Prupe.1G437000_v2.0.a1

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000732
Physical Location & Seq
Forward (+)
37250441 .. 37251120
680 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G437000.1

Sequence Viewer

Length: 291 bp
ATGGGTTATCACAATAATCTTGATAAGGTCCGTAATAAGAGGGCCAAGTTTCCCTACACAAAGGAGCAGATAAGGAACGTCTTCAAACGTCATGACAAGAATGGAGATGGTCAACTTTCCAAAGATGAGCTGGACGCAGCCTTCAAAGAACTTGGCTCGATATGGCCTCCTGGTAGAGCTTGGTTTGCTCAAAGGTATGCAGATGACGACGGCGATGGCTTCATTTCTATAGACAAGGAGCTCAGCAAGCTCGTCCAGTATGCCCTAGAATTGAAGTATACACTTAAGTAA

Protein Analysis

97

Amino Acids

11.21

Weight (kDa)

9.13

Isoelectric Point (pI)

22.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 278
AflII CTTAAG 1 cut(s) 284
AgsI TTSAA 3 cut(s) 85, 145, 274
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 4 cut(s) 130, 179, 241, 250
AluI AGCT 4 cut(s) 130, 179, 241, 250
Alw21I GWGCWC 1 cut(s) 243
AoxI GGCC 2 cut(s) 42, 164
ApeKI GCWGC 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 28, 42
AvaII GGWCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 101, 209
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 171
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 228
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 138
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 28, 42
BmrFI CCNGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 73
Bpu1102I GCTNAGC 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 256
BseXI GCAGC 1 cut(s) 149
BshFI GGCC 2 cut(s) 44, 166
BsiHKAI GWGCWC 1 cut(s) 243
BsnI GGCC 2 cut(s) 44, 166
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1720I GCTNAGC 1 cut(s) 242
BspANI GGCC 2 cut(s) 44, 166
BspCNI CTCAG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 284
BsrI ACTGG 1 cut(s) 256
BssNAI GTATAC 1 cut(s) 279
Bst1107I GTATAC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 171
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 185, 247
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 279
BsuRI GGCC 2 cut(s) 44, 166
BtgZI GCGATG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 248
CciI TCATGA 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 28, 42
CseI GACGC 1 cut(s) 143
CviAII CATG 1 cut(s) 92
CviJI RGCY 9 cut(s) 44, 130, 140, 156, 166, 179, 219, 241, 250
CviKI_1 RGCY 9 cut(s) 44, 130, 140, 156, 166, 179, 219, 241, 250
DdeI CTNAG 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 1 cut(s) 95
FaiI YATR 6 cut(s) 93, 163, 198, 230, 261, 279
FatI CATG 1 cut(s) 91
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 266
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 2 cut(s) 44, 166
HgaI GACGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 95
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 113, 279
Hpy188III TCNNGA 2 cut(s) 20, 92
Hpy8I GTNNAC 2 cut(s) 113, 279
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 2 cut(s) 78, 88
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 247
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 78, 88
Hsp92II CATG 1 cut(s) 95
LmnI GCTCC 2 cut(s) 64, 238
LpnPI CCDG 4 cut(s) 116, 156, 183, 269
Lsp1109I GCAGC 1 cut(s) 149
MaeI CTAG 1 cut(s) 266
MaeII ACGT 2 cut(s) 78, 88
MboII GAAGA 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 1 cut(s) 269
MnlI CCTC 2 cut(s) 33, 177
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 185, 247
NlaIII CATG 1 cut(s) 95
PagI TCATGA 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 80
PkrI GCNGC 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 2 cut(s) 28, 42
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 28, 42
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 243
SetI ASST 8 cut(s) 30, 81, 91, 132, 181, 197, 243, 252
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 269
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 169
TaiI ACGT 2 cut(s) 81, 91
TaqI TCGA 1 cut(s) 158
TasI AATT 1 cut(s) 269
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 211
TspGWI ACGGA 1 cut(s) 20
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.