Rh2AG314100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000732
Physical Location & Seq
Forward (+)
40381446 .. 40381804
359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG314100.1

Sequence Viewer

Length: 303 bp
ATGCATTCACAAATTCCATGTGGGTTGAGCTGCCAAAGGATTTGCTCTGGAAGATACTTGGGTCAGCTTTGGCTGACCATAACCACCAAGTGGGAGACAAGTGTCCCCCTAAGCCAATTAAGCCTTCTACACGCGCTCGATCCCGTCGGTGGCGCTGTACTTCATGACGGGGATGGAGGTGGAGGAAGCAAGCATAGTACTGCTGCGAAGCAGGGTAGTACCCCGAAGGAGGATTTGTCGTTGCCGGAGACGTGCCGTTACCGGAGACAAGTAAGGAGATATCTCGATCTGCGGTGTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.97

Weight (kDa)

8.97

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 292
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 90
AfaI GTAC 4 cut(s) 159, 199, 220, 298
AfiI CCNNNNNNNGG 3 cut(s) 90, 149, 229
AjiI CACGTC 1 cut(s) 252
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 2 cut(s) 30, 67
AluI AGCT 2 cut(s) 30, 67
Alw26I GTCTC 3 cut(s) 89, 242, 259
AlwI GGATC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 30, 203
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 2 cut(s) 136, 155
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BbvI GCAGC 2 cut(s) 17, 190
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 240
BcoDI GTCTC 3 cut(s) 89, 242, 259
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 2 cut(s) 31, 204
BlsI GCNGC 2 cut(s) 32, 205
BmcAI AGTACT 1 cut(s) 199
BmgBI CACGTC 1 cut(s) 252
BoxI GACNNNNGTC 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 149, 229
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 3 cut(s) 90, 149, 229
BseXI GCAGC 2 cut(s) 17, 190
Bsh1236I CGCG 1 cut(s) 134
BsiSI CCGG 2 cut(s) 245, 262
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 3 cut(s) 90, 149, 229
BsmAI GTCTC 3 cut(s) 89, 242, 259
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 4
Bsp143I GATC 2 cut(s) 139, 286
BspACI CCGC 1 cut(s) 292
BspFNI CGCG 1 cut(s) 134
BspHI TCATGA 1 cut(s) 163
BspPI GGATC 1 cut(s) 134
BssMI GATC 2 cut(s) 139, 286
BstBAI YACGTR 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 2 cut(s) 136, 155
BstKTI GATC 2 cut(s) 142, 289
BstMAI GTCTC 3 cut(s) 89, 242, 259
BstMBI GATC 2 cut(s) 139, 286
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstPAI GACNNNNGTC 1 cut(s) 101
BstSNI TACGTA 1 cut(s) 300
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 17, 190
BtrI CACGTC 1 cut(s) 252
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 191
CciI TCATGA 1 cut(s) 163
CfoI GCGC 2 cut(s) 136, 155
Csp6I GTAC 4 cut(s) 158, 198, 219, 297
CviAII CATG 2 cut(s) 18, 164
CviJI RGCY 5 cut(s) 30, 67, 73, 114, 123
CviKI_1 RGCY 5 cut(s) 30, 67, 73, 114, 123
CviQI GTAC 4 cut(s) 158, 198, 219, 297
DdeI CTNAG 1 cut(s) 110
DpnI GATC 2 cut(s) 141, 288
DpnII GATC 2 cut(s) 139, 286
DraIII CACNNNGTG 1 cut(s) 90
Eco105I TACGTA 1 cut(s) 300
Eco32I GATATC 1 cut(s) 281
EcoRV GATATC 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 2 cut(s) 21, 167
FaiI YATR 4 cut(s) 19, 80, 165, 195
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 17, 163
Fnu4HI GCNGC 2 cut(s) 31, 204
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 31, 204
GlaI GCGC 2 cut(s) 135, 154
GluI GCNGC 2 cut(s) 31, 204
HaeII RGCGCY 1 cut(s) 156
HapII CCGG 2 cut(s) 245, 262
HhaI GCGC 2 cut(s) 136, 155
Hin1II CATG 2 cut(s) 21, 167
Hin6I GCGC 2 cut(s) 134, 153
HinP1I GCGC 2 cut(s) 134, 153
HpaII CCGG 2 cut(s) 245, 262
Hpy166II GTNNAC 1 cut(s) 297
Hpy188III TCNNGA 3 cut(s) 48, 164, 284
Hpy8I GTNNAC 1 cut(s) 297
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 134, 220
HpyCH4IV ACGT 2 cut(s) 251, 299
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 2 cut(s) 251, 299
Hsp92II CATG 2 cut(s) 21, 167
HspAI GCGC 2 cut(s) 134, 153
Kzo9I GATC 2 cut(s) 139, 286
LpnPI CCDG 4 cut(s) 33, 197, 258, 275
Lsp1109I GCAGC 2 cut(s) 17, 190
MaeII ACGT 2 cut(s) 251, 299
MaeIII GTNAC 1 cut(s) 257
MalI GATC 2 cut(s) 141, 288
MboI GATC 2 cut(s) 139, 286
MboII GAAGA 1 cut(s) 63
MluCI AATT 2 cut(s) 12, 116
MnlI CCTC 3 cut(s) 170, 176, 223
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 119
MspI CCGG 2 cut(s) 245, 262
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 2 cut(s) 139, 286
NlaIII CATG 2 cut(s) 21, 167
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 163
PctI GAATGC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 2 cut(s) 32, 205
Ppu21I YACGTR 1 cut(s) 300
PshAI GACNNNNGTC 1 cut(s) 101
RsaI GTAC 4 cut(s) 159, 199, 220, 298
RsaNI GTAC 4 cut(s) 158, 198, 219, 297
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 2 cut(s) 31, 204
Sau3AI GATC 2 cut(s) 139, 286
ScaI AGTACT 1 cut(s) 199
SetI ASST 5 cut(s) 32, 69, 181, 254, 302
SnaBI TACGTA 1 cut(s) 300
Sse9I AATT 2 cut(s) 12, 116
SsiI CCGC 1 cut(s) 292
TaiI ACGT 2 cut(s) 254, 302
TaqI TCGA 2 cut(s) 138, 285
TasI AATT 2 cut(s) 12, 116
TatI WGTACW 2 cut(s) 157, 197
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseI GCWGC 2 cut(s) 30, 203
TspDTI ATGAA 1 cut(s) 152
Van91I CCANNNNNTGG 1 cut(s) 90
XapI RAATTY 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 199
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.