Rmu_sc0000031.1_g000046

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000031.1
OG0000732
Physical Location & Seq
Reverse (-)
211848 .. 213481
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000031.1_g000046.1.cds

Sequence Viewer

Length: 708 bp
atggtgtgctgctgtgggtatgtaggtggcgttgtagctgggttggacggtgccaactgggtcgggtgccccatgttgaatcaatttggatttgttcgagtggagactctgttcgcgaggcagatgaaatgggtggttggcagattttggtgcgaatttggtggaggtggtcaactgcaaatggggtatggtttgccaacgtggttcagaattggcgacgcattaacagatcgcggagctgcatatcatggcttggttgactggtggaatttctcctcctctaggctagaaatttataggtccttaattttaacttttgagaaatgtcgccaagagcacccacaatatctacacttgtttgagcataatgctttgggaattgccaacgttatcaactcccatagcctaggccgcaggggtaaagcgggcatgacctactcgcctgagcagacggccattaagaaggtcccaattcactggagcaaggagcaagtccacgatgttttcaaaagctttgataggaacggtgaaggaaaactctccaaggaagagctcaaggcagcatttcggaaactcggatcgcgttggagctcttacagagccaggagagcattacgccatgcagattccaatggcgacagcatcatctccaatgaggagctcgacgatcttataaactatgccctaaaatgtggttataagctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.65

Weight (kDa)

