Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001772.1

Orthogroup ID

OG0000732

Physical Location & Seq

Genomic Coordinates Reverse (-)

311562 .. 311864

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001772.1_g000067.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgcctaggcaaggaataaagttgggaaaagcaaatggtgatgggtataaagttcctgatgttccgtacactgagcagcagatcataaatattttcaagagctttgacctgaatggagacggcaagctgtcctgggatgaggtgaaggctgcgttcgctaaactcggggcgttttgtcctgactacagagcctggcgaggacaaaggcgtgccgatgccgacaaggatggcttcgtctctcttgagaccgagctcgatgaacttgtcacctatgccctaaaacaagggtataaaccaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

100

Amino Acids

11.26

Weight (kDa)

7.77

Isoelectric Point (pI)

21.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000732)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica	Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis	pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis	RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata	RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora	Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa	Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha	Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana	Rw0G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	131, 191
AluBI	AGCT	3 cut(s)	102, 127, 253
AluI	AGCT	3 cut(s)	102, 127, 253
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	3 cut(s)	111, 239, 241
AlwNI	CAGNNNCTG	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	76, 149
AspA2I	CCTAGG	1 cut(s)	5
AsuHPI	GGTGA	3 cut(s)	50, 154, 259
AvaI	CYCGRG	1 cut(s)	164
AvrII	CCTAGG	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	88, 136
BccI	CCATC	2 cut(s)	35, 221
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	133, 193
BcoDI	GTCTC	3 cut(s)	111, 239, 241
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	184
BisI	GCNGC	2 cut(s)	77, 150
BlnI	CCTAGG	1 cut(s)	5
BlsI	GCNGC	2 cut(s)	78, 151
Bme1390I	CCNGG	2 cut(s)	133, 193
BmeT110I	CYCGRG	1 cut(s)	164
BmrFI	CCNGG	2 cut(s)	133, 193
BmsI	GCATC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	5, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	133, 193
BseDI	CCNNGG	2 cut(s)	5, 132
BseGI	GGATG	2 cut(s)	142, 232
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	88, 136
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	3 cut(s)	111, 239, 241
BsmBI	CGTCTC	2 cut(s)	111, 241
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	5, 132
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	133, 193
BstC8I	GCNNGC	2 cut(s)	125, 210
BstDEI	CTNAG	1 cut(s)	72
BstENI	CCTNNNNNAGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	142, 232
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	3 cut(s)	111, 239, 241
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	2 cut(s)	133, 193
BstSCI	CCNGG	2 cut(s)	131, 191
BstSFI	CTRYAG	1 cut(s)	184
BstV1I	GCAGC	2 cut(s)	88, 136
BtsCI	GGATG	2 cut(s)	142, 232
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	125, 210
CaiI	CAGNNNCTG	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	67
CviJI	RGCY	6 cut(s)	102, 127, 149, 191, 231, 253
CviKI_1	RGCY	6 cut(s)	102, 127, 149, 191, 231, 253
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	239
Eco53kI	GAGCTC	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	253
EcoNI	CCTNNNNNAGG	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	131, 191
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	5
Esp3I	CGTCTC	2 cut(s)	111, 241
FaiI	YATR	4 cut(s)	48, 86, 273, 291
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
Fnu4HI	GCNGC	2 cut(s)	77, 150
FokI	GGATG	2 cut(s)	149, 239
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	77, 150
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	77, 150
HphI	GGTGA	3 cut(s)	50, 154, 259
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188III	TCNNGA	4 cut(s)	56, 97, 179, 242
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	81
LpnPI	CCDG	7 cut(s)	69, 118, 122, 145, 178, 192, 205
Lsp1109I	GCAGC	2 cut(s)	88, 136
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	133, 191
MspR9I	CCNGG	2 cut(s)	133, 193
MvaI	CCWGG	2 cut(s)	133, 193
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	78, 151
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	131, 191
PspGI	CCWGG	2 cut(s)	131, 191
PstNI	CAGNNNCTG	1 cut(s)	192
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	255
SatI	GCNGC	2 cut(s)	77, 150
Sau3AI	GATC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	133, 193
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	6 cut(s)	104, 111, 129, 144, 255, 272
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	131, 191
StyI	CCWWGG	1 cut(s)	5
TaqI	TCGA	1 cut(s)	255
TaqII	GACCGA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	76, 149
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	9
XmaJI	CCTAGG	1 cut(s)	5
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.