Prupe.1G436800_v2.0.a1

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000732
Physical Location & Seq
Forward (+)
37238881 .. 37239467
587 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G436800.1

Sequence Viewer

Length: 291 bp
ATGGGTTATCACAATAATCTTGATAAGGTCCGTAATAAGAGGGCCAAGTTTCCCTACACAAAGGAGCAGATAAGGAACGTCTTCAAACGTCATGACAAGAATGGAGATGGTCAACTTTCCAAAGATGAGCTGGACGCAGCCTTCAAAGAACTTGGCTCGATATGGCCTCCTGGTAGAGCTTGGTTTGCTCAAAGGTATGCAGATGACGACGGCGATGGCTTCATTTCTATAGACAAGGAGCTCAGCAAGCTCGTCCAGTATGCCCTAGAATTGAAGTATACACTTAAGTAA

Protein Analysis

97

Amino Acids

11.21

Weight (kDa)

9.13

Isoelectric Point (pI)

22.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 278
AflII CTTAAG 1 cut(s) 284
AgsI TTSAA 3 cut(s) 85, 145, 274
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 4 cut(s) 130, 179, 241, 250
AluI AGCT 4 cut(s) 130, 179, 241, 250
Alw21I GWGCWC 1 cut(s) 243
AoxI GGCC 2 cut(s) 42, 164
ApeKI GCWGC 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 28, 42
AvaII GGWCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 101, 209
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 171
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 228
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 138
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 28, 42
BmrFI CCNGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 73
Bpu1102I GCTNAGC 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 256
BseXI GCAGC 1 cut(s) 149
BshFI GGCC 2 cut(s) 44, 166
BsiHKAI GWGCWC 1 cut(s) 243
BsnI GGCC 2 cut(s) 44, 166
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1720I GCTNAGC 1 cut(s) 242
BspANI GGCC 2 cut(s) 44, 166
BspCNI CTCAG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 284
BsrI ACTGG 1 cut(s) 256
BssNAI GTATAC 1 cut(s) 279
Bst1107I GTATAC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 171
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 185, 247
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 279
BsuRI GGCC 2 cut(s) 44, 166
BtgZI GCGATG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 248
CciI TCATGA 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 28, 42
CseI GACGC 1 cut(s) 143
CviAII CATG 1 cut(s) 92
CviJI RGCY 9 cut(s) 44, 130, 140, 156, 166, 179, 219, 241, 250
CviKI_1 RGCY 9 cut(s) 44, 130, 140, 156, 166, 179, 219, 241, 250
DdeI CTNAG 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 1 cut(s) 95
FaiI YATR 6 cut(s) 93, 163, 198, 230, 261, 279
FatI CATG 1 cut(s) 91
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 266
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 2 cut(s) 44, 166
HgaI GACGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 95
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 113, 279
Hpy188III TCNNGA 2 cut(s) 20, 92
Hpy8I GTNNAC 2 cut(s) 113, 279
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 2 cut(s) 78, 88
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 247
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 78, 88
Hsp92II CATG 1 cut(s) 95
LmnI GCTCC 2 cut(s) 64, 238
LpnPI CCDG 4 cut(s) 116, 156, 183, 269
Lsp1109I GCAGC 1 cut(s) 149
MaeI CTAG 1 cut(s) 266
MaeII ACGT 2 cut(s) 78, 88
MboII GAAGA 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 1 cut(s) 269
MnlI CCTC 2 cut(s) 33, 177
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 185, 247
NlaIII CATG 1 cut(s) 95
PagI TCATGA 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 80
PkrI GCNGC 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 2 cut(s) 28, 42
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 28, 42
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 243
SetI ASST 8 cut(s) 30, 81, 91, 132, 181, 197, 243, 252
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 269
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 169
TaiI ACGT 2 cut(s) 81, 91
TaqI TCGA 1 cut(s) 158
TasI AATT 1 cut(s) 269
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 211
TspGWI ACGGA 1 cut(s) 20
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.