Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000732

Physical Location & Seq

Genomic Coordinates Forward (+)

37230089 .. 37230783

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G436700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGTTAGGGAGACCCTTGTTCAGTTGTGGAACAACATGGAGGACGCGGTTGTTTATAGGAAGGTCCAAATTCCATGGACAAAGGAGCAGGTAATGGCTGAGTTCAAAAGATTGGACAAAGATGGAGATGACAGGATTTCCAAGGAAGAGCTGAAGGCAGCCTTCGACAAGTTCGGGTCGCGTTGGGGTTCTTTCAGAGCTTGGAGAGCCCTCTGCCACGCCGATGCCAACAAGGACGGGTTCATTTCTATGGAGGAGTTCACCGATCTCCTCAACTATGCTTTGAAATGTGGGTATAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

102

Amino Acids

11.91

Weight (kDa)

6.58

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000732)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica	Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis	pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis	RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata	RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora	Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa	Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha	Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana	Rw0G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AccII	CGCG	2 cut(s)	47, 181
AciI	CCGC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	106, 286
AluBI	AGCT	2 cut(s)	151, 200
AluI	AGCT	2 cut(s)	151, 200
Alw26I	GTCTC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	5
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmsI	GCATC	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	74, 141
BseDI	CCNNGG	2 cut(s)	74, 141
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	2 cut(s)	260, 269
BseXI	GCAGC	1 cut(s)	170
Bsh1236I	CGCG	2 cut(s)	47, 181
BsmAI	GTCTC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	265
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	47, 181
BspMI	ACCTGC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	74, 141
BssMI	GATC	1 cut(s)	265
BssT1I	CCWWGG	2 cut(s)	74, 141
Bst6I	CTCTTC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	74
BstFNI	CGCG	2 cut(s)	47, 181
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstUI	CGCG	2 cut(s)	47, 181
BstV1I	GCAGC	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	53
CviAII	CATG	2 cut(s)	37, 75
CviJI	RGCY	5 cut(s)	98, 151, 161, 200, 209
CviKI_1	RGCY	5 cut(s)	98, 151, 161, 200, 209
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	74, 141
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	173
EcoT14I	CCWWGG	2 cut(s)	74, 141
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	74, 141
FaeI	CATG	2 cut(s)	40, 78
FaiI	YATR	7 cut(s)	38, 57, 76, 251, 279, 297, 304
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	2 cut(s)	36, 74
Fnu4HI	GCNGC	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	159
HgaI	GACGC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	40, 78
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	3 cut(s)	55, 148, 172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	40, 78
Kzo9I	GATC	1 cut(s)	265
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	2 cut(s)	74, 118
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	214
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	4 cut(s)	34, 221, 247, 281
MslI	CAYNNNNRTG	2 cut(s)	222, 248
MvnI	CGCG	2 cut(s)	47, 181
MwoI	GCNNNNNNNGC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	40, 78
PciSI	GCTCTTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	64
RseI	CAYNNNNRTG	2 cut(s)	222, 248
SapI	GCTCTTC	1 cut(s)	141
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	4 cut(s)	66, 93, 153, 202
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	2 cut(s)	222, 248
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	74, 141
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	69
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.