Rh7AG394600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
51697019 .. 51711864
14846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG394600.1

Sequence Viewer

Length: 999 bp
ATGTGGAAGCAGTTAAAACTAAATGGATCCCTGCAGTCAAGGAACAGTGAATTTGTTGATCCTTACTTTCAGGAGGCAAAGAAGTTGAGCAAGCCATATGTTGATCACGTAGCCATTGTTGCAAAACCTCATCTTGAAAAAGTTAAAAGTGGTTTTGAAGATCTATACAAAGCAGATCCTGATGTTTCGTACACTGAGCAGCAGATCATAAATATTTTCAAGAGCTTTGACCTGAACGGAGACGGCAAGCTGTCCTGGGATGAGGTGAAGGCTGCGTTCGCTAAACTCAGGGCGTTTTGTCCTAACTACAGAGCTTGGCAAGGACAAAGGCGTGCCGATGCCGACAAGGATGGCTTCGTCTCTCTTGAGACCGAGCTCGATGAACTTGTCACCTATACCCTAAAACAAGGCTTGTTCACCATCATCATCCTTCCCTCCGAGGCCAAGGGAGAAGGCAAAGGGAACAACTTACACATTGGGTTTTACGCTTTGAGTTGCCCCAAGGTTGAGGACATTGTTGCCGAGGGTTGTGATGCCTCGATCCTGTTAGACGCGACACCATCTGGTGAGCCTATAGAGAAAACATCACCAGCCAATAGTGAAACACAAAGAGGCCTTGATGTTATTGATGAGATCAAGGCCCAGGTAGAGCAGGAGTTCCCCCAAACTGTTTCATGCACTGACATATTAGCATTTGCTGCTCGAGAAGCCGTTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAACCGGTCGCCGTGACAGTAGGACTTCACGTGCTTCTGATGTCAATTTCAACCTCCCTACACCTGTAACACCTCTGAAAGACATTACAGACATGTTCGGCAGGAGAAATCCCACACTAGAAGATATGGTTGTCTCGTCCGGTGCACACTCCATTGGCAAAGCACAATGCACCCAATTGAAGACAAACTATACAAATATAGCAAAGCTCAGCCCCGAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

332

Amino Acids

36.88

Weight (kDa)

