Rw0G001040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00034
OG0000732
Physical Location & Seq
Forward (+)
4849 .. 5633
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001040.1

Sequence Viewer

Length: 336 bp
AAAAAAGCTGAAGCTGGACAGTGGGCTGAATACCATGTGGAAGCAGTTAAAACTAAATGGATCCCTGCAGTCAAGGAACAGTGGTCAGTGGTGAAAGCATTTGTTGAACCTCAACAAAAATTTGTTGATCCTTACTTTCAGGAGGCAAAGAAGTTGAGCAAGCCATATGTTGATCACGTAGCCATTGTTGCAAAACCTCATCTTGAAAAAGTTAAAAGTGGTTTTGAAGATCTATACAAAGCAGGTGGTTCAGGCCTACGAGAAATTTCTCAAAATCCTCTTCCACAAATCATCATCAAGTATTGGCTTTTTGTCATGCTGTGTAACTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.76

Weight (kDa)

9.04

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 233
AclWI GGATC 3 cut(s) 55, 68, 122
AcsI RAATTY 2 cut(s) 119, 264
AcuI CTGAAG 1 cut(s) 30
AgsI TTSAA 3 cut(s) 107, 206, 227
AluBI AGCT 2 cut(s) 8, 14
AluI AGCT 2 cut(s) 8, 14
AlwI GGATC 3 cut(s) 55, 68, 122
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 2 cut(s) 119, 264
AsuHPI GGTGA 1 cut(s) 103
BamHI GGATCC 1 cut(s) 60
BclI TGATCA 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 233
BglII AGATCT 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 178
BshFI GGCC 1 cut(s) 255
BsnI GGCC 1 cut(s) 255
Bsp143I GATC 4 cut(s) 60, 127, 172, 229
BspANI GGCC 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 62
BspMAI CTGCAG 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 3 cut(s) 55, 68, 122
BssMI GATC 4 cut(s) 60, 127, 172, 229
Bst4CI ACNGT 3 cut(s) 21, 81, 329
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 161
BstKTI GATC 4 cut(s) 63, 130, 175, 232
BstMBI GATC 4 cut(s) 60, 127, 172, 229
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 66
BstX2I RGATCY 2 cut(s) 60, 229
BstYI RGATCY 2 cut(s) 60, 229
BsuRI GGCC 1 cut(s) 255
BtsIMutI CAGTG 3 cut(s) 26, 86, 93
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 161
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 2 cut(s) 35, 316
CviJI RGCY 7 cut(s) 8, 14, 26, 163, 182, 255, 307
CviKI_1 RGCY 7 cut(s) 8, 14, 26, 163, 182, 255, 307
DpnI GATC 4 cut(s) 62, 129, 174, 231
DpnII GATC 4 cut(s) 60, 127, 172, 229
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 30
FaeI CATG 2 cut(s) 38, 319
FaiI YATR 5 cut(s) 36, 166, 168, 235, 317
FatI CATG 2 cut(s) 34, 315
FauNDI CATATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 172
HaeIII GGCC 1 cut(s) 255
Hin1II CATG 2 cut(s) 38, 319
HphI GGTGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 140, 203
HpyCH4III ACNGT 3 cut(s) 21, 81, 329
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 68, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 2 cut(s) 38, 319
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 4 cut(s) 60, 127, 172, 229
LpnPI CCDG 4 cut(s) 78, 125, 228, 237
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 323
MalI GATC 4 cut(s) 62, 129, 174, 231
MboI GATC 4 cut(s) 60, 127, 172, 229
MboII GAAGA 2 cut(s) 239, 272
MflI RGATCY 2 cut(s) 60, 229
MluCI AATT 2 cut(s) 119, 264
MnlI CCTC 4 cut(s) 120, 136, 207, 288
MseI TTAA 2 cut(s) 48, 213
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeI CATATG 1 cut(s) 166
NdeII GATC 4 cut(s) 60, 127, 172, 229
NlaIII CATG 2 cut(s) 38, 319
NlaIV GGNNCC 1 cut(s) 62
PaqCI CACCTGC 1 cut(s) 233
PceI AGGCCT 1 cut(s) 255
Ppu21I YACGTR 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 70
PsuI RGATCY 2 cut(s) 60, 229
SaqAI TTAA 2 cut(s) 48, 213
Sau3AI GATC 4 cut(s) 60, 127, 172, 229
SetI ASST 6 cut(s) 10, 16, 112, 180, 199, 247
SfcI CTRYAG 1 cut(s) 66
Sse9I AATT 2 cut(s) 119, 264
SseBI AGGCCT 1 cut(s) 255
StuI AGGCCT 1 cut(s) 255
TaaI ACNGT 3 cut(s) 21, 81, 329
TaiI ACGT 1 cut(s) 180
TasI AATT 2 cut(s) 119, 264
Tru1I TTAA 2 cut(s) 48, 213
Tru9I TTAA 2 cut(s) 48, 213
TscAI CASTG 3 cut(s) 26, 86, 93
TspRI CASTG 3 cut(s) 26, 86, 93
XapI RAATTY 2 cut(s) 119, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.