Rorug04G0257200

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000732
Physical Location & Seq
Reverse (-)
42973116 .. 42973992
877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0257200.1

Sequence Viewer

Length: 216 bp
ATGGCAGGCGAAGAAGTTCTTGTGCTGGCCACACCTACCTATGATTTTGGCAGGAGTTTAGCTTGCATGGAAGCCTCGGATGGCCGTCTCTCTGATCATTTTCTCACCTATTCCACCTTTGAAGAGTTGAGCAATGCCATATATCTTGAGAAGGCCAAGTATTGGGACACTTCAAAGCAAGTAGCACTACTTCTTATTGAGCTCAGCGATCTCTAA

Protein Analysis

71

Amino Acids

7.98

Weight (kDa)

4.3

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 162
AcoI YGGCCR 2 cut(s) 27, 82
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 2 cut(s) 122, 174
AluBI AGCT 2 cut(s) 62, 202
AluI AGCT 2 cut(s) 62, 202
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 92
AoxI GGCC 3 cut(s) 27, 82, 153
Asp700I GAANNNNTTC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 97
BalI TGGCCA 1 cut(s) 29
BanII GRGCYC 1 cut(s) 204
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 69
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 92
BlpI GCTNAGC 1 cut(s) 203
Bpu1102I GCTNAGC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 139
BshFI GGCC 3 cut(s) 29, 84, 155
BsiHKAI GWGCWC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 3 cut(s) 29, 84, 155
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 2 cut(s) 94, 208
Bsp1720I GCTNAGC 1 cut(s) 203
BspANI GGCC 3 cut(s) 29, 84, 155
BspCNI CTCAG 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 94, 208
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 7, 27, 64
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 2 cut(s) 97, 211
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 94, 208
BsuRI GGCC 3 cut(s) 29, 84, 155
BtsCI GGATG 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 7, 27, 64
CviAII CATG 1 cut(s) 67
CviJI RGCY 6 cut(s) 29, 62, 74, 84, 155, 202
CviKI_1 RGCY 6 cut(s) 29, 62, 74, 84, 155, 202
DdeI CTNAG 1 cut(s) 203
DpnI GATC 2 cut(s) 96, 210
DpnII GATC 2 cut(s) 94, 208
EaeI YGGCCR 2 cut(s) 27, 82
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 1 cut(s) 70
FaiI YATR 4 cut(s) 42, 68, 140, 142
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 1 cut(s) 179
FatI CATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 94
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 204
HaeIII GGCC 3 cut(s) 29, 84, 155
Hin1II CATG 1 cut(s) 70
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 79, 94
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 94, 208
LpnPI CCDG 2 cut(s) 11, 37
MalI GATC 2 cut(s) 96, 210
MboI GATC 2 cut(s) 94, 208
MboII GAAGA 2 cut(s) 23, 134
MhlI GDGCHC 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
MnlI CCTC 1 cut(s) 85
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 15
MscI TGGCCA 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 29
NdeII GATC 2 cut(s) 94, 208
NlaIII CATG 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 15
PflMI CCANNNNNTGG 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 204
SacI GAGCTC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 94, 208
SduI GDGCHC 1 cut(s) 204
SetI ASST 6 cut(s) 37, 41, 64, 110, 119, 204
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SstI GAGCTC 1 cut(s) 204
Van91I CCANNNNNTGG 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.