Rh7CG412100

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000732
Physical Location & Seq
Forward (+)
52908921 .. 52909490
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG412100.1

Sequence Viewer

Length: 570 bp
ATGTTTAACAATTCATGTGTGCAGCAGGGTTGTGATGCCTCGATCCTGTTGGACGCGACACCATCTGGTGAGCCTATAGAGAAAACATCACTAGCCAATAGTGAAACACAAAGAGGTCTTGAGGTTATTAATGAGATCAAGGTCCAGGTAGAGCAGGAGAGCTCCCAAACTGTTTCCTGCGCTGACATATTAGCATTTGCTGCTCGAGAAGCCATTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAACTGGTCGCCGTGACAGTAGGACTTCACGTACTTCATATGTCAATTTCAACCTCCCTACACCTGTAACGCCTCTAAAAGACATTACATACATGTTCGCGAGGAGAAATCTCACACTAGAAGATATGGTTGTTTCGTCCGGTGCACACTCCATTGGTGAAGCACAATGCACCCAATTGAAGACAGACTACAAATATAGCGAAGCTCAGCCCCGAGACCCTTCCCTGGACCCAACCTATGGTGATGAGCTAGGTGGAAAGTGCCCAGCACCAGACACATTCATTTCCTGCAGAGCAAGCATTACGTATAATGGTGGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

189

Amino Acids

20.59

Weight (kDa)

