Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000732

Physical Location & Seq

Genomic Coordinates Forward (+)

37259856 .. 37260523

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G437200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTTTTCGATACAAATTATAAGGTCCCGAACAACGTTCCCTACACCGAGCAGCAGATAATGAATGTCTTCAAAAGTCATGACAAGAATGGAGATGCTCAACTTTCCAAAGAGGAGCTGAAAGAAGCCTTCAAAGAACTTGGCTCGAAATGTCCTCCTTTAAGAGCTTGGTTTGCTAAAAATTATGCAGATGACAACCGCGATGGCTTCATTTCTATAGACAAGGAGCTCAGCAAGCTCGTCAAGTATGTCCTAAAATTGAACTATACACTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

93

Amino Acids

10.73

Weight (kDa)

7.81

Isoelectric Point (pI)

16.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000732)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica	Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis	pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis	RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata	RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora	Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa	Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha	Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana	Rw0G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccII	CGCG	1 cut(s)	201
AciI	CCGC	1 cut(s)	199
AclI	AACGTT	1 cut(s)	36
AgsI	TTSAA	3 cut(s)	73, 133, 262
AluBI	AGCT	4 cut(s)	118, 167, 229, 238
AluI	AGCT	4 cut(s)	118, 167, 229, 238
Alw21I	GWGCWC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	230
BstFNI	CGCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 235
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	236
CciI	TCATGA	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	25
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	7 cut(s)	118, 128, 144, 167, 207, 229, 238
CviKI_1	RGCY	7 cut(s)	118, 128, 144, 167, 207, 229, 238
DdeI	CTNAG	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	1 cut(s)	83
FaiI	YATR	6 cut(s)	21, 81, 186, 218, 249, 267
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	28, 80
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 235
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	115, 226
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	85
MaeII	ACGT	1 cut(s)	36
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	3 cut(s)	16, 181, 257
MnlI	CCTC	2 cut(s)	106, 165
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	161, 277
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	173, 235
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	27
PagI	TCATGA	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	54
PpuMI	RGGWCCY	1 cut(s)	25
PsiI	TTATAA	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	25
PspPPI	RGGWCCY	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	161, 277
SatI	GCNGC	1 cut(s)	53
Sau96I	GGNCC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	6 cut(s)	27, 39, 120, 169, 231, 240
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	3 cut(s)	16, 181, 257
SsiI	CCGC	1 cut(s)	199
SstI	GAGCTC	1 cut(s)	231
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	9, 146
TasI	AATT	3 cut(s)	16, 181, 257
Tru1I	TTAA	2 cut(s)	161, 277
Tru9I	TTAA	2 cut(s)	161, 277
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	3 cut(s)	77, 199, 263
VpaK11BI	GGWCC	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.