Rroxscaffold_7G00160860

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000732
Physical Location & Seq
Forward (+)
3748739 .. 3751789
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160860.1

Sequence Viewer

Length: 570 bp
ATGGTTAGGGTTGTCCATCTTCCACCTTCTAAACAAGAACTAGAAAGTTCTGCTTCTTGTTTTGCAGCGGGCATGACCTGCTGGCCTGAGCAGACGGCCATTAAGAAGGTCCCAACAATTCACTGGAGCAAGGAGCAAGTCCACGATCTTTTCAAAAGCTTTGATAGGAACGGTGACGGAAAACTCTCCAAGGAAGAGCTCAAGGCAGCATTTCGGAAACTCGGATCTCGTTGGAGCTCTTACAGAGCTAGGAGAGCGCTACGCCATGCAGATTCCAATGGCGACAGCATCATCTCTAGCTGGCCTGAGCAGACGGTCATTAAGAAGGTCCCAGTTCTCTGGAGCAAGGAGCAAATCTGCGATGTTTTCAAAAGCTTTGATAGGAACGGTGACGGCAAACTGTCCAAGGATGAGCTCAAGGCAGCCTTTCGGAATCTCGGATCGCGTTGGAGCTCTTACAGAGCTAGGAGAGCGTTACGTCATGTAGATGCCAACGGCGACGGCATCATATCTAATGAAGAGCTCAACGATCTTATCAACTATGCCCTAGAATGTGGTTATAAGCTATAA

Protein Analysis

189

Amino Acids

21.51

Weight (kDa)

