Rmu_sc0003862.1_g000006

calcium ion binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003862.1
Physical Location & Seq
Forward (+)
37749 .. 38060
312 bp
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UTR
Exon/CDS
Intron
Rmu_sc0003862.1_g000006.1.cds

Sequence Viewer

Length: 312 bp
atgccttctgttacgcgaaaccccgttgttacgcgaaaccccgttgtgttacttaagggtggtgttccgtacattaggcagcagatcatagatattttcaaaggttttgacaagaacggagacggcaagctgtcctgggatgaggtgcaggctgcgttcgctatactcgggtcgcattgtacctactatagagcttggcgaggacgacgctgtgccgatgccaacaacgatggcttcatctctcttgagagcgagctcgatgaacttgtcacttataccttggaacaaaattatataccgatcgcgaagtaa

Protein Analysis

103

Amino Acids

11.64

Weight (kDa)

6.55

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000732)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g34500 FvH4_2g34510 FvH4_2g34530
prunus_persica Prupe.1G436400_v2.0.a1 Prupe.1G436500_v2.0.a1 Prupe.1G436600_v2.0.a1 Prupe.1G436700_v2.0.a1 Prupe.1G436800_v2.0.a1 Prupe.1G436900_v2.0.a1 Prupe.1G437000_v2.0.a1 Prupe.1G437100_v2.0.a1 Prupe.1G437200_v2.0.a1
pyrus_communis pycom08g08330 pycom08g08350 pycom08g08360 pycom08g08370 pycom08g08380 pycom15g07870 pycom15g07900
rosa_chinensis RchiOBHm_Chr3g0490571 RchiOBHm_Chr6g0278301 RchiOBHm_Chr6g0278331 RchiOBHm_Chr6g0307631 RchiOBHm_Chr6g0307841 RchiOBHm_Chr7g0227521
rosa_laevigata RLG00000001641 RLG00000006852 RLG00000010696 RLG00000010698 RLG00000010699 RLG00000010700 RLG00000013236
rosa_multiflora Rmu_co8134650.1_g000001 Rmu_sc0000031.1_g000033 Rmu_sc0000031.1_g000046 Rmu_sc0000791.1_g000066 Rmu_sc0001016.1_g000015 Rmu_sc0001016.1_g000032 Rmu_sc0001772.1_g000026 Rmu_sc0001772.1_g000027 Rmu_sc0001772.1_g000034 Rmu_sc0001772.1_g000067 Rmu_sc0003252.1_g000012 Rmu_sc0003862.1_g000006
rosa_roxburghii Rroxscaffold_1G00006670 Rroxscaffold_3G00232100 Rroxscaffold_5G00373780 Rroxscaffold_6G00393410 Rroxscaffold_7G00160830 Rroxscaffold_7G00160860 Rroxscaffold_7G00160880 Rroxscaffold_7G00190470
rosa_rugosa Rorug03G0243900 Rorug04G0257200 Rorug06G0116100 Rorug06G0361100 Rorug06G0361200 Rorug06G0361200 Rorug06G0361300
rosa_samantha Rh2AG314100 Rh4AG313500 Rh6BG229500 Rh6BG480600 Rh6BG480800 Rh6BG480900 Rh6BG481100 Rh7AG392700 Rh7AG394500 Rh7AG394600 Rh7AG394700 Rh7CG412100
rosa_wichuraiana Rw0G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 16, 34, 305
AfaI GTAC 2 cut(s) 71, 181
AflII CTTAAG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 3 cut(s) 130, 194, 256
AluI AGCT 3 cut(s) 130, 194, 256
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 79, 152
AvaI CYCGRG 1 cut(s) 167
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 91, 139
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 187
BfrI CTTAAG 1 cut(s) 53
BisI GCNGC 2 cut(s) 80, 153
BlsI GCNGC 2 cut(s) 81, 154
Bme1390I CCNGG 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 135, 279
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 135, 279
BseGI GGATG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 91, 139
BsgI GTGCAG 1 cut(s) 167
Bsh1236I CGCG 3 cut(s) 16, 34, 305
Bsh1285I CGRYCG 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 114
BsmBI CGTCTC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 84, 300
Bsp68I TCGCGA 1 cut(s) 305
BspFNI CGCG 3 cut(s) 16, 34, 305
BspTI CTTAAG 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 135, 279
BssMI GATC 2 cut(s) 84, 300
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 136
BstAFI CTTAAG 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 128, 150, 254
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 3 cut(s) 16, 34, 305
BstKTI GATC 2 cut(s) 87, 303
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 2 cut(s) 84, 300
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 187
BstUI CGCG 3 cut(s) 16, 34, 305
BstV1I GCAGC 2 cut(s) 91, 139
BtsCI GGATG 1 cut(s) 145
BtuMI TCGCGA 1 cut(s) 305
Cac8I GCNNGC 3 cut(s) 128, 150, 254
CseI GACGC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 70, 180
CviJI RGCY 5 cut(s) 130, 152, 194, 234, 256
CviKI_1 RGCY 5 cut(s) 130, 152, 194, 234, 256
CviQI GTAC 2 cut(s) 70, 180
DpnI GATC 2 cut(s) 86, 302
DpnII GATC 2 cut(s) 84, 300
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 114
FaiI YATR 6 cut(s) 89, 164, 189, 276, 294, 296
Fnu4HI GCNGC 2 cut(s) 80, 153
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 80, 153
GluI GCNGC 2 cut(s) 80, 153
HgaI GACGC 1 cut(s) 216
Hpy188III TCNNGA 2 cut(s) 245, 304
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 84, 300
LpnPI CCDG 3 cut(s) 121, 134, 148
Lsp1109I GCAGC 2 cut(s) 91, 139
LweI GCATC 1 cut(s) 208
MaeIII GTNAC 4 cut(s) 10, 28, 48, 268
MalI GATC 2 cut(s) 86, 302
MboI GATC 2 cut(s) 84, 300
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 1 cut(s) 289
MnlI CCTC 2 cut(s) 136, 194
MseI TTAA 1 cut(s) 54
MspCI CTTAAG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 3 cut(s) 16, 34, 305
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 84, 300
NmuCI GTSAC 1 cut(s) 268
NruI TCGCGA 1 cut(s) 305
PkrI GCNGC 2 cut(s) 81, 154
Ple19I CGATCG 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PvuI CGATCG 1 cut(s) 303
RruI TCGCGA 1 cut(s) 305
RsaI GTAC 2 cut(s) 71, 181
RsaNI GTAC 2 cut(s) 70, 180
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 80, 153
Sau3AI GATC 2 cut(s) 84, 300
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 258
SetI ASST 7 cut(s) 106, 132, 147, 185, 196, 258, 281
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 187
SmlI CTYRAG 2 cut(s) 53, 245
SmoI CTYRAG 2 cut(s) 53, 245
Sse9I AATT 1 cut(s) 289
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 279
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 289
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 79, 152
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 226, 276
TspGWI ACGGA 2 cut(s) 57, 132
Vha464I CTTAAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.