RchiOBHm_Chr6g0307631

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000732
Physical Location & Seq
Reverse (-)
65906809 .. 65907172
364 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27658

Sequence Viewer

Length: 303 bp
ATGGGGCGGAAAGACCAGACGAAGCCTCAGAAGCCTGAGATTATGCAAAAGGGTGTTCCGTACACTAGGCAGCAGATCATAGATATTTTCAAAGGTTATGACAAGAACGGAGACGGCAAGCTCTCCTGGGATGAGGTGAAGGCTGCGTTCGCTAAACTCGGGGCGCTTTTGCCCGACTACAGAGCTTGGCGAGGACGAAGGTGTGCCGATGCCGACAAGGATGGCTTCATCTCTCTCGAGACGGAGCTCAATGAACTAGTCACCTATACCCTGGAACTCAAGTATACACCGCGCAGTAATTAA

Protein Analysis

100

Amino Acids

11.5

Weight (kDa)

9.01

Isoelectric Point (pI)

14.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 24 - 80 3.2e-07 EF-hand domain pair
EF-hand_1 PF00036 26 - 53 5.7e-07 EF hand domain
EF-hand_6 PF13405 26 - 54 1.6e-07 EF-hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 284
AccII CGCG 1 cut(s) 292
AciI CCGC 2 cut(s) 7, 290
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 1 cut(s) 91
AhlI ACTAGT 1 cut(s) 256
AjnI CCWGG 2 cut(s) 125, 270
AluBI AGCT 3 cut(s) 121, 185, 247
AluI AGCT 3 cut(s) 121, 185, 247
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 2 cut(s) 105, 233
Ama87I CYCGRG 2 cut(s) 158, 236
ApeKI GCWGC 2 cut(s) 70, 143
AspLEI GCGC 2 cut(s) 166, 294
AsuHPI GGTGA 2 cut(s) 148, 253
AvaI CYCGRG 2 cut(s) 158, 236
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 82, 130
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 2 cut(s) 127, 272
BcoDI GTCTC 2 cut(s) 105, 233
BcuI ACTAGT 1 cut(s) 256
BfaI CTAG 2 cut(s) 66, 257
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 167
BisI GCNGC 2 cut(s) 71, 144
BlsI GCNGC 2 cut(s) 72, 145
Bme1390I CCNGG 2 cut(s) 127, 272
BmeT110I CYCGRG 2 cut(s) 158, 236
BmrFI CCNGG 2 cut(s) 127, 272
BmsI GCATC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 126, 270
BseBI CCWGG 2 cut(s) 127, 272
BseDI CCNNGG 2 cut(s) 126, 270
BseGI GGATG 2 cut(s) 136, 226
BseMII CTCAG 2 cut(s) 27, 41
BseXI GCAGC 2 cut(s) 82, 130
Bsh1236I CGCG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 2 cut(s) 158, 236
BsmAI GTCTC 2 cut(s) 105, 233
BsmBI CGTCTC 2 cut(s) 105, 233
BsoBI CYCGRG 2 cut(s) 158, 236
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 2 cut(s) 7, 290
BspCNI CTCAG 2 cut(s) 28, 40
BspFNI CGCG 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 126, 270
BssMI GATC 1 cut(s) 75
BssNAI GTATAC 1 cut(s) 285
Bst1107I GTATAC 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 127, 272
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 27, 36
BstF5I GGATG 2 cut(s) 136, 226
BstFNI CGCG 1 cut(s) 292
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 2 cut(s) 166, 294
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 2 cut(s) 105, 233
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 31, 149
BstNI CCWGG 2 cut(s) 127, 272
BstSCI CCNGG 2 cut(s) 125, 270
BstSFI CTRYAG 1 cut(s) 178
BstUI CGCG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 82, 130
BstZ17I GTATAC 1 cut(s) 285
BtsCI GGATG 2 cut(s) 136, 226
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 2 cut(s) 166, 294
Csp6I GTAC 1 cut(s) 61
CviJI RGCY 7 cut(s) 25, 34, 121, 143, 185, 225, 247
CviKI_1 RGCY 7 cut(s) 25, 34, 121, 143, 185, 225, 247
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 2 cut(s) 27, 36
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
Eco88I CYCGRG 2 cut(s) 158, 236
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 125, 270
EcoT38I GRGCYC 1 cut(s) 249
Esp3I CGTCTC 2 cut(s) 105, 233
FaiI YATR 5 cut(s) 44, 80, 99, 267, 285
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FblI GTMKAC 1 cut(s) 284
Fnu4HI GCNGC 2 cut(s) 71, 144
FokI GGATG 2 cut(s) 143, 233
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 71, 144
FspBI CTAG 2 cut(s) 66, 257
GlaI GCGC 2 cut(s) 165, 293
GluI GCNGC 2 cut(s) 71, 144
HaeII RGCGCY 1 cut(s) 167
HhaI GCGC 2 cut(s) 166, 294
Hin6I GCGC 2 cut(s) 164, 292
HinP1I GCGC 2 cut(s) 164, 292
HphI GGTGA 2 cut(s) 148, 253
Hpy166II GTNNAC 2 cut(s) 63, 285
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 236, 238
Hpy8I GTNNAC 2 cut(s) 63, 285
HpyAV CCTTC 2 cut(s) 133, 192
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 149
HpyF3I CTNAG 2 cut(s) 27, 36
HspAI GCGC 2 cut(s) 164, 292
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 6 cut(s) 29, 48, 112, 139, 257, 284
Lsp1109I GCAGC 2 cut(s) 82, 130
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 66, 257
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 298
MnlI CCTC 3 cut(s) 36, 127, 185
MseI TTAA 1 cut(s) 301
MspR9I CCNGG 2 cut(s) 127, 272
MvaI CCWGG 2 cut(s) 127, 272
MvnI CGCG 1 cut(s) 292
MwoI GCNNNNNNNGC 2 cut(s) 31, 149
NdeII GATC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 259
PaeR7I CTCGAG 1 cut(s) 236
PkrI GCNGC 2 cut(s) 72, 145
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 125, 270
PspGI CCWGG 2 cut(s) 125, 270
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 301
SatI GCNGC 2 cut(s) 71, 144
Sau3AI GATC 1 cut(s) 75
ScrFI CCNGG 2 cut(s) 127, 272
SduI GDGCHC 1 cut(s) 249
SetI ASST 7 cut(s) 97, 123, 138, 187, 203, 249, 266
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 236, 278
SmoI CTYRAG 2 cut(s) 236, 278
SpeI ACTAGT 1 cut(s) 256
Sse9I AATT 1 cut(s) 298
SsiI CCGC 2 cut(s) 7, 290
SspMI CTAG 2 cut(s) 66, 257
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 125, 270
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 298
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 70, 143
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 217, 267
TspGWI ACGGA 3 cut(s) 48, 123, 257
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 284
XspI CTAG 2 cut(s) 66, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.