Prupe.1G436600_v2.0.a1

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000732
Physical Location & Seq
Forward (+)
37228911 .. 37229710
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G436600.1

Sequence Viewer

Length: 297 bp
ATGGTAAGAGATCTCCTTGTTCCGGGGTTTATTAATATCACAGAGCAGAAGGGCAGGGTCCAAATTTTCTGGTCTGAGGAGCAATTATTGGTTTTCTTCAAAGGTTATGACAAGGATGGAGATGGCAGACTTACCAAAGATGAGGCCAAGGCAGCCTTCGATAAACTTGGGTCGCGTTTCAGCACTTTCAGAACTTGGAGAGCACGATGCCATGCAGATACCAACAGCAAAGACAGGTCCATCCTCAACGTCAACGACCTTGTCAAATATGCCCTAAAACGTGGCTATAAACTCTGA

Protein Analysis

99

Amino Acids

11.4

Weight (kDa)

9.67

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 175
AcsI RAATTY 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
Alw21I GWGCWC 1 cut(s) 205
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 63
AseI ATTAAT 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 58, 237
AsuC2I CCSGG 1 cut(s) 24
AvaII GGWCC 2 cut(s) 58, 237
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 164
BccI CCATC 3 cut(s) 110, 116, 248
BcnI CCSGG 1 cut(s) 24
BglII AGATCT 1 cut(s) 10
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 2 cut(s) 58, 237
BmgT120I GGNCC 2 cut(s) 58, 237
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 23, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 23, 147
BseGI GGATG 2 cut(s) 121, 240
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 22
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 10
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 23, 147
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 121, 240
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 22
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 2 cut(s) 121, 240
Cfr13I GGNCC 2 cut(s) 58, 237
CviAII CATG 1 cut(s) 212
CviJI RGCY 3 cut(s) 146, 155, 285
CviKI_1 RGCY 3 cut(s) 146, 155, 285
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 58, 237
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 215
FaiI YATR 4 cut(s) 108, 213, 270, 288
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 128, 227
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 23
Hin1II CATG 1 cut(s) 215
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 76, 191, 296
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 43, 166
HpyCH4IV ACGT 2 cut(s) 249, 280
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 249, 280
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 36, 40, 55, 220
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 197
MaeII ACGT 2 cut(s) 249, 280
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 2 cut(s) 63, 83
MnlI CCTC 3 cut(s) 70, 136, 254
MseI TTAA 1 cut(s) 33
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 1 cut(s) 24
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 2 cut(s) 58, 237
PsuI RGATCY 1 cut(s) 10
PsyI GACNNNGTC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 2 cut(s) 58, 237
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 205
SetI ASST 5 cut(s) 106, 239, 252, 261, 283
SfaNI GCATC 1 cut(s) 197
SinI GGWCC 2 cut(s) 58, 237
Sse9I AATT 2 cut(s) 63, 83
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 2 cut(s) 252, 283
TaqI TCGA 1 cut(s) 159
TasI AATT 2 cut(s) 63, 83
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 260
VpaK11BI GGWCC 2 cut(s) 58, 237
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.