Rh7AG392700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000732
Physical Location & Seq
Forward (+)
51485529 .. 51488130
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG392700.1

Sequence Viewer

Length: 1053 bp
ATGCCTCGGCAAGGAATAAAGTTGGAAAAAGCAAATGGTGGTGGGTATAAAGATCCTGATGTTCCGTACACTGAGCAGCAGATCATAAATATTTTCAAGAGCTTTGACCTGAACGGAGACGGCAAGCTGTCCTGGGATGAGGTGAAGGCTGCGTTCGCTAAACTCGGGGCGTTTTGTCCTGACTACAGAGCTTGGCGAGGACAAAGGCGTGCCGATGCCGACAAGGATGGCTTCGTCTCTCTTGAGACCGAGCTCGATGAACTTGTCACCTATGCCCTAAAACAAGGAGATGGGTCGTCGTCTATTTGCCGCAACTATCCTCACCTTCACCTTGTTCACCATCATCATCTTCCCTCCGAGGCCAAGGGAGAAGGCAAAGGGAACGGCTTACATGTTGGGTTTCACGCTTCGAGTTGCCCCAAGGTTGAGGACATTGTTGCTGAGGTTGTGGCCCGTGTGCATGAGCAAGATTCAAGCTCCCTCCTGCCCTCCTCCGCCTCTTTTTCACAGGGTTGTGATGCCTCGATCCTGTTGGACGCGACACCATCTGGTGAGCCTATAGAGAAAACATCACTAGCCAATAGTGAAACACAAAGAGGTCTTGAGGTTATTAATGAGATCAAGGTCCAGGTAGAGCAGGAGAGCTCCCAAACTGTTTCCTGCGCTGACATATTAGCATTTGCTGCTCGAGAAGCCATTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAACTGGTCGCCGTGACAGTAGGACTTCACGTACTTCATATGTCAATTTCAACCTCCCTACACCTGTAACGCCTCTAAAAGACATTACATACATGTTCGCGAGGAGAAATCTCACACTAGAAGATATGGTTGTTTCGTCCGGTGCACACTCCATTGGTGAAGCACAATGCACCCAATTGAAGACAGACTACAAATATAGCGAAGCTCAGCCCCGAGACCCTTCCCTGGACCCAACCTATGGTGATGAGCTAGGTGGAAAGTGCCCAGCACCAGACACATTCATTTCCTGCAGAGCAAGCATTACGTATAATGGTGGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

350

Amino Acids

38.18

Weight (kDa)

