Prupe.1G437100_v2.0.a1

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000732
Physical Location & Seq
Forward (+)
37256569 .. 37257240
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G437100.1

Sequence Viewer

Length: 282 bp
ATGGTTTGGGAAACAAATAGGTATAAGGCCCCGAGCAAGGTTCCCTACGCAAAGGAGCAGATAAGGGACGTCTTCAAACGTCATGACAAGAATGGAGATGGTCAACTTTCCAAAGAAGAGCTGGACGCAGCCTTTGACGAACTTGGCGCGAAATGGCCTCCTTTTAGAGCTTGGTTTGCTCGACAGTATGCAGATGACAACGGCGATGGCTTCATTTCTATAGACAAGGAGCTCAGCAAGCTCGTCCAGTATGCCCTAGAATTGAAGTATATACTTCATTAA

Protein Analysis

94

Amino Acids

10.91

Weight (kDa)

6.09

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
AccII CGCG 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 2 cut(s) 76, 265
AluBI AGCT 4 cut(s) 121, 170, 232, 241
AluI AGCT 4 cut(s) 121, 170, 232, 241
Alw21I GWGCWC 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 2 cut(s) 27, 155
ApeKI GCWGC 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 31
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 92, 200
BceAI ACGGC 1 cut(s) 217
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 1 cut(s) 129
BlpI GCTNAGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 30, 42
BpiI GAAGAC 1 cut(s) 64
Bpu1102I GCTNAGC 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 29, 157
BsiHKAI GWGCWC 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 31
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 29, 157
BsoBI CYCGRG 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 234
Bsp1720I GCTNAGC 1 cut(s) 233
BspANI GGCC 2 cut(s) 29, 157
BspCNI CTCAG 1 cut(s) 246
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 30, 42
BspQI GCTCTTC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 176, 238
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 64
BsuRI GGCC 2 cut(s) 29, 157
BtgZI GCGATG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 239
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 28
CseI GACGC 1 cut(s) 134
CviAII CATG 1 cut(s) 83
CviJI RGCY 8 cut(s) 29, 121, 131, 157, 170, 210, 232, 241
CviKI_1 RGCY 8 cut(s) 29, 121, 131, 157, 170, 210, 232, 241
DdeI CTNAG 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 232
Eco88I CYCGRG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 1 cut(s) 86
FaiI YATR 7 cut(s) 24, 84, 189, 221, 252, 270, 272
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 2 cut(s) 29, 157
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 2 cut(s) 69, 79
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 238
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 69, 79
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 1 cut(s) 147
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 55, 229
LpnPI CCDG 2 cut(s) 107, 260
Lsp1109I GCAGC 1 cut(s) 140
MaeI CTAG 1 cut(s) 257
MaeII ACGT 2 cut(s) 69, 79
MboII GAAGA 2 cut(s) 64, 128
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 260
MnlI CCTC 1 cut(s) 168
MseI TTAA 1 cut(s) 280
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 176, 238
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 2 cut(s) 30, 42
PagI TCATGA 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 30, 42
PspPI GGNCC 1 cut(s) 28
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 280
SatI GCNGC 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 234
SetI ASST 8 cut(s) 23, 42, 72, 82, 123, 172, 234, 243
SfcI CTRYAG 1 cut(s) 219
Sse9I AATT 1 cut(s) 260
SspMI CTAG 1 cut(s) 257
SstI GAGCTC 1 cut(s) 234
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 2 cut(s) 72, 82
TaqI TCGA 1 cut(s) 181
TasI AATT 1 cut(s) 260
Tru1I TTAA 1 cut(s) 280
Tru9I TTAA 1 cut(s) 280
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 202, 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 1 cut(s) 257
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.