Rmu_co8134650.1_g000001

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8134650.1
OG0000732
Physical Location & Seq
Reverse (-)
1 .. 352
352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8134650.1_g000001.1.cds

Sequence Viewer

Length: 275 bp
atggtgcgtgatcatgtcactcatgtgactaagggtcttccgtacactgagcagcagatcagaaatactttcaaaggttttgacctgaatggagacggcaaactgtcctgggatgaggtgaaggctgcgttcgctaaactcggggcgtgtttgcccgactacagagcttggcaaggacgaagctgtgctgatgccgacaaggatggcttcatctctctcgagaccgagctcaatgaacttgtcacctatacccacaaactacagtataaatcgaa

Protein Analysis

91

Amino Acids

10.34

Weight (kDa)

6.26

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 1 cut(s) 73
AhdI GACNNNNNGTC 1 cut(s) 33
AjnI CCWGG 1 cut(s) 107
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 3 cut(s) 167, 183, 229
AluI AGCT 3 cut(s) 167, 183, 229
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 87, 215
Ama87I CYCGRG 2 cut(s) 140, 218
ApeKI GCWGC 2 cut(s) 52, 125
AsuHPI GGTGA 2 cut(s) 130, 235
AvaI CYCGRG 2 cut(s) 140, 218
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 64, 112
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 109
BclI TGATCA 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 87, 215
BfmI CTRYAG 2 cut(s) 160, 260
BisI GCNGC 2 cut(s) 53, 126
BlsI GCNGC 2 cut(s) 54, 127
Bme1390I CCNGG 1 cut(s) 109
BmeRI GACNNNNNGTC 1 cut(s) 33
BmeT110I CYCGRG 2 cut(s) 140, 218
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 118, 208
BseMII CTCAG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 64, 112
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 2 cut(s) 140, 218
BsmAI GTCTC 2 cut(s) 87, 215
BsmBI CGTCTC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 2 cut(s) 140, 218
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 10, 57
BspCNI CTCAG 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 10, 57
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 105, 264
BstDEI CTNAG 2 cut(s) 30, 48
BstF5I GGATG 2 cut(s) 118, 208
BstKTI GATC 2 cut(s) 13, 60
BstMAI GTCTC 2 cut(s) 87, 215
BstMBI GATC 2 cut(s) 10, 57
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 107
BstSFI CTRYAG 2 cut(s) 160, 260
BstV1I GCAGC 2 cut(s) 64, 112
BstV2I GAAGAC 1 cut(s) 29
BtsCI GGATG 2 cut(s) 118, 208
BtsIMutI CAGTG 1 cut(s) 45
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 14, 23
CviJI RGCY 5 cut(s) 125, 167, 183, 207, 229
CviKI_1 RGCY 5 cut(s) 125, 167, 183, 207, 229
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 2 cut(s) 30, 48
DpnI GATC 2 cut(s) 12, 59
DpnII GATC 2 cut(s) 10, 57
DriI GACNNNNNGTC 1 cut(s) 33
Eam1105I GACNNNNNGTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 2 cut(s) 140, 218
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 2 cut(s) 17, 26
FaiI YATR 4 cut(s) 15, 24, 249, 267
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 2 cut(s) 13, 22
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 53, 126
FokI GGATG 2 cut(s) 125, 215
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 53, 126
GluI GCNGC 2 cut(s) 53, 126
Hin1II CATG 2 cut(s) 17, 26
HphI GGTGA 2 cut(s) 130, 235
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 218, 220
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 105, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 30, 48
Hsp92II CATG 2 cut(s) 17, 26
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 2 cut(s) 10, 57
LpnPI CCDG 3 cut(s) 94, 98, 121
Lsp1109I GCAGC 2 cut(s) 64, 112
LweI GCATC 1 cut(s) 181
MaeIII GTNAC 3 cut(s) 16, 25, 241
MalI GATC 2 cut(s) 12, 59
MboI GATC 2 cut(s) 10, 57
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 231
MnlI CCTC 1 cut(s) 109
MslI CAYNNNNRTG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 10, 57
NlaIII CATG 2 cut(s) 17, 26
NmuCI GTSAC 3 cut(s) 16, 25, 241
OliI CACNNNNGTG 1 cut(s) 23
PaeR7I CTCGAG 1 cut(s) 218
PkrI GCNGC 2 cut(s) 54, 127
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 2 cut(s) 53, 126
Sau3AI GATC 2 cut(s) 10, 57
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 231
SetI ASST 7 cut(s) 79, 87, 120, 169, 185, 231, 248
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 2 cut(s) 160, 260
Sfr274I CTCGAG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 105, 264
TaqI TCGA 2 cut(s) 219, 272
TaqII GACCGA 1 cut(s) 239
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 3 cut(s) 16, 25, 241
TseI GCWGC 2 cut(s) 52, 125
Tsp45I GTSAC 3 cut(s) 16, 25, 241
TspDTI ATGAA 2 cut(s) 199, 249
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.