Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000732

Physical Location & Seq

Genomic Coordinates Reverse (-)

68664875 .. 68665225

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG480900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTTAGGGTTGTCCATCTTCCACCTTCTAAACAAGAACTAGAAAGTTCTGCTTCTTGTTTTGCAGCGGGCATGACCTACTGGCCTGAGCAGACGGCCATTAAGAAGGTCCCAATTCACTGGAGCAAGGAGCAAGTCCGCGATCTTTTCAAAAGCTTTGATAGGAACGGTGACGGAAAACTCTCCAAGGAAGAGCTCAAGGCAGCATTTCGGAAACTCGGATCGCGTTGGAGCTCTTACAGAGCTAGGAGAGCATTACGCCATGCAGATTCCAATGGCGACAGCATCATCTCTAATGAGGAGCTCGACGATCTTATAAACTATGCCCTAAAATGTGGTTATAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

116

Amino Acids

13.27

Weight (kDa)

9.33

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	36 - 71	1.5e-06	EF-hand domain pair
EF-hand_7	PF13499	44 - 73	7.3e-07	EF-hand domain pair
EF-hand_6	PF13405	46 - 74	2.5e-09	EF-hand domain
EF-hand_1	PF00036	46 - 73	3.1e-08	EF hand domain
EF-hand_5	PF13202	47 - 68	2.9e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000732)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica	Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis	pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis	RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata	RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora	Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa	Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha	Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana	Rw0G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	317, 342
AccII	CGCG	2 cut(s)	141, 226
AciI	CCGC	2 cut(s)	68, 139
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	6 cut(s)	156, 196, 234, 245, 304, 346
AluI	AGCT	6 cut(s)	156, 196, 234, 245, 304, 346
Alw21I	GWGCWC	3 cut(s)	198, 236, 306
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	2 cut(s)	83, 96
ApeKI	GCWGC	2 cut(s)	65, 203
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	3 cut(s)	198, 236, 306
Bbv12I	GWGCWC	3 cut(s)	198, 236, 306
BbvI	GCAGC	2 cut(s)	77, 215
BccI	CCATC	1 cut(s)	24
BceAI	ACGGC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	41, 246
BisI	GCNGC	2 cut(s)	66, 204
BlsI	GCNGC	2 cut(s)	67, 205
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	186
Bse1I	ACTGG	2 cut(s)	86, 125
BseDI	CCNNGG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	86, 125
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	77, 215
Bsh1236I	CGCG	2 cut(s)	141, 226
BshFI	GGCC	2 cut(s)	85, 98
BsiHKAI	GWGCWC	3 cut(s)	198, 236, 306
BslFI	GGGAC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	85, 98
Bsp1286I	GDGCHC	3 cut(s)	198, 236, 306
Bsp143I	GATC	3 cut(s)	142, 221, 310
BspACI	CCGC	2 cut(s)	68, 139
BspANI	GGCC	2 cut(s)	85, 98
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	2 cut(s)	141, 226
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	86, 125
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	142, 221, 310
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	87
BstFNI	CGCG	2 cut(s)	141, 226
BstKTI	GATC	3 cut(s)	145, 224, 313
BstMBI	GATC	3 cut(s)	142, 221, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstUI	CGCG	2 cut(s)	141, 226
BstV1I	GCAGC	2 cut(s)	77, 215
BstXI	CCANNNNNNTGG	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	85, 98
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	109
CviAII	CATG	2 cut(s)	73, 263
CviJI	RGCY	8 cut(s)	85, 98, 156, 196, 234, 245, 304, 346
CviKI_1	RGCY	8 cut(s)	85, 98, 156, 196, 234, 245, 304, 346
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	3 cut(s)	144, 223, 312
DpnII	GATC	3 cut(s)	142, 221, 310
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Ecl136II	GAGCTC	3 cut(s)	196, 234, 304
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	3 cut(s)	198, 236, 306
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	3 cut(s)	196, 234, 304
EcoICRI	GAGCTC	3 cut(s)	196, 234, 304
EcoO109I	RGGNCCY	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	3 cut(s)	198, 236, 306
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	76, 266
FaiI	YATR	6 cut(s)	74, 264, 317, 324, 342, 349
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	72, 262
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	66, 204
FriOI	GRGCYC	3 cut(s)	198, 236, 306
Fsp4HI	GCNGC	2 cut(s)	66, 204
FspBI	CTAG	2 cut(s)	41, 246
GluI	GCNGC	2 cut(s)	66, 204
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	85, 98
Hin1II	CATG	2 cut(s)	76, 266
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	213, 221
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	36, 100
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	65, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	76, 266
Kzo9I	GATC	3 cut(s)	142, 221, 310
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	4 cut(s)	123, 130, 231, 301
LpnPI	CCDG	3 cut(s)	67, 99, 106
Lsp1109I	GCAGC	2 cut(s)	77, 215
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	2 cut(s)	41, 246
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	3 cut(s)	144, 223, 312
MboI	GATC	3 cut(s)	142, 221, 310
MboII	GAAGA	2 cut(s)	11, 203
MhlI	GDGCHC	3 cut(s)	198, 236, 306
MluCI	AATT	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	1 cut(s)	292
MseI	TTAA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	68
MvnI	CGCG	2 cut(s)	141, 226
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	3 cut(s)	142, 221, 310
NlaIII	CATG	2 cut(s)	76, 266
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	67, 205
PpuMI	RGGWCCY	1 cut(s)	109
PsiI	TTATAA	2 cut(s)	317, 342
Psp124BI	GAGCTC	3 cut(s)	198, 236, 306
Psp5II	RGGWCCY	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	109
PspPPI	RGGWCCY	1 cut(s)	109
SacI	GAGCTC	3 cut(s)	198, 236, 306
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	66, 204
Sau3AI	GATC	3 cut(s)	142, 221, 310
Sau96I	GGNCC	1 cut(s)	109
SduI	GDGCHC	3 cut(s)	198, 236, 306
SetI	ASST	9 cut(s)	28, 80, 111, 158, 198, 236, 247, 306, 348
SfaNI	GCATC	1 cut(s)	294
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	2 cut(s)	68, 139
SspMI	CTAG	2 cut(s)	41, 246
SstI	GAGCTC	3 cut(s)	198, 236, 306
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	65, 203
Tsp45I	GTSAC	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	109
XspI	CTAG	2 cut(s)	41, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.