RLG00000001641

calcium ion binding

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
18652423 .. 18656596
4174 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001641

Sequence Viewer

Length: 720 bp
ATGCCTCGGCAAAGAGTAGGTTTGATAAGTGGAAATGGTGATGAGTATAAAGGTCCTGATGTTTCGTACACTGAGCAGCAGATCATAAATATTTTCAAGAGCTTTGACCTGAACGGAGACGGCAAGCTGTCCTGGGATGAGGTGAAGGCTGCGTTCGCTAAACTCGGGGCATTTTTTCCCAACTACAGAGCTTGGCAAGGACAAAGGCGTGCTGATGCCGACAAGGATGGCTTCGTCTCTCTTGAGACCGAGCTCGATGAACTTGTCACCTATACCCTAAAACAAGGGTCAGAGTTTGCAAGAGGAATACCACCATTTTGGAGGAAGACAAAGTCAAGCATATTTGATGCTGTTAAGACAGCTGATCTGAGGTTCCCATCTGATCCCTGGGATGACATCATTGAATTAGCTAATGATTTGATTCGAGGAATGCTCTGTAAAGATCCTTCTAAAAGGCTCACCGCTCACCAAGTTTTAGAGATGGGTGGTCGTCTAATTGCCGCAACTATCCTCACCTTCACCTTGTTCACCATCATCAATCTTCCCTCTAAGGCCAAGGGAGAAGGCAAAGGGAACGGCTTACATGTTGGGTTTTACGCTTCGAGTTGCCCCAAGGTTGAGGACATTGTTGCTGAGGTTGTGGCCCGTGTGCATGAGCGAGATCCAAGCTCCCTCCTGCCCTCCTCCGCCTCTTTTTCCATGACTGTTTTGTCAAGGTAA

Protein Analysis

240

Amino Acids

26.48

Weight (kDa)