9.06

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 674, 699
AccB1I GGYRCC 2 cut(s) 50, 66
AccII CGCG 3 cut(s) 116, 234, 583
AciI CCGC 3 cut(s) 234, 412, 425
AclI AACGTT 1 cut(s) 387
AclWI GGATC 1 cut(s) 586
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 3 cut(s) 155, 268, 291
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 2 cut(s) 79, 508
AjnI CCWGG 1 cut(s) 602
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 7 cut(s) 38, 239, 513, 553, 591, 661, 703
AluI AGCT 7 cut(s) 38, 239, 513, 553, 591, 661, 703
Alw21I GWGCWC 4 cut(s) 339, 555, 593, 663
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 586
AoxI GGCC 2 cut(s) 409, 453
ApeKI GCWGC 3 cut(s) 9, 239, 560
ApoI RAATTY 3 cut(s) 155, 268, 291
AspA2I CCTAGG 1 cut(s) 406
AspS9I GGNCC 2 cut(s) 300, 466
AsuHPI GGTGA 1 cut(s) 539
AvaII GGWCC 2 cut(s) 300, 466
AvrII CCTAGG 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 71
BanI GGYRCC 2 cut(s) 50, 66
BanII GRGCYC 3 cut(s) 555, 593, 663
Bbv12I GWGCWC 4 cut(s) 339, 555, 593, 663
BbvI GCAGC 2 cut(s) 226, 572
BceAI ACGGC 1 cut(s) 468
BciT130I CCWGG 1 cut(s) 604
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 3 cut(s) 282, 287, 407
BisI GCNGC 4 cut(s) 10, 240, 412, 561
BlnI CCTAGG 1 cut(s) 406
BlsI GCNGC 4 cut(s) 11, 241, 413, 562
Bme1390I CCNGG 1 cut(s) 604
Bme18I GGWCC 2 cut(s) 300, 466
BmgT120I GGNCC 2 cut(s) 300, 466
BmiI GGNNCC 3 cut(s) 52, 68, 468
BmrFI CCNGG 1 cut(s) 604
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 651
BmuI ACTGGG 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 499
Bpu10I CCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 406, 543
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 3 cut(s) 62, 266, 482
BseBI CCWGG 1 cut(s) 604
BseDI CCNNGG 2 cut(s) 406, 543
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 3 cut(s) 62, 266, 482
BseRI GAGGAG 3 cut(s) 265, 268, 671
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 2 cut(s) 226, 572
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 3 cut(s) 116, 234, 583
BshFI GGCC 2 cut(s) 411, 455
BshNI GGYRCC 2 cut(s) 50, 66
BsiHKAI GWGCWC 4 cut(s) 339, 555, 593, 663
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 2 cut(s) 411, 455
Bsp1286I GDGCHC 5 cut(s) 71, 339, 555, 593, 663
Bsp143I GATC 3 cut(s) 229, 578, 667
Bsp68I TCGCGA 1 cut(s) 116
BspACI CCGC 3 cut(s) 234, 412, 425
BspANI GGCC 2 cut(s) 411, 455
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 3 cut(s) 116, 234, 583
BspLI GGNNCC 3 cut(s) 52, 68, 468
BspPI GGATC 1 cut(s) 586
BspQI GCTCTTC 1 cut(s) 543
BspT107I GGYRCC 2 cut(s) 50, 66
BsrI ACTGG 3 cut(s) 62, 266, 482
BssECI CCNNGG 2 cut(s) 406, 543
BssMI GATC 3 cut(s) 229, 578, 667
BssT1I CCWWGG 2 cut(s) 406, 543
Bst2UI CCWGG 1 cut(s) 604
Bst4CI ACNGT 2 cut(s) 50, 527
Bst6I CTCTTC 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 1 cut(s) 444
BstENI CCTNNNNNAGG 1 cut(s) 280
BstFNI CGCG 3 cut(s) 116, 234, 583
BstKTI GATC 3 cut(s) 232, 581, 670
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 3 cut(s) 229, 578, 667
BstMWI GCNNNNNNNGC 2 cut(s) 411, 608
BstNI CCWGG 1 cut(s) 604
BstSCI CCNGG 1 cut(s) 602
BstSLI GKGCMC 1 cut(s) 71
BstUI CGCG 3 cut(s) 116, 234, 583
BstV1I GCAGC 2 cut(s) 226, 572
BstXI CCANNNNNNTGG 1 cut(s) 477
BsuRI GGCC 2 cut(s) 411, 455
BtsIMutI CAGTG 1 cut(s) 475
BtuMI TCGCGA 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 427
Cfr13I GGNCC 2 cut(s) 300, 466
CseI GACGC 1 cut(s) 227
CviAII CATG 4 cut(s) 73, 248, 430, 620
DdeI CTNAG 1 cut(s) 444
DpnI GATC 3 cut(s) 231, 580, 669
DpnII GATC 3 cut(s) 229, 578, 667
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Ecl136II GAGCTC 3 cut(s) 553, 591, 661
Eco130I CCWWGG 2 cut(s) 406, 543
Eco24I GRGCYC 3 cut(s) 555, 593, 663
Eco47I GGWCC 2 cut(s) 300, 466
Eco53kI GAGCTC 3 cut(s) 553, 591, 661
EcoICRI GAGCTC 3 cut(s) 553, 591, 661
EcoNI CCTNNNNNAGG 1 cut(s) 280
EcoO109I RGGNCCY 2 cut(s) 300, 466
EcoRII CCWGG 1 cut(s) 602