5.49

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 28 - 55 3e-06 EF hand domain
EF-hand_6 PF13405 28 - 56 2.7e-06 EF-hand domain
peroxidase PF00141 157 - 334 3.7e-44 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 968
AccII CGCG 2 cut(s) 539, 830
AciI CCGC 2 cut(s) 310, 495
AclWI GGATC 2 cut(s) 47, 520
AfaI GTAC 2 cut(s) 68, 763
AfiI CCNNNNNNNGG 3 cut(s) 11, 955, 968
AflIII ACRYGT 2 cut(s) 391, 822
AgsI TTSAA 4 cut(s) 97, 474, 781, 910
AjnI CCWGG 3 cut(s) 131, 627, 954
AluBI AGCT 8 cut(s) 102, 127, 191, 253, 477, 645, 935, 979
AluI AGCT 8 cut(s) 102, 127, 191, 253, 477, 645, 935, 979
Alw21I GWGCWC 3 cut(s) 255, 647, 877
Alw26I GTCTC 4 cut(s) 111, 239, 241, 939
Alw44I GTGCAC 1 cut(s) 873
AlwI GGATC 2 cut(s) 47, 520
Ama87I CYCGRG 3 cut(s) 164, 687, 942
AoxI GGCC 3 cut(s) 360, 450, 709
ApaLI GTGCAC 1 cut(s) 873
ApeKI GCWGC 3 cut(s) 76, 149, 683
AseI ATTAAT 1 cut(s) 612
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 3 cut(s) 451, 625, 958
AsuHPI GGTGA 8 cut(s) 154, 259, 314, 320, 329, 563, 899, 983
AvaI CYCGRG 3 cut(s) 164, 687, 942
AvaII GGWCC 2 cut(s) 625, 958
BaeGI GKGCMC 2 cut(s) 877, 995
BanII GRGCYC 2 cut(s) 255, 647
BarI GAAGNNNNNNTAC 2 cut(s) 902, 934
BbsI GAAGAC 1 cut(s) 917
Bbv12I GWGCWC 3 cut(s) 255, 647, 877
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 88, 136, 670
BccI CCATC 4 cut(s) 221, 284, 348, 553
BceAI ACGGC 3 cut(s) 136, 400, 726
BciT130I CCWGG 3 cut(s) 133, 629, 956
BcoDI GTCTC 4 cut(s) 111, 239, 241, 939
BfaI CTAG 4 cut(s) 575, 704, 848, 980
BfmI CTRYAG 3 cut(s) 184, 558, 1018
BisI GCNGC 4 cut(s) 77, 150, 310, 684
BlpI GCTNAGC 1 cut(s) 936
BlsI GCNGC 4 cut(s) 78, 151, 311, 685
Bme1390I CCNGG 3 cut(s) 133, 629, 956
Bme18I GGWCC 2 cut(s) 625, 958
BmeT110I CYCGRG 3 cut(s) 164, 687, 942
BmgT120I GGNCC 3 cut(s) 451, 625, 958
BmiI GGNNCC 1 cut(s) 960
BmrFI CCNGG 3 cut(s) 133, 629, 956
BmsI GCATC 2 cut(s) 205, 508
BpiI GAAGAC 1 cut(s) 917
Bpu10I CCTNAGC 1 cut(s) 441
Bpu1102I GCTNAGC 1 cut(s) 936
BpuEI CTTGAG 2 cut(s) 263, 623
BsaAI YACGTR 2 cut(s) 761, 1035
BsaI GGTCTC 2 cut(s) 239, 939
BsaJI CCNNGG 6 cut(s) 5, 132, 357, 363, 420, 954
BsaWI WCCGGW 1 cut(s) 869
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 955, 968
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 1 cut(s) 739
BseBI CCWGG 3 cut(s) 133, 629, 956
BseDI CCNNGG 6 cut(s) 5, 132, 357, 363, 420, 954
BseGI GGATG 2 cut(s) 142, 232
BseLI CCNNNNNNNGG 3 cut(s) 11, 955, 968
BseMII CTCAG 3 cut(s) 63, 432, 950
BseNI ACTGG 1 cut(s) 739
BseRI GAGGAG 2 cut(s) 481, 847
BseSI GKGCMC 2 cut(s) 877, 995
BseXI GCAGC 3 cut(s) 88, 136, 670
BseYI CCCAGC 1 cut(s) 994
Bsh1236I CGCG 2 cut(s) 539, 830
BshFI GGCC 3 cut(s) 362, 452, 711
BsiHKAI GWGCWC 3 cut(s) 255, 647, 877
BsiHKCI CYCGRG 3 cut(s) 164, 687, 942
BsiSI CCGG 2 cut(s) 708, 870
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 3 cut(s) 11, 955, 968
BsmAI GTCTC 4 cut(s) 111, 239, 241, 939
BsmBI CGTCTC 2 cut(s) 111, 241
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 3 cut(s) 362, 452, 711
Bso31I GGTCTC 2 cut(s) 239, 939
BsoBI CYCGRG 3 cut(s) 164, 687, 942
Bsp1286I GDGCHC 4 cut(s) 255, 647, 877, 995
Bsp143I GATC 4 cut(s) 52, 81, 525, 618
Bsp1720I GCTNAGC 1 cut(s) 936
Bsp68I TCGCGA 1 cut(s) 830
BspACI CCGC 2 cut(s) 310, 495
BspANI GGCC 3 cut(s) 362, 452, 711
BspCNI CTCAG 3 cut(s) 64, 433, 949