5.42

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 69 - 96 2.8e-06 EF hand domain
EF-hand_6 PF13405 69 - 96 8.8e-06 EF-hand domain
peroxidase PF00141 171 - 313 1.2e-40 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 554
AclWI GGATC 5 cut(s) 21, 34, 53, 170, 535
AcsI RAATTY 1 cut(s) 50
AcvI CACGTG 1 cut(s) 776
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 972
AflIII ACRYGT 1 cut(s) 837
AgeI ACCGGT 1 cut(s) 749
AgsI TTSAA 5 cut(s) 137, 158, 220, 796, 925
AjnI CCWGG 3 cut(s) 254, 642, 971
AluBI AGCT 6 cut(s) 225, 250, 314, 376, 952, 996
AluI AGCT 6 cut(s) 225, 250, 314, 376, 952, 996
Alw21I GWGCWC 2 cut(s) 378, 892
Alw26I GTCTC 5 cut(s) 234, 362, 364, 883, 956
Alw44I GTGCAC 1 cut(s) 888
AlwI GGATC 5 cut(s) 21, 34, 53, 170, 535
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 2 cut(s) 702, 959
AoxI GGCC 4 cut(s) 441, 613, 639, 724
ApaLI GTGCAC 1 cut(s) 888
ApeKI GCWGC 3 cut(s) 199, 272, 698
ApoI RAATTY 1 cut(s) 50
AsiGI ACCGGT 1 cut(s) 749
AspS9I GGNCC 2 cut(s) 640, 975
AsuHPI GGTGA 5 cut(s) 277, 382, 409, 578, 579
AvaI CYCGRG 2 cut(s) 702, 959
AvaII GGWCC 1 cut(s) 975
BaeGI GKGCMC 1 cut(s) 892
BamHI GGATCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 378
BbrPI CACGTG 1 cut(s) 776
BbsI GAAGAC 1 cut(s) 932
Bbv12I GWGCWC 2 cut(s) 378, 892
BbvI GCAGC 3 cut(s) 211, 259, 685
BccI CCATC 3 cut(s) 344, 428, 568
BceAI ACGGC 3 cut(s) 259, 695, 741
BciT130I CCWGG 3 cut(s) 256, 644, 973
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 5 cut(s) 234, 362, 364, 883, 956
BfaI CTAG 3 cut(s) 719, 863, 997
BfmI CTRYAG 3 cut(s) 32, 307, 573
BglII AGATCT 1 cut(s) 160
BisI GCNGC 3 cut(s) 200, 273, 699
BlpI GCTNAGC 1 cut(s) 953
BlsI GCNGC 3 cut(s) 201, 274, 700
Bme1390I CCNGG 3 cut(s) 256, 644, 973
Bme18I GGWCC 1 cut(s) 975
BmeT110I CYCGRG 2 cut(s) 702, 959
BmgT120I GGNCC 2 cut(s) 640, 975
BmiI GGNNCC 2 cut(s) 28, 977
BmrFI CCNGG 3 cut(s) 256, 644, 973
BmsI GCATC 2 cut(s) 328, 523
BpiI GAAGAC 1 cut(s) 932
Bpu1102I GCTNAGC 1 cut(s) 953
BpuEI CTTGAG 1 cut(s) 386
BsaAI YACGTR 2 cut(s) 109, 776
BsaI GGTCTC 2 cut(s) 362, 956
BsaJI CCNNGG 7 cut(s) 255, 438, 444, 501, 522, 642, 971
BsaWI WCCGGW 2 cut(s) 749, 884
Bsc4I CCNNNNNNNGG 1 cut(s) 972
Bse118I RCCGGY 2 cut(s) 722, 749
BseBI CCWGG 3 cut(s) 256, 644, 973
BseDI CCNNGG 7 cut(s) 255, 438, 444, 501, 522, 642, 971
BseGI GGATG 3 cut(s) 265, 355, 426
BseLI CCNNNNNNNGG 1 cut(s) 972
BseMII CTCAG 3 cut(s) 186, 301, 967
BseSI GKGCMC 1 cut(s) 892
BseXI GCAGC 3 cut(s) 211, 259, 685
Bsh1236I CGCG 1 cut(s) 554
Bsh1285I CGRYCG 1 cut(s) 754
BshFI GGCC 4 cut(s) 443, 615, 641, 726
BshTI ACCGGT 1 cut(s) 749
BsiEI CGRYCG 1 cut(s) 754
BsiHKAI GWGCWC 2 cut(s) 378, 892
BsiHKCI CYCGRG 2 cut(s) 702, 959
BsiSI CCGG 3 cut(s) 723, 750, 885
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 1 cut(s) 972
BsmAI GTCTC 5 cut(s) 234, 362, 364, 883, 956
BsmBI CGTCTC 2 cut(s) 234, 364
BsmFI GGGAC 1 cut(s) 728
BsnI GGCC 4 cut(s) 443, 615, 641, 726
Bso31I GGTCTC 2 cut(s) 362, 956
BsoBI CYCGRG 2 cut(s) 702, 959
Bsp1286I GDGCHC 2 cut(s) 378, 892
Bsp143I GATC 8 cut(s) 26, 58, 103, 160, 175, 204, 540, 633
Bsp1720I GCTNAGC 1 cut(s) 953
BspANI GGCC 4 cut(s) 443, 615, 641, 726
BspCNI CTCAG 3 cut(s) 187, 300, 966
