Rmu_sc0003252.1_g000012

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003252.1
OG0000732
Physical Location & Seq
Reverse (-)
39415 .. 39744
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003252.1_g000012.1.cds

Sequence Viewer

Length: 330 bp
atgacctactgccccgagcagaaggccattaagaaggtcccaattcactgtatcagcaagaagcaagtctgcgattttttcaaaagatttgataggaacggtgacggcaaactctgcaaggaagagatcaaggcagcctttcggaaactcggatcgcgttggagctcttacagagcctggagagcattagactatgcagattccaatggcgatggcatcatctctaatgaggagctcgacgaccttatcaactatgccctagattgtggttataagctattagcgccacatatatgtgtgtgtcataagctattagcgccacatatatag

Protein Analysis

109

Amino Acids

12.51

Weight (kDa)

8.68

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccII CGCG 1 cut(s) 157
AclWI GGATC 1 cut(s) 160
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 4 cut(s) 165, 235, 277, 310
AluI AGCT 4 cut(s) 165, 235, 277, 310
Alw21I GWGCWC 2 cut(s) 167, 237
AlwI GGATC 1 cut(s) 160
AlwNI CAGNNNCTG 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 134
AspLEI GCGC 2 cut(s) 286, 319
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 37
BanII GRGCYC 2 cut(s) 167, 237
Bbv12I GWGCWC 2 cut(s) 167, 237
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 178
BfaI CTAG 1 cut(s) 260
BfoI RGCGCY 2 cut(s) 287, 320
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 167, 237
BsiHKCI CYCGRG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 167, 237
Bsp143I GATC 2 cut(s) 126, 152
BspANI GGCC 1 cut(s) 26
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 160
BssMI GATC 2 cut(s) 126, 152
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 50, 101
Bst6I CTCTTC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 114
BstFNI CGCG 1 cut(s) 157
BstH2I RGCGCY 2 cut(s) 287, 320
BstHHI GCGC 2 cut(s) 286, 319
BstKTI GATC 2 cut(s) 129, 155
BstMBI GATC 2 cut(s) 126, 152
BstMWI GCNNNNNNNGC 4 cut(s) 114, 182, 283, 316
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 176
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 26
BtgZI GCGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 177
CfoI GCGC 2 cut(s) 286, 319
Cfr13I GGNCC 1 cut(s) 37
CviJI RGCY 7 cut(s) 26, 137, 165, 176, 235, 277, 310
CviKI_1 RGCY 7 cut(s) 26, 137, 165, 176, 235, 277, 310
DpnI GATC 2 cut(s) 128, 154
DpnII GATC 2 cut(s) 126, 152
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 2 cut(s) 165, 235
Eco24I GRGCYC 2 cut(s) 167, 237
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 2 cut(s) 165, 235
Eco88I CYCGRG 1 cut(s) 14
EcoICRI GAGCTC 2 cut(s) 165, 235
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 176
EcoT38I GRGCYC 2 cut(s) 167, 237
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 23
Fnu4HI GCNGC 1 cut(s) 135
FriOI GRGCYC 2 cut(s) 167, 237
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 260
GlaI GCGC 2 cut(s) 285, 318
GluI GCNGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 199
HaeII RGCGCY 2 cut(s) 287, 320
HaeIII GGCC 1 cut(s) 26
HhaI GCGC 2 cut(s) 286, 319
Hin6I GCGC 2 cut(s) 284, 317
HinP1I GCGC 2 cut(s) 284, 317
HinfI GANTC 1 cut(s) 200
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 144, 152
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 16, 28
HpyCH4III ACNGT 2 cut(s) 50, 101
HpyCH4V TGCA 2 cut(s) 117, 197
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 182, 283, 316
HspAI GCGC 2 cut(s) 284, 317
Kzo9I GATC 2 cut(s) 126, 152
LmnI GCTCC 2 cut(s) 162, 232
LpnPI CCDG 2 cut(s) 163, 190
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 128, 154
MboI GATC 2 cut(s) 126, 152
MboII GAAGA 1 cut(s) 134
MhlI GDGCHC 2 cut(s) 167, 237
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 1 cut(s) 223
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 2 cut(s) 292, 294
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 4 cut(s) 114, 182, 283, 316
NdeII GATC 2 cut(s) 126, 152
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 37
PsiI TTATAA 1 cut(s) 273
Psp124BI GAGCTC 2 cut(s) 167, 237
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 37
PspPPI RGGWCCY 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 177
RseI CAYNNNNRTG 2 cut(s) 292, 294
SacI GAGCTC 2 cut(s) 167, 237
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 126, 152
Sau96I GGNCC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 2 cut(s) 167, 237
SetI ASST 7 cut(s) 8, 39, 167, 237, 246, 279, 312
SfaNI GCATC 1 cut(s) 225
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 292, 294
Sse9I AATT 1 cut(s) 42
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 2 cut(s) 167, 237
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 50, 101
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 42
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 101
TspRI CASTG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 37
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.