BspFNI CGCG 2 cut(s) 539, 830
BspLI GGNNCC 1 cut(s) 960
BspMAI CTGCAG 1 cut(s) 1022
BspPI GGATC 2 cut(s) 47, 520
BspTNI GGTCTC 2 cut(s) 239, 939
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 1 cut(s) 739
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 6 cut(s) 5, 132, 357, 363, 420, 954
BssMI GATC 4 cut(s) 52, 81, 525, 618
BssT1I CCWWGG 2 cut(s) 363, 420
Bst2UI CCWGG 3 cut(s) 133, 629, 956
Bst4CI ACNGT 2 cut(s) 655, 749
BstAPI GCANNNNNTGC 1 cut(s) 683
BstBAI YACGTR 2 cut(s) 761, 1035
BstC8I GCNNGC 4 cut(s) 125, 210, 709, 1027
BstDEI CTNAG 3 cut(s) 72, 441, 936
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 142, 232
BstFNI CGCG 2 cut(s) 539, 830
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 4 cut(s) 55, 84, 528, 621
BstMAI GTCTC 4 cut(s) 111, 239, 241, 939
BstMBI GATC 4 cut(s) 52, 81, 525, 618
BstMWI GCNNNNNNNGC 4 cut(s) 155, 683, 692, 1026
BstNI CCWGG 3 cut(s) 133, 629, 956
BstNSI RCATGY 2 cut(s) 395, 826
BstSCI CCNGG 3 cut(s) 131, 627, 954
BstSFI CTRYAG 3 cut(s) 184, 558, 1018
BstSLI GKGCMC 2 cut(s) 877, 995
BstSNI TACGTA 1 cut(s) 1035
BstUI CGCG 2 cut(s) 539, 830
BstV1I GCAGC 3 cut(s) 88, 136, 670
BstV2I GAAGAC 1 cut(s) 917
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 3 cut(s) 362, 452, 711
BtsCI GGATG 2 cut(s) 142, 232
BtsIMutI CAGTG 1 cut(s) 69
BtuMI TCGCGA 1 cut(s) 830
Cac8I GCNNGC 4 cut(s) 125, 210, 709, 1027
CfoI GCGC 1 cut(s) 665
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 3 cut(s) 451, 625, 958
CseI GACGC 1 cut(s) 545
Csp6I GTAC 2 cut(s) 67, 762
CviAII CATG 3 cut(s) 392, 461, 823
CviQI GTAC 2 cut(s) 67, 762
DdeI CTNAG 3 cut(s) 72, 441, 936
DpnI GATC 4 cut(s) 54, 83, 527, 620
DpnII GATC 4 cut(s) 52, 81, 525, 618
EciI GGCGGA 1 cut(s) 484
Ecl136II GAGCTC 2 cut(s) 253, 645
Eco105I TACGTA 1 cut(s) 1035
Eco130I CCWWGG 2 cut(s) 363, 420
Eco24I GRGCYC 2 cut(s) 255, 647
Eco31I GGTCTC 2 cut(s) 239, 939
Eco47I GGWCC 2 cut(s) 625, 958
Eco53kI GAGCTC 2 cut(s) 253, 645
Eco88I CYCGRG 3 cut(s) 164, 687, 942
EcoICRI GAGCTC 2 cut(s) 253, 645
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoRII CCWGG 3 cut(s) 131, 627, 954
EcoT14I CCWWGG 2 cut(s) 363, 420
EcoT38I GRGCYC 2 cut(s) 255, 647
ErhI CCWWGG 2 cut(s) 363, 420
Esp3I CGTCTC 2 cut(s) 111, 241
FaeI CATG 3 cut(s) 395, 464, 826
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 1 cut(s) 713
FatI CATG 3 cut(s) 391, 460, 822
FauNDI CATATG 1 cut(s) 769
Fnu4HI GCNGC 4 cut(s) 77, 150, 310, 684
FokI GGATG 2 cut(s) 149, 239
FriOI GRGCYC 2 cut(s) 255, 647
Fsp4HI GCNGC 4 cut(s) 77, 150, 310, 684
FspBI CTAG 4 cut(s) 575, 704, 848, 980
GlaI GCGC 1 cut(s) 664
GluI GCNGC 4 cut(s) 77, 150, 310, 684
GsaI CCCAGC 1 cut(s) 998
HaeIII GGCC 3 cut(s) 362, 452, 711
HapII CCGG 2 cut(s) 708, 870
HgaI GACGC 1 cut(s) 545
HhaI GCGC 1 cut(s) 665
Hin1II CATG 3 cut(s) 395, 464, 826
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HinfI GANTC 1 cut(s) 470
HpaII CCGG 2 cut(s) 708, 870
HphI GGTGA 8 cut(s) 154, 259, 314, 320, 329, 563, 899, 983
Hpy166II GTNNAC 4 cut(s) 69, 337, 875, 1046
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 7 cut(s) 56, 97, 179, 242, 602, 689, 829
Hpy8I GTNNAC 4 cut(s) 69, 337, 875, 1046
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 4 cut(s) 139, 335, 365, 960
HpyCH4III ACNGT 2 cut(s) 655, 749
HpyCH4IV ACGT 2 cut(s) 760, 1034
