Prupe.1G436400_v2.0.a1

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000732
Physical Location & Seq
Forward (+)
37223821 .. 37224342
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G436400.1

Sequence Viewer

Length: 297 bp
ATGATTAGGGGCATGGTTCCTCAGGTTTCCATTAGGGAAGAGGTTAAGTTTAAGGAGGCTCATGTTCCATGGCGCAGGGAGATGGTGGTGGAAGTGTTCAAAAGTTTTGCCAAGGACGGGCAGCTTTCCAAGCATGAGTTGAAGGCAGCCTTCGATAAACTTGGGTCGCGTTGGAGCACTTTCAGAGCTTGGAGAGCTTTAAGCTATGCAGATGCCAATCAGGACGGCCTCATTTCTAATGATCACGAGTTCAAAGCCCTTGTCAACTATGCCTTAGAATGTGGCTATGAACTCTAA

Protein Analysis

99

Amino Acids

11.38

Weight (kDa)

7.89

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 3 cut(s) 100, 142, 253
AluBI AGCT 4 cut(s) 124, 188, 197, 204
AluI AGCT 4 cut(s) 124, 188, 197, 204
Alw21I GWGCWC 1 cut(s) 179
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 121, 146
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
AspLEI GCGC 1 cut(s) 75
AxyI CCTNAGG 1 cut(s) 21
BauI CACGAG 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 133, 158
BccI CCATC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 241
BclI TGATCA 1 cut(s) 241
BisI GCNGC 2 cut(s) 122, 147
BlsI GCNGC 2 cut(s) 123, 148
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 68, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse21I CCTNAGG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 68, 111
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 133, 158
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 117
BsnI GGCC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 241
Bsp19I CCATGG 1 cut(s) 68
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 68, 111
BssMI GATC 1 cut(s) 241
BssSI CACGAG 1 cut(s) 245
BssT1I CCWWGG 2 cut(s) 68, 111
Bst2BI CACGAG 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 21, 274
BstDSI CCRYGG 1 cut(s) 68
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 130, 194
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 133, 158
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 68
CfoI GCGC 1 cut(s) 75
CviAII CATG 4 cut(s) 13, 62, 69, 134
CviJI RGCY 9 cut(s) 59, 124, 149, 188, 197, 204, 228, 257, 285
CviKI_1 RGCY 9 cut(s) 59, 124, 149, 188, 197, 204, 228, 257, 285
DdeI CTNAG 2 cut(s) 21, 274
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 68, 111
Eco81I CCTNAGG 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 68, 111
ErhI CCWWGG 2 cut(s) 68, 111
FaeI CATG 4 cut(s) 16, 65, 72, 137
FaiI YATR 7 cut(s) 14, 63, 70, 135, 207, 270, 288
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 4 cut(s) 12, 61, 68, 133
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 122, 147
Fsp4HI GCNGC 2 cut(s) 122, 147
GlaI GCGC 1 cut(s) 74
GluI GCNGC 2 cut(s) 122, 147
HaeIII GGCC 1 cut(s) 228
HhaI GCGC 1 cut(s) 75
Hin1II CATG 4 cut(s) 16, 65, 72, 137
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 2 cut(s) 221, 245
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 136, 160
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 194
HpyF3I CTNAG 2 cut(s) 21, 274
Hsp92II CATG 4 cut(s) 16, 65, 72, 137
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 3 cut(s) 8, 61, 206
Lsp1109I GCAGC 2 cut(s) 133, 158
LweI GCATC 1 cut(s) 202
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 4 cut(s) 30, 34, 49, 239
MseI TTAA 3 cut(s) 45, 51, 200
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 130, 194
NcoI CCATGG 1 cut(s) 68
NdeII GATC 1 cut(s) 241
NlaIII CATG 4 cut(s) 16, 65, 72, 137
NlaIV GGNNCC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 123, 148
PspN4I GGNNCC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 45, 51, 200
SatI GCNGC 2 cut(s) 122, 147
Sau3AI GATC 1 cut(s) 241
SduI GDGCHC 1 cut(s) 179
SetI ASST 6 cut(s) 27, 45, 126, 190, 199, 206
SfaNI GCATC 1 cut(s) 202
StyI CCWWGG 2 cut(s) 68, 111
TaqI TCGA 1 cut(s) 153
Tru1I TTAA 3 cut(s) 45, 51, 200
Tru9I TTAA 3 cut(s) 45, 51, 200
TseI GCWGC 2 cut(s) 121, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.