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 2 cut(s) 28, 977
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 5 cut(s) 21, 34, 53, 170, 535
BspTNI GGTCTC 2 cut(s) 362, 956
BsrFI RCCGGY 2 cut(s) 722, 749
BssAI RCCGGY 2 cut(s) 722, 749
BssECI CCNNGG 7 cut(s) 255, 438, 444, 501, 522, 642, 971
BssMI GATC 8 cut(s) 26, 58, 103, 160, 175, 204, 540, 633
BssT1I CCWWGG 2 cut(s) 444, 501
Bst2UI CCWGG 3 cut(s) 256, 644, 973
Bst4CI ACNGT 3 cut(s) 47, 670, 764
BstAPI GCANNNNNTGC 1 cut(s) 698
BstBAI YACGTR 2 cut(s) 109, 776
BstC8I GCNNGC 4 cut(s) 92, 248, 333, 724
BstDEI CTNAG 3 cut(s) 195, 287, 953
BstF5I GGATG 3 cut(s) 265, 355, 426
BstFNI CGCG 1 cut(s) 554
BstKTI GATC 8 cut(s) 29, 61, 106, 163, 178, 207, 543, 636
BstMAI GTCTC 5 cut(s) 234, 362, 364, 883, 956
BstMBI GATC 8 cut(s) 26, 58, 103, 160, 175, 204, 540, 633
BstMCI CGRYCG 1 cut(s) 754
BstMWI GCNNNNNNNGC 4 cut(s) 119, 278, 698, 707
BstNI CCWGG 3 cut(s) 256, 644, 973
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 3 cut(s) 254, 642, 971
BstSFI CTRYAG 3 cut(s) 32, 307, 573
BstSLI GKGCMC 1 cut(s) 892
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 3 cut(s) 211, 259, 685
BstV2I GAAGAC 1 cut(s) 932
BstX2I RGATCY 3 cut(s) 26, 160, 175
BstYI RGATCY 3 cut(s) 26, 160, 175
BsuRI GGCC 4 cut(s) 443, 615, 641, 726
BtsCI GGATG 3 cut(s) 265, 355, 426
BtsIMutI CAGTG 3 cut(s) 52, 192, 678
Cac8I GCNNGC 4 cut(s) 92, 248, 333, 724
CaiI CAGNNNCTG 1 cut(s) 179
Cfr10I RCCGGY 2 cut(s) 722, 749
Cfr13I GGNCC 2 cut(s) 640, 975
CseI GACGC 1 cut(s) 560
Csp6I GTAC 1 cut(s) 190
CspAI ACCGGT 1 cut(s) 749
CviAII CATG 2 cut(s) 675, 838
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 195, 287, 953
DpnI GATC 8 cut(s) 28, 60, 105, 162, 177, 206, 542, 635
DpnII GATC 8 cut(s) 26, 58, 103, 160, 175, 204, 540, 633
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 2 cut(s) 444, 501
Eco147I AGGCCT 1 cut(s) 615
Eco24I GRGCYC 1 cut(s) 378
Eco31I GGTCTC 2 cut(s) 362, 956
Eco47I GGWCC 1 cut(s) 975
Eco53kI GAGCTC 1 cut(s) 376
Eco72I CACGTG 1 cut(s) 776
Eco88I CYCGRG 2 cut(s) 702, 959
EcoICRI GAGCTC 1 cut(s) 376
EcoRII CCWGG 3 cut(s) 254, 642, 971
EcoT14I CCWWGG 2 cut(s) 444, 501
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 2 cut(s) 444, 501
Esp3I CGTCTC 2 cut(s) 234, 364
FaeI CATG 2 cut(s) 678, 841
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 728
FatI CATG 2 cut(s) 674, 837
FauNDI CATATG 1 cut(s) 97
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 200, 273, 699
FokI GGATG 3 cut(s) 272, 362, 413
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 3 cut(s) 200, 273, 699
FspBI CTAG 3 cut(s) 719, 863, 997
GluI GCNGC 3 cut(s) 200, 273, 699
HaeIII GGCC 4 cut(s) 443, 615, 641, 726
HapII CCGG 3 cut(s) 723, 750, 885
HgaI GACGC 1 cut(s) 560
Hin1II CATG 2 cut(s) 678, 841
HpaII CCGG 3 cut(s) 723, 750, 885
HphI GGTGA 5 cut(s) 277, 382, 409, 578, 579
Hpy166II GTNNAC 4 cut(s) 192, 417, 715, 890
Hpy188I TCNGA 3 cut(s) 439, 784, 822
Hpy188III TCNNGA 6 cut(s) 71, 134, 179, 220, 365, 704
Hpy8I GTNNAC 4 cut(s) 192, 417, 715, 890
HpyAV CCTTC 4 cut(s) 262, 440, 446, 977
HpyCH4III ACNGT 3 cut(s) 47, 670, 764
HpyCH4IV ACGT 2 cut(s) 108, 775
HpyCH4V TGCA 5 cut(s) 34, 122, 678, 890, 915
