Rroxscaffold_1G00006670

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000732
Physical Location & Seq
Reverse (-)
8715896 .. 8716625
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006670.1

Sequence Viewer

Length: 297 bp
ATGGATCCTGATGTTTCGCACGCTGGGGAGCAAATCAGAAGTTTTTTACGAGGTGGCCCCAGTCATCTGGAGAAAGGACAAATCCGCGATGTTTCCGAAAGCTTTGATAGGAACGGTGGCGGAGAACTCTCCAAGGATGAGCTCAAGGCAGCCTTTCGGAAACTAGGATCGCGTTGGAGCTCTTACAGAGATAGGAGAGCAGCACAACATGTAGATGCCAACGGCGACGGCATCATCTCTAACGAGGAACTCAACAACCTTATCAACTATGCCCTAGAACGAGGTTATAAGCCATAA

Protein Analysis

98

Amino Acids

10.96

Weight (kDa)

6.28

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AccII CGCG 2 cut(s) 87, 172
AciI CCGC 2 cut(s) 85, 120
AclWI GGATC 2 cut(s) 12, 175
AflIII ACRYGT 1 cut(s) 208
AluBI AGCT 3 cut(s) 102, 142, 180
AluI AGCT 3 cut(s) 102, 142, 180
Alw21I GWGCWC 2 cut(s) 144, 182
AlwI GGATC 2 cut(s) 12, 175
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 149, 200
AspS9I GGNCC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 144, 182
Bbv12I GWGCWC 2 cut(s) 144, 182
BbvI GCAGC 2 cut(s) 161, 212
BceAI ACGGC 2 cut(s) 238, 244
BfaI CTAG 2 cut(s) 164, 275
BisI GCNGC 2 cut(s) 150, 201
BlsI GCNGC 2 cut(s) 151, 202
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 6, 58
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 2 cut(s) 205, 240
BmuI ACTGGG 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 161, 212
BseYI CCCAGC 1 cut(s) 23
Bsh1236I CGCG 2 cut(s) 87, 172
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 144, 182
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 144, 182
Bsp143I GATC 2 cut(s) 4, 167
BspACI CCGC 2 cut(s) 85, 120
BspANI GGCC 1 cut(s) 57
BspFNI CGCG 2 cut(s) 87, 172
BspLI GGNNCC 2 cut(s) 6, 58
BspPI GGATC 2 cut(s) 12, 175
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 4, 167
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 21
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 2 cut(s) 87, 172
BstKTI GATC 2 cut(s) 7, 170
BstMBI GATC 2 cut(s) 4, 167
BstNSI RCATGY 1 cut(s) 212
BstUI CGCG 2 cut(s) 87, 172
BstV1I GCAGC 2 cut(s) 161, 212
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 56
CviAII CATG 1 cut(s) 209
CviJI RGCY 6 cut(s) 57, 102, 142, 152, 180, 292
CviKI_1 RGCY 6 cut(s) 57, 102, 142, 152, 180, 292
DpnI GATC 2 cut(s) 6, 169
DpnII GATC 2 cut(s) 4, 167
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 2 cut(s) 142, 180
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 2 cut(s) 144, 182
Eco53kI GAGCTC 2 cut(s) 142, 180
EcoICRI GAGCTC 2 cut(s) 142, 180
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 2 cut(s) 144, 182
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 212
FaiI YATR 4 cut(s) 210, 270, 288, 295
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 150, 201
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 2 cut(s) 144, 182
Fsp4HI GCNGC 2 cut(s) 150, 201
FspBI CTAG 2 cut(s) 164, 275
GluI GCNGC 2 cut(s) 150, 201
GsaI CCCAGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 38, 97, 159
Hpy188III TCNNGA 2 cut(s) 8, 68
Hpy99I CGWCG 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 116
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 2 cut(s) 4, 167
LmnI GCTCC 2 cut(s) 28, 177
LpnPI CCDG 4 cut(s) 9, 21, 53, 73
Lsp1109I GCAGC 2 cut(s) 161, 212
LweI GCATC 2 cut(s) 205, 240
MaeI CTAG 2 cut(s) 164, 275
MalI GATC 2 cut(s) 6, 169
MboI GATC 2 cut(s) 4, 167
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 144, 182
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 3 cut(s) 44, 238, 275
MslI CAYNNNNRTG 1 cut(s) 213
MvnI CGCG 2 cut(s) 87, 172
NdeII GATC 2 cut(s) 4, 167
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 6, 58
NspI RCATGY 1 cut(s) 212
PciI ACATGT 1 cut(s) 208
PkrI GCNGC 2 cut(s) 151, 202
PscI ACATGT 1 cut(s) 208
PsiI TTATAA 1 cut(s) 288
Psp124BI GAGCTC 2 cut(s) 144, 182
PspFI CCCAGC 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 6, 58
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 2 cut(s) 144, 182
SatI GCNGC 2 cut(s) 150, 201
Sau3AI GATC 2 cut(s) 4, 167
Sau96I GGNCC 1 cut(s) 56
SduI GDGCHC 2 cut(s) 144, 182
SetI ASST 6 cut(s) 55, 104, 144, 182, 261, 286
SfaNI GCATC 2 cut(s) 205, 240
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SsiI CCGC 2 cut(s) 85, 120
SspMI CTAG 2 cut(s) 164, 275
SstI GAGCTC 2 cut(s) 144, 182
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 116
TseI GCWGC 2 cut(s) 149, 200
XceI RCATGY 1 cut(s) 212
XspI CTAG 2 cut(s) 164, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.