Rh7AG394700

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000732
Physical Location & Seq
Reverse (-)
51717040 .. 51717342
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG394700.1

Sequence Viewer

Length: 303 bp
ATGCCTCCTCAAGAAAAAAAGGTGGGAAGTACAAATGGTGATGGGTATAAACATCCTGATGTTTCGTACACTGAGCAGCAGATCATAACTATTTTCAAGAGCGTTGACCTGAACGGAGACGGCAAGCTGTCCTGGCATGAGGTGAAGGCTGCGTTCGCTAAACTCGGGGCGTTTTGTCCTGACTACAGAGCTTGGCGAGGACAAAGGCGTGCCGATGCCGACAAGGATGGCTTCATCTCTCTTGAGACCGAGCTCGATGAACTTGTCACCTATACCCTAAAACAAGGGTATAAACCAAAGTAA

Protein Analysis

100

Amino Acids

11.3

Weight (kDa)

6.72

Isoelectric Point (pI)

14.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 31, 68
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 3 cut(s) 127, 191, 253
AluI AGCT 3 cut(s) 127, 191, 253
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 111, 239
Ama87I CYCGRG 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 76, 149
AsuHPI GGTGA 3 cut(s) 50, 154, 259
AvaI CYCGRG 1 cut(s) 164
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 88, 136
BccI CCATC 2 cut(s) 35, 221
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 111, 239
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 2 cut(s) 77, 150
BlsI GCNGC 2 cut(s) 78, 151
Bme1390I CCNGG 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 239
BseBI CCWGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 52, 232
BseMII CTCAG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 88, 136
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 111, 239
BsmBI CGTCTC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 239
BssMI GATC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 125, 210
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 52, 232
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 2 cut(s) 111, 239
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 133, 155
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 88, 136
BtsCI GGATG 2 cut(s) 52, 232
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 125, 210
Csp6I GTAC 2 cut(s) 30, 67
CviAII CATG 1 cut(s) 137
CviJI RGCY 5 cut(s) 127, 149, 191, 231, 253
CviKI_1 RGCY 5 cut(s) 127, 149, 191, 231, 253
CviQI GTAC 2 cut(s) 30, 67
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 1 cut(s) 140
FaiI YATR 5 cut(s) 48, 86, 138, 273, 291
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 77, 150
FokI GGATG 2 cut(s) 39, 239
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 2 cut(s) 77, 150
GluI GCNGC 2 cut(s) 77, 150
Hin1II CATG 1 cut(s) 140
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HphI GGTGA 3 cut(s) 50, 154, 259
Hpy166II GTNNAC 2 cut(s) 69, 106
Hpy188III TCNNGA 5 cut(s) 11, 56, 97, 179, 242
Hpy8I GTNNAC 2 cut(s) 69, 106
HpyAV CCTTC 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 155
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 5 cut(s) 69, 118, 122, 145, 192
Lsp1109I GCAGC 2 cut(s) 88, 136
LweI GCATC 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 255
MnlI CCTC 4 cut(s) 15, 18, 133, 191
MslI CAYNNNNRTG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 133, 155
NdeII GATC 1 cut(s) 81
NlaIII CATG 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 265
PkrI GCNGC 2 cut(s) 78, 151
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
RsaI GTAC 2 cut(s) 31, 68
RsaNI GTAC 2 cut(s) 30, 67
RseI CAYNNNNRTG 1 cut(s) 57
SacI GAGCTC 1 cut(s) 255
SatI GCNGC 2 cut(s) 77, 150
Sau3AI GATC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 255
SetI ASST 7 cut(s) 24, 111, 129, 144, 193, 255, 272
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 9, 242
SmoI CTYRAG 2 cut(s) 9, 242
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 131
TaqI TCGA 1 cut(s) 255
TaqII GACCGA 1 cut(s) 263
TatI WGTACW 1 cut(s) 29
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 76, 149
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 223, 273
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.