9.39

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 45 - 99 1.7e-07 EF-hand domain pair
EF-hand_6 PF13405 47 - 75 1.3e-08 EF-hand domain
EF-hand_1 PF00036 47 - 74 1.5e-07 EF hand domain
EF-hand_5 PF13202 49 - 69 1.4e-07 EF hand
EF-hand_7 PF13499 116 - 176 5.7e-10 EF-hand domain pair
EF-hand_6 PF13405 119 - 147 2e-08 EF-hand domain
EF-hand_1 PF00036 121 - 145 6.3e-07 EF hand domain
EF-hand_5 PF13202 121 - 141 4.5e-07 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
Acc36I ACCTGC 1 cut(s) 86
AccII CGCG 1 cut(s) 445
AciI CCGC 1 cut(s) 68
AclWI GGATC 2 cut(s) 232, 448
AcoI YGGCCR 1 cut(s) 96
AfeI AGCGCT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 154, 370
Alw21I GWGCWC 5 cut(s) 201, 239, 417, 455, 525
AlwI GGATC 2 cut(s) 232, 448
Aor51HI AGCGCT 1 cut(s) 258
AoxI GGCC 3 cut(s) 83, 96, 302
ApeKI GCWGC 3 cut(s) 65, 206, 422
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 109, 328
AsuHPI GGTGA 2 cut(s) 185, 401
AvaII GGWCC 2 cut(s) 109, 328
BanII GRGCYC 5 cut(s) 201, 239, 417, 455, 525
Bbv12I GWGCWC 5 cut(s) 201, 239, 417, 455, 525
BbvI GCAGC 3 cut(s) 77, 218, 434
BccI CCATC 1 cut(s) 24
BceAI ACGGC 4 cut(s) 111, 409, 511, 517
BfaI CTAG 5 cut(s) 41, 249, 297, 465, 548
BfoI RGCGCY 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 3 cut(s) 66, 207, 423
BlsI GCNGC 3 cut(s) 67, 208, 424
Bme18I GGWCC 2 cut(s) 109, 328
BmgT120I GGNCC 2 cut(s) 109, 328
BmiI GGNNCC 2 cut(s) 111, 330
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 3 cut(s) 297, 478, 513
BmuI ACTGGG 1 cut(s) 326
BpmI CTGGAG 2 cut(s) 145, 361
Bpu10I CCTNAGC 2 cut(s) 87, 306
BpuEI CTTGAG 2 cut(s) 185, 401
BsaJI CCNNGG 2 cut(s) 189, 405
Bse1I ACTGG 2 cut(s) 128, 332
BseDI CCNNGG 2 cut(s) 189, 405
BseGI GGATG 1 cut(s) 415
BseMII CTCAG 2 cut(s) 78, 297
BseNI ACTGG 2 cut(s) 128, 332
BseXI GCAGC 3 cut(s) 77, 218, 434
Bsh1236I CGCG 1 cut(s) 445
BshFI GGCC 3 cut(s) 85, 98, 304
BsiHKAI GWGCWC 5 cut(s) 201, 239, 417, 455, 525
BslFI GGGAC 2 cut(s) 95, 314
BsmFI GGGAC 2 cut(s) 95, 314
BsnI GGCC 3 cut(s) 85, 98, 304
Bsp1286I GDGCHC 5 cut(s) 201, 239, 417, 455, 525
Bsp143I GATC 4 cut(s) 145, 224, 440, 529
BspACI CCGC 1 cut(s) 68
BspANI GGCC 3 cut(s) 85, 98, 304
BspCNI CTCAG 2 cut(s) 79, 298
BspFNI CGCG 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 111, 330
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 232, 448
BspQI GCTCTTC 2 cut(s) 189, 513
BsrI ACTGG 2 cut(s) 128, 332
BssECI CCNNGG 2 cut(s) 189, 405
BssMI GATC 4 cut(s) 145, 224, 440, 529
BssT1I CCWWGG 2 cut(s) 189, 405
Bst4CI ACNGT 4 cut(s) 173, 316, 389, 402
Bst6I CTCTTC 2 cut(s) 189, 513
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 70, 83, 302
BstDEI CTNAG 2 cut(s) 87, 306
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 445
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 4 cut(s) 148, 227, 443, 532
BstMBI GATC 4 cut(s) 145, 224, 440, 529
BstMWI GCNNNNNNNGC 3 cut(s) 78, 254, 470
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 3 cut(s) 77, 218, 434
BstX2I RGATCY 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 1 cut(s) 224
BsuRI GGCC 3 cut(s) 85, 98, 304
BtgZI GCGATG 1 cut(s) 375
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 70, 83, 302
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 109, 328
CviAII CATG 3 cut(s) 73, 266, 482
DdeI CTNAG 2 cut(s) 87, 306
DpnI GATC 4 cut(s) 147, 226, 442, 531
DpnII GATC 4 cut(s) 145, 224, 440, 529
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 189, 513
EarI CTCTTC 2 cut(s) 189, 513
Ecl136II GAGCTC 5 cut(s) 199, 237, 415, 453, 523
Eco130I CCWWGG 2 cut(s) 189, 405
Eco24I GRGCYC 5 cut(s) 201, 239, 417, 455, 525
Eco47I GGWCC 2 cut(s) 109, 328
Eco47III AGCGCT 1 cut(s) 258
Eco53kI GAGCTC 5 cut(s) 199, 237, 415, 453, 523
EcoICRI GAGCTC 5 cut(s) 199, 237, 415, 453, 523
EcoO109I RGGNCCY 2 cut(s) 109, 328