4.95

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 4 - 173 4.9e-45 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 485
AccII CGCG 2 cut(s) 56, 347
AclWI GGATC 1 cut(s) 37
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 472, 485
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 2 cut(s) 298, 427
AjnI CCWGG 2 cut(s) 144, 471
AluBI AGCT 3 cut(s) 162, 452, 496
AluI AGCT 3 cut(s) 162, 452, 496
Alw21I GWGCWC 2 cut(s) 164, 394
Alw26I GTCTC 1 cut(s) 456
Alw44I GTGCAC 1 cut(s) 390
AlwI GGATC 1 cut(s) 37
Ama87I CYCGRG 2 cut(s) 204, 459
AoxI GGCC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 390
ApeKI GCWGC 2 cut(s) 22, 200
AseI ATTAAT 1 cut(s) 129
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 142, 475
AsuHPI GGTGA 3 cut(s) 80, 416, 500
AvaI CYCGRG 2 cut(s) 204, 459
AvaII GGWCC 2 cut(s) 142, 475
BaeGI GKGCMC 2 cut(s) 394, 512
BanII GRGCYC 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 419, 451
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 2 cut(s) 164, 394
BbvI GCAGC 2 cut(s) 34, 187
BccI CCATC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 2 cut(s) 146, 473
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 4 cut(s) 92, 221, 365, 497
BfmI CTRYAG 2 cut(s) 75, 535
BisI GCNGC 2 cut(s) 23, 201
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 2 cut(s) 24, 202
Bme1390I CCNGG 2 cut(s) 146, 473
Bme18I GGWCC 2 cut(s) 142, 475
BmeT110I CYCGRG 2 cut(s) 204, 459
BmgT120I GGNCC 2 cut(s) 142, 475
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 146, 473
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 434
Bpu1102I GCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 140
BsaAI YACGTR 2 cut(s) 278, 552
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 386
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 485
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 256
BseBI CCWGG 2 cut(s) 146, 473
BseDI CCNNGG 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 472, 485
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 364
BseSI GKGCMC 2 cut(s) 394, 512
BseXI GCAGC 2 cut(s) 34, 187
BseYI CCCAGC 1 cut(s) 511
BsgI GTGCAG 1 cut(s) 41
Bsh1236I CGCG 2 cut(s) 56, 347
BshFI GGCC 1 cut(s) 228
BsiHKAI GWGCWC 2 cut(s) 164, 394
BsiHKCI CYCGRG 2 cut(s) 204, 459
BsiSI CCGG 2 cut(s) 225, 387
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 472, 485
BsmAI GTCTC 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 2 cut(s) 204, 459
Bsp1286I GDGCHC 3 cut(s) 164, 394, 512
Bsp143I GATC 2 cut(s) 42, 135
Bsp1720I GCTNAGC 1 cut(s) 453
Bsp68I TCGCGA 1 cut(s) 347
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 466
BspFNI CGCG 2 cut(s) 56, 347
BspLI GGNNCC 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 539
BspPI GGATC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 2 cut(s) 42, 135
Bst2UI CCWGG 2 cut(s) 146, 473
Bst4CI ACNGT 2 cut(s) 172, 266
BstAPI GCANNNNNTGC 1 cut(s) 200
BstBAI YACGTR 2 cut(s) 278, 552
BstC8I GCNNGC 2 cut(s) 226, 544
BstDEI CTNAG 1 cut(s) 453
BstFNI CGCG 2 cut(s) 56, 347
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 2 cut(s) 45, 138
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 2 cut(s) 42, 135
BstMWI GCNNNNNNNGC 3 cut(s) 200, 209, 543
BstNI CCWGG 2 cut(s) 146, 473
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 144, 471
BstSFI CTRYAG 2 cut(s) 75, 535
BstSLI GKGCMC 2 cut(s) 394, 512
BstSNI TACGTA 1 cut(s) 552
BstUI CGCG 2 cut(s) 56, 347
BstV1I GCAGC 2 cut(s) 34, 187
BstV2I GAAGAC 1 cut(s) 434
BsuRI GGCC 1 cut(s) 228
BtuMI TCGCGA 1 cut(s) 347
Cac8I GCNNGC 2 cut(s) 226, 544
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 142, 475
CseI GACGC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 279
CviAII CATG 2 cut(s) 15, 340
CviJI RGCY 9 cut(s) 73, 95, 162, 212, 224, 228, 452, 457, 496
CviKI_1 RGCY 9 cut(s) 73, 95, 162, 212, 224, 228, 452, 457, 496
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 453
DpnI GATC 2 cut(s) 44, 137
DpnII GATC 2 cut(s) 42, 135
Ecl136II GAGCTC 1 cut(s) 162
Eco105I TACGTA 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 2 cut(s) 142, 475
Eco53kI GAGCTC 1 cut(s) 162
Eco88I CYCGRG 2 cut(s) 204, 459
EcoICRI GAGCTC 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 144, 471
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 2 cut(s) 18, 343
FaqI GGGAC 1 cut(s) 230
FatI CATG 2 cut(s) 14, 339
FauNDI CATATG 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 23, 201
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 23, 201
FspBI CTAG 4 cut(s) 92, 221, 365, 497
GlaI GCGC 1 cut(s) 181
GluI GCNGC 2 cut(s) 23, 201
GsaI CCCAGC 1 cut(s) 515
HaeIII GGCC 1 cut(s) 228
HapII CCGG 2 cut(s) 225, 387
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 182
Hin1II CATG 2 cut(s) 18, 343
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HpaII CCGG 2 cut(s) 225, 387
HphI GGTGA 3 cut(s) 80, 416, 500
Hpy166II GTNNAC 2 cut(s) 392, 563
Hpy188III TCNNGA 3 cut(s) 119, 206, 346
Hpy8I GTNNAC 2 cut(s) 392, 563
HpyAV CCTTC 1 cut(s) 477
HpyCH4III ACNGT 2 cut(s) 172, 266
HpyCH4IV ACGT 2 cut(s) 277, 551
HpyCH4V TGCA 4 cut(s) 22, 392, 417, 537
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 209, 543
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 2 cut(s) 277, 551
Hsp92II CATG 2 cut(s) 18, 343
HspAI GCGC 1 cut(s) 180
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 42, 135
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 2 cut(s) 34, 187
LweI GCATC 1 cut(s) 25
MaeI CTAG 4 cut(s) 92, 221, 365, 497
MaeII ACGT 2 cut(s) 277, 551
MaeIII GTNAC 3 cut(s) 236, 260, 313
MalI GATC 2 cut(s) 44, 137
MboI GATC 2 cut(s) 42, 135
MboII GAAGA 2 cut(s) 380, 439
MfeI CAATTG 1 cut(s) 422
MhlI GDGCHC 3 cut(s) 164, 394, 512
MluCI AATT 3 cut(s) 10, 292, 422
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 6 cut(s) 49, 107, 115, 311, 330, 342
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 2 cut(s) 6, 129
MspI CCGG 2 cut(s) 225, 387
MspR9I CCNGG 2 cut(s) 146, 473
MunI CAATTG 1 cut(s) 422
MvaI CCWGG 2 cut(s) 146, 473
MvnI CGCG 2 cut(s) 56, 347
MwoI GCNNNNNNNGC 3 cut(s) 200, 209, 543
NaeI GCCGGC 1 cut(s) 226
NdeI CATATG 1 cut(s) 286
NdeII GATC 2 cut(s) 42, 135
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 2 cut(s) 18, 343
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 2 cut(s) 236, 260
NruI TCGCGA 1 cut(s) 347
NspI RCATGY 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 204
PciI ACATGT 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 226
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 2 cut(s) 24, 202
Ppu21I YACGTR 2 cut(s) 278, 552
PscI ACATGT 1 cut(s) 339
PshBI ATTAAT 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 144, 471
PspFI CCCAGC 1 cut(s) 511
PspGI CCWGG 2 cut(s) 144, 471
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 2 cut(s) 142, 475
PstI CTGCAG 1 cut(s) 539
RruI TCGCGA 1 cut(s) 347
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SacI GAGCTC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 6, 129
SatI GCNGC 2 cut(s) 23, 201
Sau3AI GATC 2 cut(s) 42, 135
Sau96I GGNCC 2 cut(s) 142, 475
ScrFI CCNGG 2 cut(s) 146, 473
SduI GDGCHC 3 cut(s) 164, 394, 512
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 2 cut(s) 75, 535
Sfr274I CTCGAG 1 cut(s) 204
SinI GGWCC 2 cut(s) 142, 475
SlaI CTCGAG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 119, 204
SmoI CTYRAG 2 cut(s) 119, 204
SnaBI TACGTA 1 cut(s) 552
Sse9I AATT 3 cut(s) 10, 292, 422
SspMI CTAG 4 cut(s) 92, 221, 365, 497
SstI GAGCTC 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 144, 471
TaaI ACNGT 2 cut(s) 172, 266
TaiI ACGT 2 cut(s) 280, 554
TaqI TCGA 2 cut(s) 41, 205
TasI AATT 3 cut(s) 10, 292, 422
Tru1I TTAA 2 cut(s) 6, 129
Tru9I TTAA 2 cut(s) 6, 129
TseFI GTSAC 2 cut(s) 236, 260
TseI GCWGC 2 cut(s) 22, 200
Tsp45I GTSAC 2 cut(s) 236, 260
TspDTI ATGAA 2 cut(s) 273, 517
Van91I CCANNNNNTGG 1 cut(s) 485
VneI GTGCAC 1 cut(s) 390
VpaK11BI GGWCC 2 cut(s) 142, 475
VspI ATTAAT 1 cut(s) 129
XceI RCATGY 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 204
XspI CTAG 4 cut(s) 92, 221, 365, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.