Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000732

Physical Location & Seq

Genomic Coordinates Reverse (-)

66061603 .. 66062004

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTTAGGGATGTCGATCTTCCCTTTTCTGAACAAGAAATCGAACGATGTGCTTCTTTTTTTGTACCGGGCATGACCTACTGCCCCGAGCAGAAGGCCATTAAGAAGGTCCCAATTCACTGTATCAGCAAGGAGCAAGTCTGCGATTTTTTCAAAAGATTTGATGGGAACGGTGACGGCAAACTCTGCAAGGAAGAGATCAAGGCAGCCTTTCGGAAACTCGGATCGCGTTGGAGCTCTTACAGAGCCCGGAGAGCATTAGACCATGCAGATTCCAATGGCGATGGCATCATCTCTAATGAGGAGCTCGACGACCTTATCAACTATGCCCTAGATTGTGGTTATAAGCTATTAGCGCCACATATATGTGTGTGTCATAAGCTATTAGCGCCACATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

133

Amino Acids

15.11

Weight (kDa)

6.5

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	49 - 75	3.1e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000732)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica	Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis	pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis	RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata	RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora	Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa	Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha	Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana	Rw0G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AccII	CGCG	1 cut(s)	229
AclWI	GGATC	1 cut(s)	232
AfaI	GTAC	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	4 cut(s)	237, 307, 349, 382
AluI	AGCT	4 cut(s)	237, 307, 349, 382
Alw21I	GWGCWC	2 cut(s)	239, 309
AlwI	GGATC	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	206
AspLEI	GCGC	2 cut(s)	358, 391
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	2 cut(s)	69, 250
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	3 cut(s)	239, 250, 309
Bbv12I	GWGCWC	2 cut(s)	239, 309
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	158, 278
BceAI	ACGGC	1 cut(s)	193
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BcnI	CCSGG	2 cut(s)	69, 250
BfaI	CTAG	1 cut(s)	332
BfoI	RGCGCY	2 cut(s)	359, 392
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	69, 250
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	69, 250
BmsI	GCATC	1 cut(s)	297
BpuMI	CCSGG	2 cut(s)	69, 250
BsaBI	GATNNNNATC	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	15
BseGI	GGATG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	2 cut(s)	239, 309
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	68, 250
BslFI	GGGAC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	3 cut(s)	239, 250, 309
Bsp143I	GATC	3 cut(s)	16, 198, 224
BspANI	GGCC	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	232
BssMI	GATC	3 cut(s)	16, 198, 224
Bst4CI	ACNGT	2 cut(s)	122, 173
Bst6I	CTCTTC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	229
BstH2I	RGCGCY	2 cut(s)	359, 392
BstHHI	GCGC	2 cut(s)	358, 391
BstKTI	GATC	3 cut(s)	19, 201, 227
BstMBI	GATC	3 cut(s)	16, 198, 224
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 254, 355, 388
BstSCI	CCNGG	2 cut(s)	67, 248
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	98
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	118
CfoI	GCGC	2 cut(s)	358, 391
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	2 cut(s)	73, 266
CviJI	RGCY	7 cut(s)	98, 209, 237, 248, 307, 349, 382
CviKI_1	RGCY	7 cut(s)	98, 209, 237, 248, 307, 349, 382
CviQI	GTAC	1 cut(s)	65
DpnI	GATC	3 cut(s)	18, 200, 226
DpnII	GATC	3 cut(s)	16, 198, 224
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	2 cut(s)	237, 307
Eco24I	GRGCYC	3 cut(s)	239, 250, 309
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	2 cut(s)	237, 307
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	2 cut(s)	237, 307
EcoO109I	RGGNCCY	1 cut(s)	109
EcoT38I	GRGCYC	3 cut(s)	239, 250, 309
FaeI	CATG	2 cut(s)	76, 269
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	72, 265
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	3 cut(s)	239, 250, 309
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	2 cut(s)	357, 390
GluI	GCNGC	1 cut(s)	207
HaeII	RGCGCY	2 cut(s)	359, 392
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	68, 250
HhaI	GCGC	2 cut(s)	358, 391
Hin1II	CATG	2 cut(s)	76, 269
Hin6I	GCGC	2 cut(s)	356, 389
HinP1I	GCGC	2 cut(s)	356, 389
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	2 cut(s)	68, 250
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	3 cut(s)	31, 216, 224
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	88, 100
HpyCH4III	ACNGT	2 cut(s)	122, 173
HpyCH4V	TGCA	2 cut(s)	189, 269
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 254, 355, 388
Hsp92II	CATG	2 cut(s)	76, 269
HspAI	GCGC	2 cut(s)	356, 389
Kzo9I	GATC	3 cut(s)	16, 198, 224
LmnI	GCTCC	3 cut(s)	133, 234, 304
LpnPI	CCDG	2 cut(s)	81, 263
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	3 cut(s)	18, 200, 226
MboI	GATC	3 cut(s)	16, 198, 224
MboII	GAAGA	2 cut(s)	11, 206
MhlI	GDGCHC	3 cut(s)	239, 250, 309
MluCI	AATT	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	295
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	2 cut(s)	364, 366
MspI	CCGG	2 cut(s)	68, 250
MspR9I	CCNGG	2 cut(s)	69, 250
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	4 cut(s)	186, 254, 355, 388
NciI	CCSGG	2 cut(s)	69, 250
NdeII	GATC	3 cut(s)	16, 198, 224
NlaIII	CATG	2 cut(s)	76, 269
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	109
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	2 cut(s)	239, 309
Psp5II	RGGWCCY	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	109
PspPPI	RGGWCCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	2 cut(s)	364, 366
SacI	GAGCTC	2 cut(s)	239, 309
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	3 cut(s)	16, 198, 224
Sau96I	GGNCC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	69, 250
SduI	GDGCHC	3 cut(s)	239, 250, 309
SetI	ASST	7 cut(s)	80, 111, 239, 309, 318, 351, 384
SfaNI	GCATC	1 cut(s)	297
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	364, 366
Sse9I	AATT	1 cut(s)	114
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	2 cut(s)	239, 309
StyD4I	CCNGG	2 cut(s)	67, 248
TaaI	ACNGT	2 cut(s)	122, 173
TaqI	TCGA	3 cut(s)	15, 42, 309
TasI	AATT	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	173
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	109
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.