Rroxscaffold_7G00190470

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000732
Physical Location & Seq
Reverse (-)
30562908 .. 30563676
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190470.1

Sequence Viewer

Length: 417 bp
ATGCAGGGACCAGCCAGAGCCCTATATATAGATGTTTTGCTCAACCCAGTGATCCATCATATACAGATTCATAGTAGTGCAAGACTAAATTTTCTTGCATATATATATAGGCCACTGAAAGACGGTAAGATGGTGCGTGAGGTCACTGTGGTGTTTAAGGATCTTCCGTACACTGAGCAGCAGATCATAAATATTTTCAAAGGTTTTGACCTGAATGGAGACGGCAAACTGTCCTGGGATGAGTTGAAAGCTGCGTTCGCTAAACTCGGGGCGTTTTTGCCCGACTACAGAGCTTGGCGAGGACGAAGCTGTGCAGATGCCGACAAGGATGGCTTCATCTCTCTCGAGACCGAGCTCAATGATCTTGTCACCTATACCCACAAACTACAGTATAAACCGAATTACCGAAGTAATTAA

Protein Analysis

138

Amino Acids

15.89

Weight (kDa)

8.63

Isoelectric Point (pI)

27.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 62 - 89 6.3e-07 EF hand domain
EF-hand_6 PF13405 62 - 90 7.7e-07 EF-hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 46, 168
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 2 cut(s) 199, 247
AjnI CCWGG 1 cut(s) 233
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 4 cut(s) 251, 293, 309, 355
AluI AGCT 4 cut(s) 251, 293, 309, 355
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 213, 341
AlwI GGATC 2 cut(s) 46, 168
Ama87I CYCGRG 2 cut(s) 266, 344
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 178, 251
ApoI RAATTY 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 361
AvaI CYCGRG 2 cut(s) 266, 344
AvaII GGWCC 1 cut(s) 8
BanII GRGCYC 2 cut(s) 22, 357
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 190, 238
BccI CCATC 3 cut(s) 63, 124, 323
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 213, 341
BfmI CTRYAG 2 cut(s) 286, 386
BisI GCNGC 2 cut(s) 179, 252
BlsI GCNGC 2 cut(s) 180, 253
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 8
BmeT110I CYCGRG 2 cut(s) 266, 344
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 244, 334
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 190, 238
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 2 cut(s) 266, 344
BslFI GGGAC 1 cut(s) 21
BsmAI GTCTC 2 cut(s) 213, 341
BsmBI CGTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 1 cut(s) 112
Bso31I GGTCTC 1 cut(s) 341
BsoBI CYCGRG 2 cut(s) 266, 344
Bsp1286I GDGCHC 2 cut(s) 22, 357
Bsp143I GATC 4 cut(s) 51, 160, 183, 361
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 2 cut(s) 46, 168
BspTNI GGTCTC 1 cut(s) 341
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 4 cut(s) 51, 160, 183, 361
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 4 cut(s) 125, 148, 231, 390
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 244, 334
BstKTI GATC 4 cut(s) 54, 163, 186, 364
BstMAI GTCTC 2 cut(s) 213, 341
BstMBI GATC 4 cut(s) 51, 160, 183, 361
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstSFI CTRYAG 2 cut(s) 286, 386
BstV1I GCAGC 2 cut(s) 190, 238
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 244, 334
BtsIMutI CAGTG 4 cut(s) 54, 113, 144, 171
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 8 cut(s) 14, 20, 112, 251, 293, 309, 333, 355
CviKI_1 RGCY 8 cut(s) 14, 20, 112, 251, 293, 309, 333, 355
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 174
DpnI GATC 4 cut(s) 53, 162, 185, 363
DpnII GATC 4 cut(s) 51, 160, 183, 361
Ecl136II GAGCTC 1 cut(s) 355
Eco24I GRGCYC 2 cut(s) 22, 357
Eco31I GGTCTC 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 355
Eco88I CYCGRG 2 cut(s) 266, 344
EcoICRI GAGCTC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 233
EcoT38I GRGCYC 2 cut(s) 22, 357
Esp3I CGTCTC 1 cut(s) 213
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 179, 252
FokI GGATG 2 cut(s) 251, 341
FriOI GRGCYC 2 cut(s) 22, 357
Fsp4HI GCNGC 2 cut(s) 179, 252
GluI GCNGC 2 cut(s) 179, 252
HaeIII GGCC 1 cut(s) 112
HinfI GANTC 1 cut(s) 67
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 1 cut(s) 171
Hpy188III TCNNGA 2 cut(s) 344, 346
Hpy8I GTNNAC 1 cut(s) 171
HpyCH4III ACNGT 4 cut(s) 125, 148, 231, 390
HpyCH4V TGCA 4 cut(s) 4, 80, 98, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 174
Kzo9I GATC 4 cut(s) 51, 160, 183, 361
LpnPI CCDG 6 cut(s) 24, 28, 60, 220, 224, 247
Lsp1109I GCAGC 2 cut(s) 190, 238
LweI GCATC 1 cut(s) 307
MaeIII GTNAC 2 cut(s) 142, 367
MalI GATC 4 cut(s) 53, 162, 185, 363
MboI GATC 4 cut(s) 51, 160, 183, 361
MboII GAAGA 1 cut(s) 155
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 2 cut(s) 22, 357
MluCI AATT 3 cut(s) 88, 400, 412
MnlI CCTC 2 cut(s) 133, 293
MseI TTAA 2 cut(s) 156, 415
MslI CAYNNNNRTG 2 cut(s) 75, 149
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 4 cut(s) 51, 160, 183, 361
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 2 cut(s) 142, 367
OliI CACNNNNGTG 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 344
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 180, 253
Psp124BI GAGCTC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 2 cut(s) 75, 149
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 156, 415
SatI GCNGC 2 cut(s) 179, 252
Sau3AI GATC 4 cut(s) 51, 160, 183, 361
Sau96I GGNCC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 2 cut(s) 22, 357
SetI ASST 8 cut(s) 144, 205, 213, 253, 295, 311, 357, 374
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 2 cut(s) 286, 386
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 2 cut(s) 75, 149
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 3 cut(s) 88, 400, 412
SspI AATATT 1 cut(s) 193
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 4 cut(s) 125, 148, 231, 390
TaqI TCGA 1 cut(s) 345
TaqII GACCGA 1 cut(s) 365
TasI AATT 3 cut(s) 88, 400, 412
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 2 cut(s) 156, 415
Tru9I TTAA 2 cut(s) 156, 415
TscAI CASTG 4 cut(s) 54, 120, 151, 178
TseFI GTSAC 2 cut(s) 142, 367
TseI GCWGC 2 cut(s) 178, 251
Tsp45I GTSAC 2 cut(s) 142, 367
TspDTI ATGAA 2 cut(s) 59, 325
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 4 cut(s) 54, 120, 151, 178
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 88
XhoI CTCGAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.