATT	1 cut(s)	440
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	136, 194, 409, 469
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	624
MspI	CCGG	2 cut(s)	7, 504
MspR9I	CCNGG	4 cut(s)	136, 281, 317, 488
MvaI	CCWGG	4 cut(s)	136, 281, 317, 488
MwoI	GCNNNNNNNGC	3 cut(s)	158, 468, 504
NdeII	GATC	3 cut(s)	84, 545, 633
NlaIII	CATG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	268
PaeR7I	CTCGAG	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	81, 154
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	4 cut(s)	134, 279, 315, 486
PspGI	CCWGG	4 cut(s)	134, 279, 315, 486
PspPI	GGNCC	2 cut(s)	4, 32
PstI	CTGCAG	1 cut(s)	553
RsaI	GTAC	2 cut(s)	28, 71
RsaNI	GTAC	2 cut(s)	27, 70
RseI	CAYNNNNRTG	1 cut(s)	624
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	80, 153
Sau3AI	GATC	3 cut(s)	84, 545, 633
Sau96I	GGNCC	2 cut(s)	4, 32
ScrFI	CCNGG	4 cut(s)	136, 281, 317, 488
SduI	GDGCHC	3 cut(s)	62, 183, 258
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	2 cut(s)	187, 549
Sfr274I	CTCGAG	1 cut(s)	245
SgrAI	CRCCGGYG	1 cut(s)	503
SinI	GGWCC	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	440
SsiI	CCGC	3 cut(s)	484, 496, 507
SspMI	CTAG	4 cut(s)	75, 287, 341, 387
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	4 cut(s)	134, 279, 315, 486
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	2 cut(s)	403, 524
TaqI	TCGA	2 cut(s)	246, 591
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	79, 152
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	226, 276
TspGWI	ACGGA	3 cut(s)	57, 132, 582
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	293
XspI	CTAG	4 cut(s)	75, 287, 341, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.