Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000732

Physical Location & Seq

Genomic Coordinates Reverse (-)

51667020 .. 51667806

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG394500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCCTCGGCAAAGAGAGTTCAAAGGTGGAATTGGTGATGGGTATAAAGATCCTGATGTTTCGTACACTGAGCAGCAGATCATAACTATTTTCAAGAGCTTTGACCTGAACGGAGACGGCAAGCTGTCCTGGCATGAGGTGAAGGCTGCGTTTGCTAAACTCGGGGCGTTTTGTCCTGACTACAGAGCTTGGCGAGGACAAAGGCGTGCCGATGCCGACAAGGATGGCTTCATCTCTCTGGAGACCGAGCTCGATGAACTTGTCACCTATACCCTAAAACAAGGGTATAAACCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

99

Amino Acids

11.33

Weight (kDa)

6.57

Isoelectric Point (pI)

15.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	27 - 55	1.7e-06	EF-hand domain
EF-hand_1	PF00036	28 - 54	2.7e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000732)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica	Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis	pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis	RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata	RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora	Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa	Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha	Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana	Rw0G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	22, 94
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	99, 124, 188, 250
AluI	AGCT	4 cut(s)	99, 124, 188, 250
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	108, 236
AlwI	GGATC	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	73, 146
AsuHPI	GGTGA	3 cut(s)	47, 151, 256
AvaI	CYCGRG	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	85, 133
BccI	CCATC	2 cut(s)	32, 218
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	108, 236
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	2 cut(s)	74, 147
BlsI	GCNGC	2 cut(s)	75, 148
Bme1390I	CCNGG	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	85, 133
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	108, 236
BsmBI	CGTCTC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	49, 78
BspCNI	CTCAG	1 cut(s)	61
BspPI	GGATC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	2 cut(s)	49, 78
Bst2UI	CCWGG	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	122, 207
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	2 cut(s)	52, 81
BstMAI	GTCTC	2 cut(s)	108, 236
BstMBI	GATC	2 cut(s)	49, 78
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 152
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	85, 133
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	122, 207
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	6 cut(s)	99, 124, 146, 188, 228, 250
CviKI_1	RGCY	6 cut(s)	99, 124, 146, 188, 228, 250
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	51, 80
DpnII	GATC	2 cut(s)	49, 78
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	1 cut(s)	137
FaiI	YATR	5 cut(s)	45, 83, 135, 270, 288
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	74, 147
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	74, 147
GluI	GCNGC	2 cut(s)	74, 147
GsuI	CTGGAG	1 cut(s)	260
Hin1II	CATG	1 cut(s)	137
HphI	GGTGA	3 cut(s)	47, 151, 256
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188III	TCNNGA	4 cut(s)	53, 94, 176, 239
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 152
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	2 cut(s)	49, 78
LpnPI	CCDG	6 cut(s)	66, 115, 119, 142, 189, 224
Lsp1109I	GCAGC	2 cut(s)	85, 133
LweI	GCATC	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	51, 80
MboI	GATC	2 cut(s)	49, 78
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	1 cut(s)	30
MnlI	CCTC	3 cut(s)	15, 130, 188
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	130, 152
NdeII	GATC	2 cut(s)	49, 78
NlaIII	CATG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	75, 148
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SacI	GAGCTC	1 cut(s)	252
SatI	GCNGC	2 cut(s)	74, 147
Sau3AI	GATC	2 cut(s)	49, 78
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	28, 101, 108, 126, 141, 190, 252, 269
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	181
Sse9I	AATT	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	128
TaqI	TCGA	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	30
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	73, 146
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	220, 270
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.