RchiOBHm_Chr7g0227521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000732
Physical Location & Seq
Reverse (-)
50748236 .. 50748713
478 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20379

Sequence Viewer

Length: 309 bp
ATGGATCCCTGCAGTCAAGGAACAGTGGAGGCAAAGAAGTTGAGCAAGCCATATGTTGATCACGTAGCCATTGTTGCAAAACCTCATCTTGAAAAAGTTAAAAGTGGTTTTGAAGATCTATACAAAGAAGGTGGTTCAGGCCTACGAGAAATTTCTCAAAATCCGCTTCCACAAATCATCATCAAGTATTGGCTTTTTGTCATCTGTGTAACTTTTTGTGATAAGGACCAATCTCTATGGTTTTTTGTAATGCTGACGGTCCTTAAAAACAATGTCATGTTCTGTACTTATAAGCACCGGTTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.74

Weight (kDa)

8.69

Isoelectric Point (pI)

25.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AciI CCGC 1 cut(s) 164
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 150
AfaI GTAC 1 cut(s) 286
AgeI ACCGGT 1 cut(s) 297
AgsI TTSAA 2 cut(s) 92, 113
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 150
AsiGI ACCGGT 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 226, 259
AvaII GGWCC 2 cut(s) 226, 259
BamHI GGATCC 1 cut(s) 4
BclI TGATCA 1 cut(s) 58
BfmI CTRYAG 1 cut(s) 10
BglII AGATCT 1 cut(s) 115
Bme18I GGWCC 2 cut(s) 226, 259
BmgT120I GGNCC 2 cut(s) 226, 259
BmiI GGNNCC 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 297
BshFI GGCC 1 cut(s) 141
BshTI ACCGGT 1 cut(s) 297
BsiSI CCGG 1 cut(s) 298
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 4, 58, 115
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 141
BspHI TCATGA 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 14
BspPI GGATC 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 297
BssMI GATC 3 cut(s) 4, 58, 115
Bst4CI ACNGT 2 cut(s) 25, 259
BstBAI YACGTR 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 47
BstKTI GATC 3 cut(s) 7, 61, 118
BstMBI GATC 3 cut(s) 4, 58, 115
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 10
BstX2I RGATCY 2 cut(s) 4, 115
BstYI RGATCY 2 cut(s) 4, 115
BsuRI GGCC 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 47
CciI TCATGA 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 226, 259
Csp6I GTAC 1 cut(s) 285
CspAI ACCGGT 1 cut(s) 297
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 2 cut(s) 277, 306
CviJI RGCY 4 cut(s) 49, 68, 141, 193
CviKI_1 RGCY 4 cut(s) 49, 68, 141, 193
CviQI GTAC 1 cut(s) 285
DpnI GATC 3 cut(s) 6, 60, 117
DpnII GATC 3 cut(s) 4, 58, 115
Eco147I AGGCCT 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 226, 259
FaeI CATG 2 cut(s) 280, 309
FaiI YATR 7 cut(s) 52, 54, 121, 238, 278, 291, 307
FatI CATG 2 cut(s) 276, 305
FauNDI CATATG 1 cut(s) 52
FbaI TGATCA 1 cut(s) 58
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 298
Hin1II CATG 2 cut(s) 280, 309
HpaII CCGG 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 89, 306
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 25, 259
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 12, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 2 cut(s) 280, 309
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 3 cut(s) 4, 58, 115
LpnPI CCDG 2 cut(s) 22, 123
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 208
MalI GATC 3 cut(s) 6, 60, 117
MboI GATC 3 cut(s) 4, 58, 115
MboII GAAGA 1 cut(s) 125
MflI RGATCY 2 cut(s) 4, 115
MluCI AATT 1 cut(s) 150
MnlI CCTC 2 cut(s) 22, 93
MseI TTAA 2 cut(s) 99, 264
MspI CCGG 1 cut(s) 298
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeI CATATG 1 cut(s) 52
NdeII GATC 3 cut(s) 4, 58, 115
NlaIII CATG 2 cut(s) 280, 309
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 1 cut(s) 305
PceI AGGCCT 1 cut(s) 141
PinAI ACCGGT 1 cut(s) 297
Ppu21I YACGTR 1 cut(s) 64
PsiI TTATAA 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 226, 259
PstI CTGCAG 1 cut(s) 14
PsuI RGATCY 2 cut(s) 4, 115
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 99, 264
Sau3AI GATC 3 cut(s) 4, 58, 115
Sau96I GGNCC 2 cut(s) 226, 259
SetI ASST 3 cut(s) 66, 85, 133
SfcI CTRYAG 1 cut(s) 10
SgeI CNNG 9 cut(s) 21, 29, 58, 74, 101, 150, 158, 196, 289
SinI GGWCC 2 cut(s) 226, 259
Sse9I AATT 1 cut(s) 150
SseBI AGGCCT 1 cut(s) 141
SsiI CCGC 1 cut(s) 164
StuI AGGCCT 1 cut(s) 141
TaaI ACNGT 2 cut(s) 25, 259
TaiI ACGT 1 cut(s) 66
TasI AATT 1 cut(s) 150
TatI WGTACW 1 cut(s) 284
Tru1I TTAA 2 cut(s) 99, 264
Tru9I TTAA 2 cut(s) 99, 264
TscAI CASTG 1 cut(s) 30
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 226, 259
XapI RAATTY 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.