6.33

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 28 - 55 1.8e-06 EF hand domain
EF-hand_6 PF13405 28 - 56 1.6e-06 EF-hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 709
AccBSI CCGCTC 1 cut(s) 464
AciI CCGC 3 cut(s) 462, 501, 687
AclWI GGATC 3 cut(s) 377, 437, 656
AfaI GTAC 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 2 cut(s) 97, 404
AjnI CCWGG 2 cut(s) 131, 386
AluBI AGCT 7 cut(s) 102, 127, 191, 253, 362, 410, 669
AluI AGCT 7 cut(s) 102, 127, 191, 253, 362, 410, 669
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 3 cut(s) 111, 239, 241
AlwI GGATC 3 cut(s) 377, 437, 656
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 552, 642
ApeKI GCWGC 2 cut(s) 76, 149
AspS9I GGNCC 2 cut(s) 53, 643
AsuHPI GGTGA 8 cut(s) 50, 154, 259, 451, 458, 505, 511, 520
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 430, 462
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 633
BbvI GCAGC 2 cut(s) 88, 136
BccI CCATC 4 cut(s) 221, 385, 475, 539
BceAI ACGGC 2 cut(s) 136, 592
BciT130I CCWGG 2 cut(s) 133, 388
BcoDI GTCTC 3 cut(s) 111, 239, 241
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 3 cut(s) 77, 150, 501
BlsI GCNGC 3 cut(s) 78, 151, 502
Bme1390I CCNGG 2 cut(s) 133, 388
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 53, 643
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 2 cut(s) 133, 388
BmsI GCATC 2 cut(s) 205, 337
BpiI GAAGAC 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 417, 449
Bpu10I CCTNAGC 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 6 cut(s) 5, 132, 386, 387, 555, 612
BseBI CCWGG 2 cut(s) 133, 388
BseDI CCNNGG 6 cut(s) 5, 132, 386, 387, 555, 612
BseGI GGATG 3 cut(s) 142, 232, 397
BseMII CTCAG 3 cut(s) 63, 359, 624
BseRI GAGGAG 1 cut(s) 673
BseXI GCAGC 2 cut(s) 88, 136
BshFI GGCC 2 cut(s) 554, 644
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 164
BsmAI GTCTC 3 cut(s) 111, 239, 241
BsmBI CGTCTC 2 cut(s) 111, 241
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 2 cut(s) 554, 644
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 5 cut(s) 81, 364, 382, 442, 661
BspACI CCGC 3 cut(s) 462, 501, 687
BspANI GGCC 2 cut(s) 554, 644
BspCNI CTCAG 3 cut(s) 64, 360, 625
BspLI GGNNCC 1 cut(s) 374
BspPI GGATC 3 cut(s) 377, 437, 656
BspTNI GGTCTC 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 464
BssECI CCNNGG 6 cut(s) 5, 132, 386, 387, 555, 612
BssMI GATC 5 cut(s) 81, 364, 382, 442, 661
BssT1I CCWWGG 2 cut(s) 555, 612
Bst2UI CCWGG 2 cut(s) 133, 388
Bst4CI ACNGT 1 cut(s) 706
BstC8I GCNNGC 2 cut(s) 125, 210
BstDEI CTNAG 4 cut(s) 72, 368, 549, 633
BstF5I GGATG 3 cut(s) 142, 232, 397
BstKTI GATC 5 cut(s) 84, 367, 385, 445, 664
BstMAI GTCTC 3 cut(s) 111, 239, 241
BstMBI GATC 5 cut(s) 81, 364, 382, 442, 661
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 133, 388
BstNSI RCATGY 1 cut(s) 587
BstSCI CCNGG 2 cut(s) 131, 386
BstSFI CTRYAG 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 88, 136
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 2 cut(s) 442, 661
BstXI CCANNNNNNTGG 1 cut(s) 318
BstYI RGATCY 2 cut(s) 442, 661
BsuRI GGCC 2 cut(s) 554, 644
BtsCI GGATG 3 cut(s) 142, 232, 397
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 125, 210
Cfr13I GGNCC 2 cut(s) 53, 643
Csp6I GTAC 1 cut(s) 67
CviAII CATG 3 cut(s) 584, 653, 700
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 4 cut(s) 72, 368, 549, 633
DpnI GATC 5 cut(s) 83, 366, 384, 444, 663
DpnII GATC 5 cut(s) 81, 364, 382, 442, 661
DrdI GACNNNNNNGTC 1 cut(s) 709
DseDI GACNNNNNNGTC 1 cut(s) 709
EciI GGCGGA 1 cut(s) 676
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 555, 612
Eco24I GRGCYC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 131, 386
EcoT14I CCWWGG 2 cut(s) 555, 612
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 2 cut(s) 555, 612
Esp3I CGTCTC 2 cut(s) 111, 241
FaeI CATG 3 cut(s) 587, 656, 703
FaiI YATR 7 cut(s) 48, 86, 273, 341, 585, 654, 701
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 3 cut(s) 583, 652, 699
Fnu4HI GCNGC 3 cut(s) 77, 150, 501
FokI GGATG 3 cut(s) 149, 239, 404
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 3 cut(s) 77, 150, 501
GluI GCNGC 3 cut(s) 77, 150, 501
HaeIII GGCC 2 cut(s) 554, 644
Hin1II CATG 3 cut(s) 587, 656, 703
HinfI GANTC 1 cut(s) 421
HphI GGTGA 8 cut(s) 50, 154, 259, 451, 458, 505, 511, 520
Hpy166II GTNNAC 2 cut(s) 69, 528
Hpy188I TCNGA 3 cut(s) 292, 369, 382
Hpy188III TCNNGA 3 cut(s) 56, 97, 242
Hpy8I GTNNAC 2 cut(s) 69, 528
HpyAV CCTTC 4 cut(s) 139, 456, 526, 557
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4V TGCA 2 cut(s) 299, 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 4 cut(s) 72, 368, 549, 633
Hsp92II CATG 3 cut(s) 587, 656, 703
Kzo9I GATC 5 cut(s) 81, 364, 382, 442, 661
LmnI GCTCC 1 cut(s) 674
LpnPI CCDG 7 cut(s) 69, 118, 122, 145, 373, 400, 689
Lsp1109I GCAGC 2 cut(s) 88, 136
LweI GCATC 2 cut(s) 205, 337
MaeIII GTNAC 1 cut(s) 265
MalI GATC 5 cut(s) 83, 366, 384, 444, 663
MbiI CCGCTC 1 cut(s) 464
MboI GATC 5 cut(s) 81, 364, 382, 442, 661
MboII GAAGA 2 cut(s) 337, 533
MflI RGATCY 2 cut(s) 442, 661
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 404, 495
MseI TTAA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 133, 388
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 2 cut(s) 133, 388
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 5 cut(s) 81, 364, 382, 442, 661
NlaIII CATG 3 cut(s) 587, 656, 703
NlaIV GGNNCC 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 587
PasI CCCWGGG 1 cut(s) 387
PciI ACATGT 1 cut(s) 583
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 421
PflFI GACNNNGTC 1 cut(s) 331
PkrI GCNGC 3 cut(s) 78, 151, 502
PpuMI RGGWCCY 1 cut(s) 53
PscI ACATGT 1 cut(s) 583
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 131, 386
PspGI CCWGG 2 cut(s) 131, 386
PspN4I GGNNCC 1 cut(s) 374
PspPI GGNCC 2 cut(s) 53, 643
PspPPI RGGWCCY 1 cut(s) 53
PsuI RGATCY 2 cut(s) 442, 661
PsyI GACNNNGTC 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 3 cut(s) 77, 150, 501
Sau3AI GATC 5 cut(s) 81, 364, 382, 442, 661
Sau96I GGNCC 2 cut(s) 53, 643
ScrFI CCNGG 2 cut(s) 133, 388
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 2 cut(s) 205, 337
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 2 cut(s) 404, 495
SsiI CCGC 3 cut(s) 462, 501, 687
SspI AATATT 1 cut(s) 91
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 131, 386
StyI CCWWGG 2 cut(s) 555, 612
TaaI ACNGT 1 cut(s) 706
TaqI TCGA 3 cut(s) 255, 424, 602
TaqII GACCGA 1 cut(s) 263
TasI AATT 2 cut(s) 404, 495
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 76, 149
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 53
XceI RCATGY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.