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 278, 698, 707
HpyF3I CTNAG 3 cut(s) 195, 287, 953
HpySE526I ACGT 2 cut(s) 108, 775
Hsp92II CATG 2 cut(s) 678, 841
KroI GCCGGC 1 cut(s) 722
KroNI GCCGGC 1 cut(s) 724
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 8 cut(s) 26, 58, 103, 160, 175, 204, 540, 633
Lsp1109I GCAGC 3 cut(s) 211, 259, 685
LweI GCATC 2 cut(s) 328, 523
MaeI CTAG 3 cut(s) 719, 863, 997
MaeII ACGT 2 cut(s) 108, 775
MaeIII GTNAC 4 cut(s) 388, 734, 758, 811
MalI GATC 8 cut(s) 28, 60, 105, 162, 177, 206, 542, 635
MboI GATC 8 cut(s) 26, 58, 103, 160, 175, 204, 540, 633
MboII GAAGA 3 cut(s) 170, 878, 937
MfeI CAATTG 1 cut(s) 920
MflI RGATCY 3 cut(s) 26, 160, 175
MhlI GDGCHC 2 cut(s) 378, 892
MluCI AATT 3 cut(s) 50, 790, 920
MroNI GCCGGC 1 cut(s) 722
MseI TTAA 2 cut(s) 14, 144
MspI CCGG 3 cut(s) 723, 750, 885
MspR9I CCNGG 3 cut(s) 256, 644, 973
MunI CAATTG 1 cut(s) 920
MvaI CCWGG 3 cut(s) 256, 644, 973
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 4 cut(s) 119, 278, 698, 707
NaeI GCCGGC 1 cut(s) 724
NdeI CATATG 1 cut(s) 97
NdeII GATC 8 cut(s) 26, 58, 103, 160, 175, 204, 540, 633
NgoMIV GCCGGC 1 cut(s) 722
NlaIII CATG 2 cut(s) 678, 841
NlaIV GGNNCC 2 cut(s) 28, 977
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 3 cut(s) 388, 734, 758
NspI RCATGY 1 cut(s) 841
PaeR7I CTCGAG 1 cut(s) 702
PceI AGGCCT 1 cut(s) 615
PciI ACATGT 1 cut(s) 837
PdiI GCCGGC 1 cut(s) 724
PinAI ACCGGT 1 cut(s) 749
PkrI GCNGC 3 cut(s) 201, 274, 700
PmaCI CACGTG 1 cut(s) 776
PmlI CACGTG 1 cut(s) 776
Ppu21I YACGTR 2 cut(s) 109, 776
PscI ACATGT 1 cut(s) 837
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 3 cut(s) 254, 642, 971
PspCI CACGTG 1 cut(s) 776
PspGI CCWGG 3 cut(s) 254, 642, 971
PspN4I GGNNCC 2 cut(s) 28, 977
PspPI GGNCC 2 cut(s) 640, 975
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 3 cut(s) 26, 160, 175
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 2 cut(s) 14, 144
SatI GCNGC 3 cut(s) 200, 273, 699
Sau3AI GATC 8 cut(s) 26, 58, 103, 160, 175, 204, 540, 633
Sau96I GGNCC 2 cut(s) 640, 975
ScrFI CCNGG 3 cut(s) 256, 644, 973
SduI GDGCHC 2 cut(s) 378, 892
SfaNI GCATC 2 cut(s) 328, 523
SfcI CTRYAG 3 cut(s) 32, 307, 573
Sfr274I CTCGAG 1 cut(s) 702
SinI GGWCC 1 cut(s) 975
SlaI CTCGAG 1 cut(s) 702
SmlI CTYRAG 2 cut(s) 365, 702
SmoI CTYRAG 2 cut(s) 365, 702
Sse9I AATT 3 cut(s) 50, 790, 920
SseBI AGGCCT 1 cut(s) 615
SspI AATATT 1 cut(s) 214
SspMI CTAG 3 cut(s) 719, 863, 997
SstI GAGCTC 1 cut(s) 378
StuI AGGCCT 1 cut(s) 615
StyD4I CCNGG 3 cut(s) 254, 642, 971
StyI CCWWGG 2 cut(s) 444, 501
TaaI ACNGT 3 cut(s) 47, 670, 764
TaiI ACGT 2 cut(s) 111, 778
TaqI TCGA 3 cut(s) 378, 539, 703
TaqII GACCGA 1 cut(s) 386
TasI AATT 3 cut(s) 50, 790, 920
Tru1I TTAA 2 cut(s) 14, 144
Tru9I TTAA 2 cut(s) 14, 144
TscAI CASTG 3 cut(s) 52, 199, 685
TseFI GTSAC 3 cut(s) 388, 734, 758
TseI GCWGC 3 cut(s) 199, 272, 698
Tsp45I GTSAC 3 cut(s) 388, 734, 758
TspDTI ATGAA 2 cut(s) 396, 663
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 3 cut(s) 52, 199, 685
VneI GTGCAC 1 cut(s) 888
VpaK11BI GGWCC 1 cut(s) 975
XapI RAATTY 1 cut(s) 50
XceI RCATGY 1 cut(s) 841
XhoI CTCGAG 1 cut(s) 702
XspI CTAG 3 cut(s) 719, 863, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.