HpyCH4V TGCA 4 cut(s) 460, 875, 900, 1020
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 683, 692, 1026
HpyF3I CTNAG 3 cut(s) 72, 441, 936
HpySE526I ACGT 2 cut(s) 760, 1034
Hsp92II CATG 3 cut(s) 395, 464, 826
HspAI GCGC 1 cut(s) 663
KroI GCCGGC 1 cut(s) 707
KroNI GCCGGC 1 cut(s) 709
Kzo9I GATC 4 cut(s) 52, 81, 525, 618
LmnI GCTCC 2 cut(s) 482, 650
Lsp1109I GCAGC 3 cut(s) 88, 136, 670
LweI GCATC 2 cut(s) 205, 508
MaeI CTAG 4 cut(s) 575, 704, 848, 980
MaeII ACGT 2 cut(s) 760, 1034
MaeIII GTNAC 4 cut(s) 265, 719, 743, 796
MalI GATC 4 cut(s) 54, 83, 527, 620
MboI GATC 4 cut(s) 52, 81, 525, 618
MboII GAAGA 3 cut(s) 341, 863, 922
MfeI CAATTG 1 cut(s) 905
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 4 cut(s) 255, 647, 877, 995
MluCI AATT 2 cut(s) 775, 905
MmeI TCCRAC 1 cut(s) 513
MroNI GCCGGC 1 cut(s) 707
MseI TTAA 1 cut(s) 612
MspI CCGG 2 cut(s) 708, 870
MspR9I CCNGG 3 cut(s) 133, 629, 956
MunI CAATTG 1 cut(s) 905
MvaI CCWGG 3 cut(s) 133, 629, 956
MvnI CGCG 2 cut(s) 539, 830
MwoI GCNNNNNNNGC 4 cut(s) 155, 683, 692, 1026
NaeI GCCGGC 1 cut(s) 709
NdeI CATATG 1 cut(s) 769
NdeII GATC 4 cut(s) 52, 81, 525, 618
NgoMIV GCCGGC 1 cut(s) 707
NlaIII CATG 3 cut(s) 395, 464, 826
NlaIV GGNNCC 1 cut(s) 960
NmuCI GTSAC 3 cut(s) 265, 719, 743
NruI TCGCGA 1 cut(s) 830
NspI RCATGY 2 cut(s) 395, 826
PaeR7I CTCGAG 1 cut(s) 687
PciI ACATGT 2 cut(s) 391, 822
PdiI GCCGGC 1 cut(s) 709
PfeI GAWTC 1 cut(s) 470
PflMI CCANNNNNTGG 1 cut(s) 968
PkrI GCNGC 4 cut(s) 78, 151, 311, 685
Ppu21I YACGTR 2 cut(s) 761, 1035
PscI ACATGT 2 cut(s) 391, 822
PshBI ATTAAT 1 cut(s) 612
Psp124BI GAGCTC 2 cut(s) 255, 647
Psp6I CCWGG 3 cut(s) 131, 627, 954
PspFI CCCAGC 1 cut(s) 994
PspGI CCWGG 3 cut(s) 131, 627, 954
PspN4I GGNNCC 1 cut(s) 960
PspPI GGNCC 3 cut(s) 451, 625, 958
PstI CTGCAG 1 cut(s) 1022
PsuI RGATCY 1 cut(s) 52
RruI TCGCGA 1 cut(s) 830
RsaI GTAC 2 cut(s) 68, 763
RsaNI GTAC 2 cut(s) 67, 762
SacI GAGCTC 2 cut(s) 255, 647
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 4 cut(s) 77, 150, 310, 684
Sau3AI GATC 4 cut(s) 52, 81, 525, 618
Sau96I GGNCC 3 cut(s) 451, 625, 958
ScrFI CCNGG 3 cut(s) 133, 629, 956
SduI GDGCHC 4 cut(s) 255, 647, 877, 995
SfaNI GCATC 2 cut(s) 205, 508
SfcI CTRYAG 3 cut(s) 184, 558, 1018
Sfr274I CTCGAG 1 cut(s) 687
SinI GGWCC 2 cut(s) 625, 958
SlaI CTCGAG 1 cut(s) 687
SmlI CTYRAG 3 cut(s) 242, 602, 687
SmoI CTYRAG 3 cut(s) 242, 602, 687
SnaBI TACGTA 1 cut(s) 1035
Sse9I AATT 2 cut(s) 775, 905
SsiI CCGC 2 cut(s) 310, 495
SspI AATATT 1 cut(s) 91
SspMI CTAG 4 cut(s) 575, 704, 848, 980
SstI GAGCTC 2 cut(s) 255, 647
StyD4I CCNGG 3 cut(s) 131, 627, 954
StyI CCWWGG 2 cut(s) 363, 420
TaaI ACNGT 2 cut(s) 655, 749
TaiI ACGT 2 cut(s) 763, 1037
TaqI TCGA 4 cut(s) 255, 410, 524, 688
TaqII GACCGA 1 cut(s) 263
TasI AATT 2 cut(s) 775, 905
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 3 cut(s) 265, 719, 743
TseI GCWGC 3 cut(s) 76, 149, 683
Tsp45I GTSAC 3 cut(s) 265, 719, 743
TspDTI ATGAA 3 cut(s) 273, 756, 1000
TspGWI ACGGA 2 cut(s) 54, 129
TspRI CASTG 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 968
VneI GTGCAC 1 cut(s) 873
VpaK11BI GGWCC 2 cut(s) 625, 958
VspI ATTAAT 1 cut(s) 612
XagI CCTNNNNNAGG 1 cut(s) 9
XceI RCATGY 2 cut(s) 395, 826
XhoI CTCGAG 1 cut(s) 687
XspI CTAG 4 cut(s) 575, 704, 848, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.