EcoT14I CCWWGG 2 cut(s) 189, 405
EcoT38I GRGCYC 5 cut(s) 201, 239, 417, 455, 525
ErhI CCWWGG 2 cut(s) 189, 405
FaeI CATG 3 cut(s) 76, 269, 485
FaiI YATR 7 cut(s) 74, 267, 483, 509, 543, 561, 568
FalI AAGNNNNNCTT 4 cut(s) 37, 69, 410, 442
FaqI GGGAC 2 cut(s) 95, 314
FatI CATG 3 cut(s) 72, 265, 481
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 66, 207, 423
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 5 cut(s) 201, 239, 417, 455, 525
Fsp4HI GCNGC 3 cut(s) 66, 207, 423
FspBI CTAG 5 cut(s) 41, 249, 297, 465, 548
GlaI GCGC 1 cut(s) 258
GluI GCNGC 3 cut(s) 66, 207, 423
GsuI CTGGAG 2 cut(s) 145, 361
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 3 cut(s) 85, 98, 304
HhaI GCGC 1 cut(s) 259
Hin1II CATG 3 cut(s) 76, 269, 485
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 2 cut(s) 157, 373
HinfI GANTC 2 cut(s) 272, 433
HphI GGTGA 2 cut(s) 185, 401
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 4 cut(s) 216, 224, 432, 440
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 3 cut(s) 36, 100, 319
HpyCH4III ACNGT 4 cut(s) 173, 316, 389, 402
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 2 cut(s) 65, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 254, 470
HpyF3I CTNAG 2 cut(s) 87, 306
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 3 cut(s) 76, 269, 485
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 4 cut(s) 145, 224, 440, 529
LguI GCTCTTC 2 cut(s) 189, 513
LmnI GCTCC 6 cut(s) 126, 133, 234, 342, 349, 450
LpnPI CCDG 8 cut(s) 67, 91, 99, 109, 286, 318, 325, 345
Lsp1109I GCAGC 3 cut(s) 77, 218, 434
LweI GCATC 3 cut(s) 297, 478, 513
MaeI CTAG 5 cut(s) 41, 249, 297, 465, 548
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 3 cut(s) 173, 389, 474
MalI GATC 4 cut(s) 147, 226, 442, 531
MboI GATC 4 cut(s) 145, 224, 440, 529
MboII GAAGA 3 cut(s) 11, 206, 530
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 5 cut(s) 201, 239, 417, 455, 525
MluCI AATT 1 cut(s) 117
MmeI TCCRAC 2 cut(s) 212, 428
MseI TTAA 2 cut(s) 102, 321
MslI CAYNNNNRTG 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 68
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 3 cut(s) 78, 254, 470
NdeII GATC 4 cut(s) 145, 224, 440, 529
NlaIII CATG 3 cut(s) 76, 269, 485
NlaIV GGNNCC 2 cut(s) 111, 330
NmuCI GTSAC 2 cut(s) 173, 389
PciSI GCTCTTC 2 cut(s) 189, 513
PfeI GAWTC 2 cut(s) 272, 433
PkrI GCNGC 3 cut(s) 67, 208, 424
PpuMI RGGWCCY 2 cut(s) 109, 328
PsiI TTATAA 1 cut(s) 561
Psp124BI GAGCTC 5 cut(s) 201, 239, 417, 455, 525
Psp5II RGGWCCY 2 cut(s) 109, 328
PspN4I GGNNCC 2 cut(s) 111, 330
PspPI GGNCC 2 cut(s) 109, 328
PspPPI RGGWCCY 2 cut(s) 109, 328
PsuI RGATCY 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 486
SacI GAGCTC 5 cut(s) 201, 239, 417, 455, 525
SapI GCTCTTC 2 cut(s) 189, 513
SaqAI TTAA 2 cut(s) 102, 321
SatI GCNGC 3 cut(s) 66, 207, 423
Sau3AI GATC 4 cut(s) 145, 224, 440, 529
Sau96I GGNCC 2 cut(s) 109, 328
SduI GDGCHC 5 cut(s) 201, 239, 417, 455, 525
SfaNI GCATC 3 cut(s) 297, 478, 513
SinI GGWCC 2 cut(s) 109, 328
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 2 cut(s) 200, 416
SmoI CTYRAG 2 cut(s) 200, 416
Sse9I AATT 1 cut(s) 117
SsiI CCGC 1 cut(s) 68
SspMI CTAG 5 cut(s) 41, 249, 297, 465, 548
SstI GAGCTC 5 cut(s) 201, 239, 417, 455, 525
StyI CCWWGG 2 cut(s) 189, 405
TaaI ACNGT 4 cut(s) 173, 316, 389, 402
TaiI ACGT 1 cut(s) 481
TasI AATT 1 cut(s) 117
TfiI GAWTC 2 cut(s) 272, 433
Tru1I TTAA 2 cut(s) 102, 321
Tru9I TTAA 2 cut(s) 102, 321
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 2 cut(s) 173, 389
TseI GCWGC 3 cut(s) 65, 206, 422
Tsp45I GTSAC 2 cut(s) 173, 389
TspDTI ATGAA 1 cut(s) 531
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 109, 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XspI CTAG 5 cut(s) 41, 249, 297, 465, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.