Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000732

Physical Location & Seq

Genomic Coordinates Forward (+)

25619795 .. 25620399

Gene Structure 605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTGAGGTTTGTCCAATATCCCTTTGAAAAATCTGCTGCTTGTTTCACACCGACCCTCAGCTGGCATCATGAGCCGACGGTCGTTAATAAGAAGGTCCCAGCTCAGTGGAGCCCGGAGCAGGTCCGTGATCTTTTCAAAAGCGCTGACAAGAATGGTGACGGCAAACTCTCCAAGGAGGAGCTCAAGGCAGCCTTTCGGAGACTCGGATCGCGTTGGAGCTCTTTCAGAGCTAGGAGAGCTTTACGCCATGTAGATGCCAACGGCGACGGCGTCATCTCTAATGAGGAGCTCAACGACCTTATCAACTATGCCCTACAATGTGGTTATAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

113

Amino Acids

12.83

Weight (kDa)

9.43

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	40 - 97	8.2e-09	EF-hand domain pair
EF-hand_1	PF00036	42 - 69	8.2e-08	EF hand domain
EF-hand_6	PF13405	42 - 70	4.6e-08	EF-hand domain
EF-hand_5	PF13202	43 - 64	6.2e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000732)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica	Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis	pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis	RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata	RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora	Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa	Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha	Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana	Rw0G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	112
AccII	CGCG	1 cut(s)	214
AclWI	GGATC	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	273
AfeI	AGCGCT	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	63, 121
AgsI	TTSAA	2 cut(s)	29, 139
AluBI	AGCT	8 cut(s)	63, 104, 184, 222, 233, 242, 292, 334
AluI	AGCT	8 cut(s)	63, 104, 184, 222, 233, 242, 292, 334
Alw21I	GWGCWC	3 cut(s)	186, 224, 294
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	217
Aor51HI	AGCGCT	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	38, 191
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	97, 124
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	16, 170
AvaII	GGWCC	2 cut(s)	97, 124
BanII	GRGCYC	4 cut(s)	116, 186, 224, 294
Bbv12I	GWGCWC	3 cut(s)	186, 224, 294
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	25, 203
BceAI	ACGGC	3 cut(s)	178, 280, 286
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	2 cut(s)	39, 192
BlsI	GCNGC	2 cut(s)	40, 193
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	97, 124
BmgT120I	GGNCC	2 cut(s)	97, 124
BmiI	GGNNCC	2 cut(s)	99, 113
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	76, 247
Bpu10I	CCTNAGC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 121
BseDI	CCNNGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	63, 121
BseMII	CTCAG	2 cut(s)	73, 119
BseRI	GAGGAG	2 cut(s)	194, 302
BseXI	GCAGC	2 cut(s)	25, 203
BseYI	CCCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	214
Bsh1285I	CGRYCG	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	3 cut(s)	186, 224, 294
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	63, 121
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	83
Bsp1286I	GDGCHC	4 cut(s)	116, 186, 224, 294
Bsp143I	GATC	2 cut(s)	130, 209
BspCNI	CTCAG	2 cut(s)	72, 118
BspFNI	CGCG	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	99, 113
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	130, 209
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	59, 105
BstFNI	CGCG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	133, 212
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	130, 209
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 239
BstSCI	CCNGG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	25, 203
BstXI	CCANNNNNNTGG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	65
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	97, 124
CseI	GACGC	1 cut(s)	262
CviAII	CATG	2 cut(s)	71, 251
DdeI	CTNAG	2 cut(s)	59, 105
DpnI	GATC	2 cut(s)	132, 211
DpnII	GATC	2 cut(s)	130, 209
Ecl136II	GAGCTC	3 cut(s)	184, 222, 292
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	4 cut(s)	116, 186, 224, 294
Eco47I	GGWCC	2 cut(s)	97, 124
Eco47III	AGCGCT	1 cut(s)	145
Eco53kI	GAGCTC	3 cut(s)	184, 222, 292
EcoICRI	GAGCTC	3 cut(s)	184, 222, 292
EcoO109I	RGGNCCY	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	4 cut(s)	116, 186, 224, 294
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	74, 254
FaiI	YATR	4 cut(s)	72, 252, 312, 330
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	70, 250
Fnu4HI	GCNGC	2 cut(s)	39, 192
FriOI	GRGCYC	4 cut(s)	116, 186, 224, 294
Fsp4HI	GCNGC	2 cut(s)	39, 192
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	39, 192
GsaI	CCCAGC	1 cut(s)	104
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	74, 254
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	2 cut(s)	16, 170
Hpy188I	TCNGA	3 cut(s)	201, 209, 230
Hpy188III	TCNNGA	1 cut(s)	71
Hpy99I	CGWCG	2 cut(s)	82, 272
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 239
HpyF3I	CTNAG	2 cut(s)	59, 105
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	74, 254
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	130, 209
LmnI	GCTCC	5 cut(s)	111, 118, 181, 219, 289
LpnPI	CCDG	4 cut(s)	49, 107, 114, 129
Lsp1109I	GCAGC	2 cut(s)	25, 203
LweI	GCATC	2 cut(s)	76, 247
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	132, 211
MboI	GATC	2 cut(s)	130, 209
MhlI	GDGCHC	4 cut(s)	116, 186, 224, 294
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	3 cut(s)	68, 172, 280
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	73, 239
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	2 cut(s)	130, 209
NlaIII	CATG	2 cut(s)	74, 254
NlaIV	GGNNCC	2 cut(s)	99, 113
NmuCI	GTSAC	1 cut(s)	158
PagI	TCATGA	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	40, 193
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PpuMI	RGGWCCY	1 cut(s)	97
PsiI	TTATAA	1 cut(s)	330
Psp124BI	GAGCTC	3 cut(s)	186, 224, 294
Psp5II	RGGWCCY	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	99, 113
PspPI	GGNCC	2 cut(s)	97, 124
PspPPI	RGGWCCY	1 cut(s)	97
PsyI	GACNNNGTC	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	3 cut(s)	186, 224, 294
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	39, 192
Sau3AI	GATC	2 cut(s)	130, 209
Sau96I	GGNCC	2 cut(s)	97, 124
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	4 cut(s)	116, 186, 224, 294
SfaNI	GCATC	2 cut(s)	76, 247
SinI	GGWCC	2 cut(s)	97, 124
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	3 cut(s)	186, 224, 294
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	38, 191
Tsp45I	GTSAC	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	113
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	97, 124
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.