EcoT14I CCWWGG 2 cut(s) 406, 543
EcoT38I GRGCYC 3 cut(s) 555, 593, 663
ErhI CCWWGG 2 cut(s) 406, 543
FaeI CATG 4 cut(s) 76, 251, 433, 623
FaqI GGGAC 1 cut(s) 452
FatI CATG 4 cut(s) 72, 247, 429, 619
FauI CCCGC 1 cut(s) 418
Fnu4HI GCNGC 4 cut(s) 10, 240, 412, 561
FriOI GRGCYC 3 cut(s) 555, 593, 663
Fsp4HI GCNGC 4 cut(s) 10, 240, 412, 561
FspBI CTAG 3 cut(s) 282, 287, 407
GluI GCNGC 4 cut(s) 10, 240, 412, 561
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 499
HaeIII GGCC 2 cut(s) 411, 455
HgaI GACGC 1 cut(s) 227
Hin1II CATG 4 cut(s) 76, 251, 433, 623
HincII GTYRAC 2 cut(s) 173, 259
HindII GTYRAC 2 cut(s) 173, 259
HindIII AAGCTT 1 cut(s) 511
HinfI GANTC 3 cut(s) 79, 106, 626
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 3 cut(s) 173, 259, 496
Hpy188I TCNGA 3 cut(s) 209, 570, 578
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 3 cut(s) 173, 259, 496
Hpy99I CGWCG 2 cut(s) 221, 668
HpyAV CCTTC 2 cut(s) 457, 524
HpyCH4III ACNGT 2 cut(s) 50, 527
HpyCH4IV ACGT 2 cut(s) 200, 387
HpyCH4V TGCA 3 cut(s) 178, 242, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 608
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 2 cut(s) 200, 387
Hsp92II CATG 4 cut(s) 76, 251, 433, 623
Kzo9I GATC 3 cut(s) 229, 578, 667
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 5 cut(s) 236, 480, 487, 588, 658
LpnPI CCDG 8 cut(s) 24, 43, 247, 400, 456, 463, 589, 616
Lsp1109I GCAGC 2 cut(s) 226, 572
LweI GCATC 1 cut(s) 651
MaeI CTAG 3 cut(s) 282, 287, 407
MaeII ACGT 2 cut(s) 200, 387
MalI GATC 3 cut(s) 231, 580, 669
MboI GATC 3 cut(s) 229, 578, 667
MboII GAAGA 1 cut(s) 560
MhlI GDGCHC 5 cut(s) 71, 339, 555, 593, 663
MluCI AATT 8 cut(s) 83, 155, 210, 268, 291, 306, 378, 471
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 24, 566
MnlI CCTC 5 cut(s) 111, 158, 286, 289, 649
MseI TTAA 4 cut(s) 224, 305, 311, 459
MspR9I CCNGG 1 cut(s) 604
MvaI CCWGG 1 cut(s) 604
MvnI CGCG 3 cut(s) 116, 234, 583
MwoI GCNNNNNNNGC 2 cut(s) 411, 608
NdeII GATC 3 cut(s) 229, 578, 667
NlaIII CATG 4 cut(s) 76, 251, 433, 623
NlaIV GGNNCC 3 cut(s) 52, 68, 468
NruI TCGCGA 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 543
PfeI GAWTC 2 cut(s) 79, 626
PkrI GCNGC 4 cut(s) 11, 241, 413, 562
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PpuMI RGGWCCY 2 cut(s) 300, 466
PsiI TTATAA 2 cut(s) 674, 699
Psp124BI GAGCTC 3 cut(s) 555, 593, 663
Psp1406I AACGTT 1 cut(s) 387
Psp5II RGGWCCY 2 cut(s) 300, 466
Psp6I CCWGG 1 cut(s) 602
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 602
PspN4I GGNNCC 3 cut(s) 52, 68, 468
PspPI GGNCC 2 cut(s) 300, 466
PspPPI RGGWCCY 2 cut(s) 300, 466
RruI TCGCGA 1 cut(s) 116
SacI GAGCTC 3 cut(s) 555, 593, 663
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 4 cut(s) 224, 305, 311, 459
SatI GCNGC 4 cut(s) 10, 240, 412, 561
Sau3AI GATC 3 cut(s) 229, 578, 667
Sau96I GGNCC 2 cut(s) 300, 466
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 604
SduI GDGCHC 5 cut(s) 71, 339, 555, 593, 663
SfaNI GCATC 1 cut(s) 651
SinI GGWCC 2 cut(s) 300, 466
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 8 cut(s) 83, 155, 210, 268, 291, 306, 378, 471
SsiI CCGC 3 cut(s) 234, 412, 425
SspMI CTAG 3 cut(s) 282, 287, 407
SstI GAGCTC 3 cut(s) 555, 593, 663
StyD4I CCNGG 1 cut(s) 602
StyI CCWWGG 2 cut(s) 406, 543
TaaI ACNGT 2 cut(s) 50, 527
TaiI ACGT 2 cut(s) 203, 390
TaqI TCGA 2 cut(s) 97, 663
TasI AATT 8 cut(s) 83, 155, 210, 268, 291, 306, 378, 471
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 2 cut(s) 79, 626
Tru1I TTAA 4 cut(s) 224, 305, 311, 459
Tru9I TTAA 4 cut(s) 224, 305, 311, 459
TscAI CASTG 1 cut(s) 482
TseI GCWGC 3 cut(s) 9, 239, 560
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 1 cut(s) 482
VpaK11BI GGWCC 2 cut(s) 300, 466
XagI CCTNNNNNAGG 1 cut(s) 280
XapI RAATTY 3 cut(s) 155, 268, 291
XmaJI CCTAGG 1 cut(s) 406
XspI CTAG 3 cut(s) 282, 287, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.